Wall clock time and date at job start Tue Mar 31 2020 14:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47352 * 2 1 4 4 O 1.45204 * 109.47444 * 120.00117 * 2 1 3 5 5 C 1.34229 * 116.99857 * 270.00329 * 4 2 1 6 6 O 1.20830 * 120.00006 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99860 * 179.97438 * 5 4 2 8 8 H 1.08998 * 109.47351 * 60.00141 * 7 5 4 9 9 C 1.52996 * 109.47284 * 299.99491 * 7 5 4 10 10 C 1.50710 * 109.47244 * 179.97438 * 7 5 4 11 11 C 1.39868 * 126.03523 * 59.68794 * 10 7 5 12 12 N 1.30838 * 108.19908 * 179.81764 * 11 10 7 13 13 N 1.40079 * 108.20672 * 0.44218 * 12 11 10 14 14 C 1.46502 * 126.04096 * 179.73781 * 13 12 11 15 15 C 1.34947 * 107.92707 * 359.71693 * 13 12 11 16 16 C 1.50698 * 109.47587 * 240.00073 * 2 1 3 17 17 O 1.21280 * 120.00203 * 256.03360 * 16 2 1 18 18 N 1.34779 * 120.00030 * 76.02141 * 16 2 1 19 19 C 1.46499 * 119.99988 * 5.37097 * 18 16 2 20 20 C 1.46498 * 120.00081 * 185.37169 * 18 16 2 21 21 C 1.50702 * 109.47304 * 90.00354 * 20 18 16 22 22 H 1.08001 * 119.99689 * 359.97438 * 21 20 18 23 23 C 1.37874 * 119.99989 * 180.02562 * 21 20 18 24 24 N 1.31519 * 120.00227 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99902 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47109 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46754 * 120.00104 * 25 23 21 28 28 H 1.48498 * 109.47283 * 239.99489 * 25 23 21 29 29 H 1.09000 * 109.46932 * 66.13647 * 1 2 3 30 30 H 1.08999 * 109.47044 * 306.13700 * 1 2 3 31 31 H 1.08993 * 109.47250 * 186.13628 * 1 2 3 32 32 H 1.09001 * 109.47518 * 180.02562 * 9 7 5 33 33 H 1.08998 * 109.47457 * 300.00585 * 9 7 5 34 34 H 1.09000 * 109.46939 * 60.00252 * 9 7 5 35 35 H 1.07999 * 125.90301 * 0.02562 * 11 10 7 36 36 H 1.08999 * 109.47002 * 269.97396 * 14 13 12 37 37 H 1.08995 * 109.47324 * 29.97288 * 14 13 12 38 38 H 1.08999 * 109.47402 * 149.97577 * 14 13 12 39 39 H 1.07999 * 126.13373 * 180.02562 * 15 13 12 40 40 H 1.09006 * 109.47084 * 84.81792 * 19 18 16 41 41 H 1.08994 * 109.47590 * 204.81862 * 19 18 16 42 42 H 1.09006 * 109.47202 * 324.82157 * 19 18 16 43 43 H 1.09001 * 109.47134 * 210.00388 * 20 18 16 44 44 H 1.09001 * 109.47100 * 330.00088 * 20 18 16 45 45 H 0.96998 * 120.00236 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9981 1.2519 2.2504 7 6 2.7183 -0.5772 3.5494 8 1 3.6872 -1.0408 3.3639 9 6 1.7224 -1.6436 4.0098 10 6 2.8614 0.4730 4.6208 11 6 1.8366 1.2826 5.1215 12 7 2.3449 2.0642 6.0395 13 7 3.7131 1.7832 6.1449 14 6 4.6600 2.4371 7.0517 15 6 4.0051 0.8034 5.2641 16 6 2.0324 -0.7104 -1.2304 17 8 2.4736 -1.8367 -1.1428 18 7 1.9913 -0.0941 -2.4284 19 6 1.5690 1.3058 -2.5178 20 6 2.3688 -0.8242 -3.6410 21 6 1.1505 -1.4918 -4.2253 22 1 0.1911 -1.3834 -3.7414 23 6 1.2610 -2.2417 -5.3770 24 7 2.4295 -2.3742 -5.9659 25 14 -0.2489 -3.0698 -6.1008 26 1 -1.4320 -2.7676 -5.2557 27 1 -0.4808 -2.5609 -7.4765 28 1 -0.0342 -4.5384 -6.1460 29 1 -0.3633 0.4158 -0.9398 30 1 -0.3633 0.6060 0.8299 31 1 -0.3633 -1.0217 0.1098 32 1 2.0846 -2.1071 4.9275 33 1 0.7535 -1.1800 4.1953 34 1 1.6193 -2.4031 3.2349 35 1 0.8035 1.2635 4.8072 36 1 5.0956 3.3055 6.5575 37 1 4.1379 2.7562 7.9537 38 1 5.4509 1.7361 7.3184 39 1 4.9772 0.3618 5.1019 40 1 2.4229 1.9558 -2.3267 41 1 1.1775 1.5043 -3.5155 42 1 0.7924 1.4992 -1.7776 43 1 2.7861 -0.1284 -4.3690 44 1 3.1136 -1.5804 -3.3928 45 1 2.5072 -2.9015 -6.7763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750557742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:45 Heat of formation + Delta-G solvation = -59.741829 kcal Electronic energy + Delta-G solvation = -27425.291465 eV Core-core repulsion = 23444.473271 eV Total energy + Delta-G solvation = -3980.818194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.39950 -41.67963 -40.46860 -37.64830 -36.66522 -35.57944 -34.83337 -33.62036 -32.83704 -30.41052 -29.69355 -27.57822 -27.37529 -26.30411 -25.62132 -24.19173 -22.47164 -22.01738 -20.75871 -20.35661 -18.83124 -18.68624 -18.23890 -17.57832 -17.32225 -17.13701 -16.66252 -16.28183 -16.23866 -15.88399 -15.32620 -15.22119 -14.73647 -14.57734 -14.35843 -14.13089 -13.85563 -13.67419 -13.60218 -13.53748 -13.40028 -13.33290 -13.12005 -13.08016 -12.83198 -12.68492 -12.60242 -12.51327 -12.48006 -12.20560 -11.86511 -11.68197 -11.53035 -11.32679 -10.64579 -10.60344 -10.35416 -9.51454 -9.40162 -8.22487 -6.37196 0.90628 1.17681 1.29056 1.38461 1.40686 1.52119 1.61877 1.70661 1.88376 2.36698 2.49881 3.07706 3.42460 3.55322 3.59316 3.81209 3.87667 3.99191 4.14498 4.20497 4.28811 4.32698 4.38845 4.46347 4.59013 4.59937 4.64642 4.72070 4.81108 4.84276 4.86324 4.95344 5.00620 5.09391 5.12544 5.21068 5.33007 5.40463 5.53005 5.64482 5.79198 6.03878 6.13655 6.56224 6.71445 6.72050 6.74748 7.20904 7.36788 8.85276 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029284 B = 0.002404 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.930238 B =11645.641486 C =11768.008510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.081 3.919 3 H 0.116 0.884 4 O -0.341 6.341 5 C 0.462 3.538 6 O -0.522 6.522 7 C 0.009 3.991 8 H 0.132 0.868 9 C -0.135 4.135 10 C -0.247 4.247 11 C 0.067 3.933 12 N -0.337 5.337 13 N -0.380 5.380 14 C 0.093 3.907 15 C 0.077 3.923 16 C 0.502 3.498 17 O -0.576 6.576 18 N -0.602 5.602 19 C 0.068 3.932 20 C 0.258 3.742 21 C -0.542 4.542 22 H 0.058 0.942 23 C 0.007 3.993 24 N -0.928 5.928 25 Si 0.969 3.031 26 H -0.265 1.265 27 H -0.270 1.270 28 H -0.282 1.282 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.179 0.821 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.213 0.787 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.029 0.971 44 H 0.001 0.999 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.818 9.052 25.147 26.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.133 0.867 4 O -0.257 6.257 5 C 0.305 3.695 6 O -0.410 6.410 7 C -0.012 4.012 8 H 0.150 0.850 9 C -0.193 4.193 10 C -0.259 4.259 11 C -0.118 4.118 12 N -0.159 5.159 13 N -0.161 5.161 14 C -0.047 4.047 15 C -0.070 4.070 16 C 0.289 3.711 17 O -0.455 6.455 18 N -0.334 5.334 19 C -0.074 4.074 20 C 0.137 3.863 21 C -0.581 4.581 22 H 0.076 0.924 23 C -0.192 4.192 24 N -0.568 5.568 25 Si 0.793 3.207 26 H -0.189 1.189 27 H -0.196 1.196 28 H -0.208 1.208 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.196 0.804 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.138 0.862 39 H 0.230 0.770 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.047 0.953 44 H 0.019 0.981 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.942 9.802 25.963 27.820 hybrid contribution -0.342 -0.945 -1.600 1.889 sum 1.600 8.857 24.364 25.973 Atomic orbital electron populations 1.22145 0.90125 1.04152 1.05076 1.22468 0.97280 0.96831 0.81171 0.86656 1.86655 1.76835 1.42305 1.19889 1.24575 0.73578 0.85813 0.85487 1.90624 1.48634 1.17400 1.84351 1.19216 1.03020 0.94356 0.84563 0.84988 1.21755 0.97863 0.96767 1.02887 1.19536 0.94000 1.06343 1.05973 1.23757 1.00608 0.93595 0.93854 1.77304 0.90431 1.24994 1.23189 1.48788 1.06791 1.29214 1.31334 1.22207 0.90705 0.99223 0.92540 1.22862 1.00681 0.91609 0.91886 1.20645 0.78987 0.86403 0.85058 1.90649 1.47560 1.20979 1.86359 1.48070 1.65031 1.13747 1.06554 1.22129 1.00916 0.79727 1.04640 1.18870 0.95253 0.91281 0.80847 1.21722 0.95146 1.31772 1.09423 0.92371 1.25877 0.99446 0.96699 0.97201 1.70060 1.25337 1.41194 1.20196 0.85341 0.79000 0.77932 0.78378 1.18858 1.19554 1.20810 0.88893 0.88902 0.91538 0.89081 0.92140 0.91471 0.80443 0.90025 0.89140 0.86246 0.77039 0.91101 0.90122 0.89196 0.95293 0.98090 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 9.19 71.98 0.66 -3.63 16 2 C 0.08 2.66 2.14 29.85 0.06 2.72 16 3 H 0.12 3.44 6.31 -2.39 -0.02 3.42 16 4 O -0.34 -11.06 9.37 -45.20 -0.42 -11.49 16 5 C 0.46 12.50 7.18 71.23 0.51 13.01 16 6 O -0.52 -15.89 14.58 21.95 0.32 -15.57 16 7 C 0.01 0.17 3.19 -12.29 -0.04 0.13 16 8 H 0.13 2.03 8.11 -2.39 -0.02 2.01 16 9 C -0.14 -2.22 9.02 71.98 0.65 -1.57 16 10 C -0.25 -4.82 4.37 -20.14 -0.09 -4.91 16 11 C 0.07 1.53 10.77 85.24 0.92 2.45 16 12 N -0.34 -8.02 12.58 -57.02 -0.72 -8.73 16 13 N -0.38 -6.47 4.01 -369.57 -1.48 -7.95 16 14 C 0.09 0.70 11.47 127.77 1.47 2.17 16 15 C 0.08 1.17 11.38 83.54 0.95 2.12 16 16 C 0.50 21.94 6.95 87.66 0.61 22.55 16 17 O -0.58 -30.95 16.13 15.23 0.25 -30.70 16 18 N -0.60 -26.01 2.86 -851.13 -2.43 -28.44 16 19 C 0.07 2.07 9.79 127.77 1.25 3.32 16 20 C 0.26 13.96 5.18 85.63 0.44 14.41 16 21 C -0.54 -30.88 9.39 25.60 0.24 -30.64 16 22 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 23 C 0.01 0.39 5.46 84.65 0.46 0.85 16 24 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 25 Si 0.97 44.45 29.54 68.60 2.03 46.47 16 26 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 29 H 0.09 2.37 6.33 -2.39 -0.02 2.35 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 0.98 8.03 -2.39 -0.02 0.96 16 34 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 35 H 0.18 3.74 8.06 -2.91 -0.02 3.71 16 36 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.21 1.39 8.06 -2.91 -0.02 1.36 16 40 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.08 2.48 8.03 -2.39 -0.02 2.46 16 42 H 0.09 2.20 4.92 -2.38 -0.01 2.19 16 43 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 44 H 0.00 0.06 7.36 -2.39 -0.02 0.04 16 45 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -83.13 383.64 6.91 -76.22 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.99 Total: 12.77 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 8.10 Total: 22.98 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -4.35 Total: -100.69 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: 0.14 Total: -57.76 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -83.13 6.91 -76.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750557742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.483 kcal (2) G-P(sol) polarization free energy of solvation -83.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds