Wall clock time and date at job start Tue Mar 31 2020 14:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08993 * 109.47533 * 2 1 4 4 O 1.45204 * 109.47350 * 120.00446 * 2 1 3 5 5 C 1.34224 * 116.99779 * 269.99680 * 4 2 1 6 6 O 1.20830 * 120.00214 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99946 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47028 * 299.99822 * 7 5 4 9 9 C 1.52999 * 109.46964 * 60.00047 * 7 5 4 10 10 C 1.50703 * 109.47148 * 180.02562 * 7 5 4 11 11 C 1.39869 * 126.03884 * 299.68867 * 10 7 5 12 12 N 1.30828 * 108.20444 * 180.26445 * 11 10 7 13 13 N 1.40091 * 108.20737 * 0.02562 * 12 11 10 14 14 C 1.46492 * 126.03989 * 180.02562 * 13 12 11 15 15 C 1.34948 * 107.92165 * 359.97438 * 13 12 11 16 16 C 1.50705 * 109.46912 * 240.00166 * 2 1 3 17 17 O 1.21285 * 119.99946 * 256.02914 * 16 2 1 18 18 N 1.34769 * 120.00059 * 76.02753 * 16 2 1 19 19 C 1.46503 * 119.99954 * 5.36477 * 18 16 2 20 20 C 1.46499 * 120.00140 * 185.36432 * 18 16 2 21 21 C 1.50697 * 109.47231 * 89.99924 * 20 18 16 22 22 H 1.08000 * 120.00074 * 0.02562 * 21 20 18 23 23 C 1.37876 * 120.00245 * 179.97438 * 21 20 18 24 24 N 1.31510 * 119.99959 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00101 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47425 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47293 * 119.99917 * 25 23 21 28 28 H 1.48498 * 109.47388 * 240.00158 * 25 23 21 29 29 H 1.09000 * 109.47625 * 186.13795 * 1 2 3 30 30 H 1.09005 * 109.47109 * 306.13485 * 1 2 3 31 31 H 1.09000 * 109.47286 * 66.12978 * 1 2 3 32 32 H 1.09001 * 109.46866 * 180.02562 * 9 7 5 33 33 H 1.08995 * 109.47063 * 299.99624 * 9 7 5 34 34 H 1.08997 * 109.47206 * 60.00479 * 9 7 5 35 35 H 1.08010 * 125.89728 * 0.26554 * 11 10 7 36 36 H 1.09001 * 109.47183 * 269.97749 * 14 13 12 37 37 H 1.09005 * 109.47057 * 29.97149 * 14 13 12 38 38 H 1.08999 * 109.47328 * 149.97102 * 14 13 12 39 39 H 1.08004 * 126.12680 * 179.97438 * 15 13 12 40 40 H 1.09004 * 109.46911 * 84.82345 * 19 18 16 41 41 H 1.09000 * 109.46909 * 204.82024 * 19 18 16 42 42 H 1.08998 * 109.46867 * 324.82514 * 19 18 16 43 43 H 1.08998 * 109.47226 * 210.00129 * 20 18 16 44 44 H 1.09006 * 109.47238 * 330.00082 * 20 18 16 45 45 H 0.97000 * 120.00352 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2172 0.0639 2.2810 6 8 1.9974 1.2516 2.2506 7 6 2.7183 -0.5774 3.5494 8 1 2.0088 -1.3371 3.8773 9 6 4.0783 -1.2283 3.2889 10 6 2.8604 0.4726 4.6210 11 6 3.6855 1.6005 4.5637 12 7 3.5423 2.2688 5.6793 13 7 2.6205 1.5859 6.4834 14 6 2.1729 1.9929 7.8176 15 6 2.2169 0.4875 5.8113 16 6 2.0322 -0.7104 -1.2305 17 8 2.4734 -1.8368 -1.1429 18 7 1.9911 -0.0941 -2.4284 19 6 1.5689 1.3059 -2.5177 20 6 2.3686 -0.8242 -3.6411 21 6 1.1504 -1.4917 -4.2253 22 1 0.1908 -1.3827 -3.7419 23 6 1.2606 -2.2408 -5.3776 24 7 2.4290 -2.3732 -5.9666 25 14 -0.2495 -3.0676 -6.1021 26 1 -1.4327 -2.7657 -5.2569 27 1 -0.4813 -2.5576 -7.4775 28 1 -0.0355 -4.5364 -6.1484 29 1 -0.3634 -1.0217 0.1099 30 1 -0.3633 0.6060 0.8300 31 1 -0.3634 0.4159 -0.9398 32 1 4.4405 -1.6925 4.2062 33 1 3.9751 -1.9878 2.5140 34 1 4.7878 -0.4686 2.9610 35 1 4.3296 1.8729 3.7406 36 1 2.8286 1.5548 8.5701 37 1 2.2053 3.0796 7.8958 38 1 1.1520 1.6472 7.9795 39 1 1.5079 -0.2484 6.1611 40 1 2.4229 1.9558 -2.3267 41 1 1.1774 1.5043 -3.5155 42 1 0.7925 1.4991 -1.7776 43 1 2.7859 -0.1284 -4.3690 44 1 3.1135 -1.5804 -3.3929 45 1 2.5065 -2.8998 -6.7775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750557749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:54 Heat of formation + Delta-G solvation = -59.667367 kcal Electronic energy + Delta-G solvation = -27437.242677 eV Core-core repulsion = 23456.427712 eV Total energy + Delta-G solvation = -3980.814965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.39801 -41.67822 -40.46397 -37.64778 -36.66044 -35.58754 -34.83252 -33.62465 -32.83381 -30.40899 -29.68920 -27.57771 -27.37088 -26.36827 -25.59154 -24.15873 -22.50814 -21.99668 -20.77532 -20.35580 -18.78265 -18.68437 -18.23835 -17.60071 -17.34529 -17.12804 -16.67192 -16.29695 -16.18671 -15.91001 -15.26467 -15.14728 -14.85826 -14.72245 -14.22948 -14.01305 -13.95032 -13.67627 -13.59288 -13.54174 -13.38525 -13.31073 -13.23580 -13.08342 -12.80258 -12.66183 -12.57899 -12.52821 -12.50572 -12.20352 -11.87357 -11.68090 -11.53048 -11.32847 -10.64556 -10.59779 -10.35228 -9.51060 -9.39902 -8.22275 -6.37077 0.91777 1.15990 1.30250 1.38523 1.40738 1.52204 1.62415 1.71403 1.88331 2.36584 2.49463 3.07875 3.42676 3.54757 3.60563 3.81005 3.86692 3.99491 4.13697 4.20185 4.28836 4.32765 4.38278 4.48201 4.58392 4.59639 4.64449 4.73030 4.79369 4.83657 4.86052 4.95529 4.98199 5.08684 5.11373 5.21328 5.31471 5.40212 5.53162 5.63038 5.79379 6.04041 6.15346 6.56598 6.71289 6.72219 6.74956 7.21257 7.37007 8.85500 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030627 B = 0.002393 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.000114 B =11698.925259 C =11766.845196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.081 3.919 3 H 0.116 0.884 4 O -0.341 6.341 5 C 0.461 3.539 6 O -0.522 6.522 7 C 0.011 3.989 8 H 0.142 0.858 9 C -0.138 4.138 10 C -0.247 4.247 11 C 0.064 3.936 12 N -0.338 5.338 13 N -0.379 5.379 14 C 0.093 3.907 15 C 0.082 3.918 16 C 0.502 3.498 17 O -0.575 6.575 18 N -0.602 5.602 19 C 0.068 3.932 20 C 0.258 3.742 21 C -0.542 4.542 22 H 0.058 0.942 23 C 0.006 3.994 24 N -0.928 5.928 25 Si 0.970 3.030 26 H -0.264 1.264 27 H -0.271 1.271 28 H -0.282 1.282 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.172 0.828 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.218 0.782 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.029 0.971 44 H 0.001 0.999 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 8.074 26.905 28.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.133 0.867 4 O -0.257 6.257 5 C 0.305 3.695 6 O -0.410 6.410 7 C -0.009 4.009 8 H 0.159 0.841 9 C -0.195 4.195 10 C -0.259 4.259 11 C -0.122 4.122 12 N -0.160 5.160 13 N -0.161 5.161 14 C -0.047 4.047 15 C -0.066 4.066 16 C 0.289 3.711 17 O -0.455 6.455 18 N -0.334 5.334 19 C -0.074 4.074 20 C 0.138 3.862 21 C -0.580 4.580 22 H 0.077 0.923 23 C -0.193 4.193 24 N -0.568 5.568 25 Si 0.794 3.206 26 H -0.188 1.188 27 H -0.196 1.196 28 H -0.208 1.208 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.189 0.811 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.234 0.766 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.047 0.953 44 H 0.019 0.981 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.356 8.900 27.590 29.183 hybrid contribution -0.461 -0.969 -1.568 1.900 sum -3.817 7.931 26.022 27.470 Atomic orbital electron populations 1.22141 0.90114 1.04143 1.05043 1.22470 0.97271 0.96849 0.81196 0.86673 1.86654 1.76822 1.42302 1.19908 1.24594 0.73416 0.85909 0.85589 1.90625 1.48636 1.17428 1.84323 1.19208 1.00622 0.95963 0.85078 0.84051 1.21761 0.93538 1.00544 1.03692 1.19522 1.07552 1.01006 0.97802 1.23719 0.99071 0.93659 0.95737 1.77312 1.12255 1.21547 1.04878 1.48803 1.32952 1.18280 1.16045 1.22215 1.02160 1.03047 0.77253 1.22879 0.99431 0.91983 0.92267 1.20644 0.79002 0.86416 0.85047 1.90651 1.47520 1.20968 1.86347 1.48066 1.65044 1.13737 1.06557 1.22129 1.00913 0.79739 1.04628 1.18867 0.95260 0.91272 0.80848 1.21719 0.95131 1.31793 1.09404 0.92344 1.25886 0.99471 0.96713 0.97208 1.70061 1.25369 1.41209 1.20164 0.85332 0.78977 0.77917 0.78369 1.18816 1.19572 1.20816 0.91488 0.88991 0.88888 0.88799 0.91844 0.92964 0.81057 0.89240 0.89608 0.86449 0.76555 0.91118 0.90125 0.89192 0.95333 0.98111 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 9.19 71.98 0.66 -3.59 16 2 C 0.08 2.65 2.14 29.85 0.06 2.71 16 3 H 0.12 3.44 6.31 -2.39 -0.02 3.43 16 4 O -0.34 -11.07 9.37 -45.16 -0.42 -11.49 16 5 C 0.46 12.49 7.18 71.24 0.51 13.00 16 6 O -0.52 -15.93 14.61 21.95 0.32 -15.61 16 7 C 0.01 0.22 3.19 -12.29 -0.04 0.18 16 8 H 0.14 1.87 8.11 -2.39 -0.02 1.85 16 9 C -0.14 -2.58 9.01 71.98 0.65 -1.93 16 10 C -0.25 -4.80 4.36 -20.14 -0.09 -4.89 16 11 C 0.06 1.51 10.78 85.24 0.92 2.43 16 12 N -0.34 -8.18 12.58 -57.02 -0.72 -8.90 16 13 N -0.38 -6.27 4.01 -369.57 -1.48 -7.75 16 14 C 0.09 0.63 11.47 127.77 1.47 2.10 16 15 C 0.08 1.15 11.38 83.54 0.95 2.10 16 16 C 0.50 21.98 6.95 87.66 0.61 22.59 16 17 O -0.58 -30.95 16.13 15.21 0.25 -30.71 16 18 N -0.60 -26.08 2.86 -851.12 -2.43 -28.51 16 19 C 0.07 2.08 9.79 127.77 1.25 3.33 16 20 C 0.26 14.01 5.18 85.63 0.44 14.45 16 21 C -0.54 -30.90 9.39 25.60 0.24 -30.66 16 22 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 23 C 0.01 0.36 5.46 84.66 0.46 0.82 16 24 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 25 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 26 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.09 2.36 6.33 -2.39 -0.02 2.34 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.38 8.11 -2.39 -0.02 1.36 16 34 H 0.05 1.05 8.02 -2.39 -0.02 1.03 16 35 H 0.17 4.00 8.06 -2.91 -0.02 3.98 16 36 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.22 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.08 2.49 8.03 -2.39 -0.02 2.47 16 42 H 0.09 2.21 4.92 -2.39 -0.01 2.20 16 43 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 44 H 0.00 0.05 7.36 -2.38 -0.02 0.03 16 45 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -83.75 383.66 6.91 -76.84 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.99 Total: 12.73 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 8.10 Total: 22.65 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -4.35 Total: -100.87 kcal Atomic # 8 Polarization: -57.96 SS G_CDS: 0.14 Total: -57.81 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -83.75 6.91 -76.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750557749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.173 kcal (2) G-P(sol) polarization free energy of solvation -83.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds