Wall clock time and date at job start Tue Mar 31 2020 14:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47168 * 2 1 4 4 O 1.45200 * 109.46950 * 240.00352 * 2 1 3 5 5 C 1.34231 * 117.00102 * 90.00044 * 4 2 1 6 6 O 1.20819 * 119.99810 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99710 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47612 * 300.00315 * 7 5 4 9 9 C 1.53006 * 109.47184 * 60.00260 * 7 5 4 10 10 C 1.50699 * 109.46911 * 179.97438 * 7 5 4 11 11 C 1.39868 * 126.04128 * 299.69097 * 10 7 5 12 12 N 1.30838 * 108.20386 * 179.81758 * 11 10 7 13 13 N 1.40083 * 108.20459 * 0.44264 * 12 11 10 14 14 C 1.46496 * 126.03899 * 179.74129 * 13 12 11 15 15 C 1.34952 * 107.92328 * 359.71419 * 13 12 11 16 16 C 1.50700 * 109.47370 * 120.00159 * 2 1 3 17 17 O 1.21285 * 119.99948 * 119.99775 * 16 2 1 18 18 N 1.34778 * 120.00131 * 300.00174 * 16 2 1 19 19 C 1.46501 * 119.99774 * 359.97438 * 18 16 2 20 20 C 1.46490 * 120.00071 * 179.97438 * 18 16 2 21 21 C 1.50701 * 109.47105 * 90.00083 * 20 18 16 22 22 H 1.08003 * 120.00090 * 0.02562 * 21 20 18 23 23 C 1.37879 * 120.00352 * 179.97438 * 21 20 18 24 24 N 1.31512 * 119.99633 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00076 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46998 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47019 * 120.00433 * 25 23 21 28 28 H 1.48499 * 109.46899 * 240.00058 * 25 23 21 29 29 H 1.09000 * 109.46709 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46907 * 299.99635 * 1 2 3 31 31 H 1.08997 * 109.46819 * 60.00112 * 1 2 3 32 32 H 1.09001 * 109.47002 * 299.99404 * 9 7 5 33 33 H 1.08993 * 109.46955 * 59.99842 * 9 7 5 34 34 H 1.09000 * 109.47050 * 179.97438 * 9 7 5 35 35 H 1.08004 * 125.90048 * 0.02562 * 11 10 7 36 36 H 1.08997 * 109.47403 * 269.97761 * 14 13 12 37 37 H 1.09004 * 109.47013 * 29.97379 * 14 13 12 38 38 H 1.09004 * 109.47375 * 149.97246 * 14 13 12 39 39 H 1.08002 * 126.12093 * 180.02562 * 15 13 12 40 40 H 1.09002 * 109.47348 * 89.99846 * 19 18 16 41 41 H 1.08998 * 109.47324 * 209.99719 * 19 18 16 42 42 H 1.09005 * 109.47157 * 330.00432 * 19 18 16 43 43 H 1.09006 * 109.47207 * 209.99603 * 20 18 16 44 44 H 1.08995 * 109.47460 * 330.00283 * 20 18 16 45 45 H 0.97003 * 119.99697 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9982 1.2519 -2.2503 7 6 2.7193 -0.5769 -3.5492 8 1 3.6884 -1.0400 -3.3632 9 6 1.7242 -1.6440 -4.0099 10 6 2.8610 0.4731 -4.6208 11 6 1.8329 1.2728 -5.1305 12 7 2.3425 2.0631 -6.0402 13 7 3.7112 1.7839 -6.1454 14 6 4.6574 2.4393 -7.0517 15 6 4.0043 0.8048 -5.2641 16 6 2.0324 -0.7104 1.2304 17 8 2.7297 -1.6965 1.1191 18 7 1.7069 -0.2500 2.4546 19 6 0.8650 0.9414 2.5890 20 6 2.1948 -0.9410 3.6506 21 6 3.5224 -0.3580 4.0610 22 1 3.9589 0.4470 3.4884 23 6 4.1795 -0.8515 5.1682 24 7 3.6478 -1.8314 5.8657 25 14 5.8256 -0.1293 5.6764 26 1 6.2033 0.9536 4.7333 27 1 5.7198 0.4254 7.0498 28 1 6.8618 -1.1927 5.6506 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6213 -2.4036 -3.2350 33 1 0.7552 -1.1810 -4.1959 34 1 2.0872 -2.1073 -4.9273 35 1 0.7977 1.2452 -4.8236 36 1 4.6929 1.8953 -7.9955 37 1 4.3343 3.4641 -7.2351 38 1 5.6488 2.4465 -6.5988 39 1 4.9772 0.3651 -5.1012 40 1 -0.1831 0.6439 2.6222 41 1 1.1228 1.4665 3.5087 42 1 1.0288 1.6002 1.7362 43 1 1.4767 -0.8154 4.4611 44 1 2.3156 -2.0022 3.4334 45 1 4.1102 -2.1789 6.6444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750557746.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:52 Heat of formation + Delta-G solvation = -32.238229 kcal Electronic energy + Delta-G solvation = -27467.552637 eV Core-core repulsion = 23487.927089 eV Total energy + Delta-G solvation = -3979.625548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57847 -40.48768 -38.91969 -36.37902 -34.93265 -34.74936 -33.00528 -32.76246 -31.42516 -29.69598 -27.66746 -26.79113 -26.23628 -25.12245 -24.12594 -22.65814 -21.43753 -21.21939 -19.84601 -18.83349 -17.70875 -17.14214 -16.52519 -16.39115 -16.08474 -15.77893 -15.48522 -15.16021 -14.68348 -14.58453 -14.44339 -14.00999 -13.56465 -13.36572 -13.22374 -13.10827 -12.91085 -12.87323 -12.42884 -12.35459 -12.13290 -12.05399 -11.88663 -11.81829 -11.55616 -11.33746 -11.13993 -10.89410 -10.73814 -10.64370 -10.54591 -10.26329 -10.17324 -9.63291 -9.60716 -8.88485 -8.65475 -8.45570 -7.71525 -6.06330 -4.11055 1.63619 2.24618 2.30249 2.39656 2.86980 3.28751 3.29355 3.37007 3.42006 3.93626 4.21301 4.43326 4.54151 4.60051 4.76132 4.80073 4.86452 4.95459 5.02122 5.03747 5.06048 5.15405 5.18005 5.28452 5.46357 5.50797 5.56519 5.68814 5.70711 5.71585 5.84668 5.87974 6.01658 6.04248 6.23996 6.40249 6.56030 6.74107 6.99512 7.39522 7.47533 7.47865 7.85810 7.90747 8.20143 8.30790 8.85594 9.00695 9.54054 11.01838 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017245 B = 0.002705 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.262657 B =10350.531158 C =11103.560196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.070 3.930 3 H 0.104 0.896 4 O -0.324 6.324 5 C 0.463 3.537 6 O -0.503 6.503 7 C 0.001 3.999 8 H 0.114 0.886 9 C -0.139 4.139 10 C -0.227 4.227 11 C 0.081 3.919 12 N -0.300 5.300 13 N -0.379 5.379 14 C 0.103 3.897 15 C 0.068 3.932 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.596 5.596 19 C 0.076 3.924 20 C 0.246 3.754 21 C -0.527 4.527 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.179 0.821 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.176 0.824 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 5.512 -23.221 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 H 0.122 0.878 4 O -0.239 6.239 5 C 0.305 3.695 6 O -0.390 6.390 7 C -0.019 4.019 8 H 0.132 0.868 9 C -0.197 4.197 10 C -0.238 4.238 11 C -0.106 4.106 12 N -0.121 5.121 13 N -0.160 5.160 14 C -0.038 4.038 15 C -0.078 4.078 16 C 0.293 3.707 17 O -0.396 6.396 18 N -0.330 5.330 19 C -0.068 4.068 20 C 0.128 3.872 21 C -0.566 4.566 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.196 0.804 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.193 0.807 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.652 6.241 -24.016 25.081 hybrid contribution 1.157 0.042 1.100 1.597 sum -2.495 6.283 -22.916 23.892 Atomic orbital electron populations 1.22388 0.92546 1.04010 1.04210 1.22575 0.95613 0.97618 0.83049 0.87816 1.86608 1.76511 1.41419 1.19402 1.23763 0.74385 0.85971 0.85379 1.90639 1.47705 1.16550 1.84155 1.19117 1.02071 0.94195 0.86556 0.86781 1.21765 0.98061 0.97445 1.02388 1.19441 0.93431 1.05901 1.05059 1.23619 1.00044 0.93237 0.93652 1.77372 0.88546 1.23698 1.22505 1.48407 1.07283 1.29263 1.31065 1.21845 0.90598 0.98927 0.92477 1.22283 0.99848 0.92659 0.93052 1.19801 0.81655 0.85375 0.83845 1.90699 1.36955 1.26028 1.85903 1.48056 1.49893 1.28341 1.06710 1.21880 0.93950 0.88055 1.02892 1.19348 0.94358 0.93758 0.79766 1.21467 1.04823 1.19115 1.11226 0.92395 1.24935 0.97988 0.94945 0.96229 1.69940 1.38959 1.26043 1.18356 0.86431 0.83691 0.79061 0.78190 1.19808 1.20934 1.20823 0.91030 0.89021 0.91390 0.90581 0.92104 0.91072 0.80380 0.90774 0.89296 0.89462 0.80703 0.93024 0.90376 0.92284 0.94617 0.93628 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 9.18 37.16 0.34 -1.93 16 2 C 0.07 1.18 2.18 -27.88 -0.06 1.12 16 3 H 0.10 1.72 6.41 -51.93 -0.33 1.39 16 4 O -0.32 -5.39 9.32 -45.90 -0.43 -5.82 16 5 C 0.46 6.71 7.18 36.00 0.26 6.96 16 6 O -0.50 -8.24 14.61 -18.74 -0.27 -8.51 16 7 C 0.00 0.01 3.19 -92.92 -0.30 -0.29 16 8 H 0.11 1.07 8.11 -51.93 -0.42 0.65 16 9 C -0.14 -1.22 9.01 37.16 0.33 -0.89 16 10 C -0.23 -2.49 4.36 -105.06 -0.46 -2.95 16 11 C 0.08 0.96 10.78 -17.37 -0.19 0.78 16 12 N -0.30 -3.77 12.58 30.63 0.39 -3.38 16 13 N -0.38 -3.76 4.01 -68.16 -0.27 -4.04 16 14 C 0.10 0.56 11.47 59.84 0.69 1.24 16 15 C 0.07 0.64 11.38 -17.22 -0.20 0.44 16 16 C 0.51 10.96 7.15 -10.98 -0.08 10.88 16 17 O -0.52 -13.52 16.08 -14.11 -0.23 -13.74 16 18 N -0.60 -12.69 2.86 -182.96 -0.52 -13.22 16 19 C 0.08 1.19 8.80 59.85 0.53 1.72 16 20 C 0.25 6.42 5.16 -5.20 -0.03 6.39 16 21 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 22 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 25 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.07 4.53 -51.93 -0.24 0.83 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.06 0.51 8.02 -51.93 -0.42 0.09 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.18 1.86 8.06 -52.48 -0.42 1.44 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 41 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 42 H 0.06 0.79 6.01 -51.93 -0.31 0.48 16 43 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 44 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -37.51 381.09 -6.11 -43.62 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.65 Total: -1.61 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 0.42 Total: 9.82 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.33 Total: -46.37 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.93 Total: -28.08 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.51 -6.11 -43.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750557746.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.377 kcal (2) G-P(sol) polarization free energy of solvation -37.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds