Wall clock time and date at job start Tue Mar 31 2020 14:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47168 * 2 1 4 4 O 1.45200 * 109.46950 * 240.00352 * 2 1 3 5 5 C 1.34231 * 117.00102 * 90.00044 * 4 2 1 6 6 O 1.20819 * 119.99810 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99710 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47612 * 300.00315 * 7 5 4 9 9 C 1.53006 * 109.47184 * 60.00260 * 7 5 4 10 10 C 1.50699 * 109.46911 * 179.97438 * 7 5 4 11 11 C 1.39868 * 126.04128 * 299.69097 * 10 7 5 12 12 N 1.30838 * 108.20386 * 179.81758 * 11 10 7 13 13 N 1.40083 * 108.20459 * 0.44264 * 12 11 10 14 14 C 1.46496 * 126.03899 * 179.74129 * 13 12 11 15 15 C 1.34952 * 107.92328 * 359.71419 * 13 12 11 16 16 C 1.50700 * 109.47370 * 120.00159 * 2 1 3 17 17 O 1.21285 * 119.99948 * 119.99775 * 16 2 1 18 18 N 1.34778 * 120.00131 * 300.00174 * 16 2 1 19 19 C 1.46501 * 119.99774 * 359.97438 * 18 16 2 20 20 C 1.46490 * 120.00071 * 179.97438 * 18 16 2 21 21 C 1.50701 * 109.47105 * 90.00083 * 20 18 16 22 22 H 1.08003 * 120.00090 * 0.02562 * 21 20 18 23 23 C 1.37879 * 120.00352 * 179.97438 * 21 20 18 24 24 N 1.31512 * 119.99633 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00076 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46998 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47019 * 120.00433 * 25 23 21 28 28 H 1.48499 * 109.46899 * 240.00058 * 25 23 21 29 29 H 1.09000 * 109.46709 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46907 * 299.99635 * 1 2 3 31 31 H 1.08997 * 109.46819 * 60.00112 * 1 2 3 32 32 H 1.09001 * 109.47002 * 299.99404 * 9 7 5 33 33 H 1.08993 * 109.46955 * 59.99842 * 9 7 5 34 34 H 1.09000 * 109.47050 * 179.97438 * 9 7 5 35 35 H 1.08004 * 125.90048 * 0.02562 * 11 10 7 36 36 H 1.08997 * 109.47403 * 269.97761 * 14 13 12 37 37 H 1.09004 * 109.47013 * 29.97379 * 14 13 12 38 38 H 1.09004 * 109.47375 * 149.97246 * 14 13 12 39 39 H 1.08002 * 126.12093 * 180.02562 * 15 13 12 40 40 H 1.09002 * 109.47348 * 89.99846 * 19 18 16 41 41 H 1.08998 * 109.47324 * 209.99719 * 19 18 16 42 42 H 1.09005 * 109.47157 * 330.00432 * 19 18 16 43 43 H 1.09006 * 109.47207 * 209.99603 * 20 18 16 44 44 H 1.08995 * 109.47460 * 330.00283 * 20 18 16 45 45 H 0.97003 * 119.99697 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9982 1.2519 -2.2503 7 6 2.7193 -0.5769 -3.5492 8 1 3.6884 -1.0400 -3.3632 9 6 1.7242 -1.6440 -4.0099 10 6 2.8610 0.4731 -4.6208 11 6 1.8329 1.2728 -5.1305 12 7 2.3425 2.0631 -6.0402 13 7 3.7112 1.7839 -6.1454 14 6 4.6574 2.4393 -7.0517 15 6 4.0043 0.8048 -5.2641 16 6 2.0324 -0.7104 1.2304 17 8 2.7297 -1.6965 1.1191 18 7 1.7069 -0.2500 2.4546 19 6 0.8650 0.9414 2.5890 20 6 2.1948 -0.9410 3.6506 21 6 3.5224 -0.3580 4.0610 22 1 3.9589 0.4470 3.4884 23 6 4.1795 -0.8515 5.1682 24 7 3.6478 -1.8314 5.8657 25 14 5.8256 -0.1293 5.6764 26 1 6.2033 0.9536 4.7333 27 1 5.7198 0.4254 7.0498 28 1 6.8618 -1.1927 5.6506 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6213 -2.4036 -3.2350 33 1 0.7552 -1.1810 -4.1959 34 1 2.0872 -2.1073 -4.9273 35 1 0.7977 1.2452 -4.8236 36 1 4.6929 1.8953 -7.9955 37 1 4.3343 3.4641 -7.2351 38 1 5.6488 2.4465 -6.5988 39 1 4.9772 0.3651 -5.1012 40 1 -0.1831 0.6439 2.6222 41 1 1.1228 1.4665 3.5087 42 1 1.0288 1.6002 1.7362 43 1 1.4767 -0.8154 4.4611 44 1 2.3156 -2.0022 3.4334 45 1 4.1102 -2.1789 6.6444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750557746.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:51 Heat of formation + Delta-G solvation = -56.430487 kcal Electronic energy + Delta-G solvation = -27468.601692 eV Core-core repulsion = 23487.927089 eV Total energy + Delta-G solvation = -3980.674603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.40783 -41.69064 -40.48376 -37.63938 -36.71027 -35.59176 -34.90511 -33.62143 -32.82648 -30.42524 -29.55175 -27.73595 -27.38309 -26.21667 -25.61893 -24.18238 -22.48290 -22.03160 -20.77442 -20.41390 -18.89121 -18.64054 -18.23204 -17.55541 -17.40595 -17.05303 -16.69280 -16.42367 -16.22202 -15.73117 -15.28399 -15.26816 -14.76341 -14.62830 -14.35200 -14.21816 -13.89583 -13.70050 -13.60378 -13.53155 -13.40657 -13.34552 -13.09911 -12.99968 -12.82002 -12.64557 -12.59174 -12.49513 -12.40440 -12.21083 -11.84807 -11.69363 -11.53784 -11.33456 -10.65560 -10.59603 -10.36494 -9.51050 -9.41126 -8.23991 -6.38446 0.89295 1.17140 1.30068 1.36316 1.38475 1.50174 1.63979 1.69660 1.87605 2.35090 2.49705 3.05951 3.42475 3.54229 3.58680 3.81435 3.88546 3.98039 4.14162 4.19056 4.30654 4.33530 4.38331 4.45839 4.56498 4.65346 4.69038 4.70547 4.80369 4.83180 4.88668 4.96282 5.00376 5.11945 5.12121 5.20370 5.32499 5.40701 5.51770 5.63875 5.78461 6.03476 6.11937 6.56767 6.70257 6.70526 6.74710 7.21244 7.36331 8.83503 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017245 B = 0.002705 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.262657 B =10350.531158 C =11103.560196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 H 0.109 0.891 4 O -0.340 6.340 5 C 0.462 3.538 6 O -0.524 6.524 7 C 0.008 3.992 8 H 0.129 0.871 9 C -0.134 4.134 10 C -0.246 4.246 11 C 0.068 3.932 12 N -0.336 5.336 13 N -0.380 5.380 14 C 0.093 3.907 15 C 0.075 3.925 16 C 0.500 3.500 17 O -0.578 6.578 18 N -0.600 5.600 19 C 0.068 3.932 20 C 0.260 3.740 21 C -0.545 4.545 22 H 0.051 0.949 23 C 0.009 3.991 24 N -0.926 5.926 25 Si 0.967 3.033 26 H -0.270 1.270 27 H -0.268 1.268 28 H -0.280 1.280 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.181 0.819 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.211 0.789 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.033 0.967 44 H 0.002 0.998 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 6.801 -24.427 25.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.021 3.979 3 H 0.126 0.874 4 O -0.256 6.256 5 C 0.306 3.694 6 O -0.412 6.412 7 C -0.013 4.013 8 H 0.147 0.853 9 C -0.191 4.191 10 C -0.258 4.258 11 C -0.117 4.117 12 N -0.158 5.158 13 N -0.162 5.162 14 C -0.047 4.047 15 C -0.072 4.072 16 C 0.287 3.713 17 O -0.457 6.457 18 N -0.333 5.333 19 C -0.073 4.073 20 C 0.139 3.861 21 C -0.584 4.584 22 H 0.069 0.931 23 C -0.190 4.190 24 N -0.565 5.565 25 Si 0.792 3.208 26 H -0.194 1.194 27 H -0.193 1.193 28 H -0.206 1.206 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.198 0.802 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.228 0.772 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.051 0.949 44 H 0.020 0.980 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.055 7.581 -25.243 26.533 hybrid contribution 0.973 -0.342 1.421 1.756 sum -2.081 7.239 -23.821 24.984 Atomic orbital electron populations 1.22389 0.89384 1.04533 1.05963 1.22451 0.97770 0.96471 0.81219 0.87350 1.86627 1.76938 1.42239 1.19815 1.24559 0.73541 0.85800 0.85516 1.90621 1.48728 1.17462 1.84396 1.19223 1.03008 0.94440 0.84587 0.85294 1.21751 0.97826 0.96662 1.02878 1.19535 0.93932 1.06594 1.05752 1.23772 1.00597 0.93542 0.93837 1.77298 0.90329 1.24755 1.23439 1.48785 1.06874 1.29194 1.31320 1.22202 0.90794 0.98806 0.92863 1.22854 1.00768 0.91769 0.91853 1.20675 0.80629 0.84835 0.85148 1.90657 1.39526 1.28667 1.86874 1.48041 1.50200 1.29516 1.05500 1.22227 0.94775 0.86331 1.03992 1.18846 0.93933 0.91835 0.81481 1.21709 1.05978 1.19178 1.11519 0.93111 1.25832 1.01756 0.95227 0.96174 1.70045 1.40594 1.27062 1.18823 0.85372 0.78800 0.78277 0.78388 1.19392 1.19281 1.20600 0.91168 0.87267 0.89531 0.91328 0.91925 0.89145 0.80218 0.89083 0.89466 0.86880 0.77245 0.89581 0.90746 0.89539 0.94888 0.97986 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 9.18 71.98 0.66 -3.33 16 2 C 0.08 2.60 2.18 29.85 0.07 2.67 16 3 H 0.11 3.46 6.41 -2.39 -0.02 3.44 16 4 O -0.34 -11.22 9.32 -45.07 -0.42 -11.64 16 5 C 0.46 13.00 7.18 71.24 0.51 13.51 16 6 O -0.52 -16.66 14.61 21.99 0.32 -16.34 16 7 C 0.01 0.15 3.19 -12.28 -0.04 0.11 16 8 H 0.13 2.20 8.11 -2.39 -0.02 2.18 16 9 C -0.13 -2.18 9.01 71.98 0.65 -1.53 16 10 C -0.25 -5.05 4.36 -20.15 -0.09 -5.14 16 11 C 0.07 1.58 10.78 85.24 0.92 2.50 16 12 N -0.34 -8.21 12.58 -57.02 -0.72 -8.93 16 13 N -0.38 -6.87 4.01 -369.57 -1.48 -8.35 16 14 C 0.09 0.79 11.47 127.77 1.47 2.26 16 15 C 0.08 1.24 11.38 83.54 0.95 2.19 16 16 C 0.50 21.87 7.15 87.66 0.63 22.50 16 17 O -0.58 -31.25 16.08 15.75 0.25 -30.99 16 18 N -0.60 -25.73 2.86 -851.14 -2.43 -28.16 16 19 C 0.07 2.02 8.80 127.77 1.12 3.15 16 20 C 0.26 14.00 5.16 85.64 0.44 14.44 16 21 C -0.55 -31.60 9.39 25.60 0.24 -31.36 16 22 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 23 C 0.01 0.54 5.46 84.66 0.46 1.00 16 24 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 25 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.11 2.20 4.53 -2.39 -0.01 2.19 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.22 8.11 -2.39 -0.02 1.20 16 33 H 0.06 0.98 8.02 -2.39 -0.02 0.96 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 39 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.09 1.98 6.95 -2.39 -0.02 1.96 16 41 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 42 H 0.09 2.10 6.01 -2.38 -0.01 2.08 16 43 H 0.03 1.77 8.07 -2.38 -0.02 1.75 16 44 H 0.00 0.12 7.42 -2.39 -0.02 0.11 16 45 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -84.39 381.09 6.82 -77.57 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.99 Total: 12.23 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: 7.99 Total: 22.97 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -4.35 Total: -100.83 kcal Atomic # 8 Polarization: -59.13 SS G_CDS: 0.15 Total: -58.97 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -84.39 6.82 -77.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750557746.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.140 kcal (2) G-P(sol) polarization free energy of solvation -84.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds