Wall clock time and date at job start Tue Mar 31 2020 13:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47016 * 2 1 4 4 N 1.46507 * 109.46934 * 180.02562 * 3 2 1 5 5 N 1.39932 * 125.73970 * 270.16430 * 4 3 2 6 6 C 1.30436 * 108.91486 * 180.25349 * 5 4 3 7 7 C 1.50694 * 125.99083 * 179.80627 * 6 5 4 8 8 C 1.41346 * 108.01158 * 359.76659 * 6 5 4 9 9 C 1.47281 * 126.42254 * 179.97438 * 8 6 5 10 10 O 1.21525 * 120.00305 * 270.01899 * 9 8 6 11 11 O 1.34755 * 120.00242 * 90.02556 * 9 8 6 12 12 C 1.45195 * 117.00167 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47114 * 180.02562 * 12 11 9 14 14 O 1.21283 * 119.99861 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00022 * 180.02562 * 13 12 11 16 16 C 1.46496 * 119.99831 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47188 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99914 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00064 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00309 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99740 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47182 * 90.00032 * 21 19 17 23 23 H 1.48500 * 109.47065 * 209.99616 * 21 19 17 24 24 H 1.48495 * 109.47362 * 330.00390 * 21 19 17 25 25 C 1.34217 * 125.74300 * 90.00172 * 4 3 2 26 26 C 1.50703 * 126.29755 * 0.02562 * 25 4 3 27 27 H 1.09003 * 109.47073 * 299.99783 * 1 2 3 28 28 H 1.08997 * 109.47266 * 59.99967 * 1 2 3 29 29 H 1.09003 * 109.47225 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46644 * 240.00530 * 2 1 3 31 31 H 1.08998 * 109.47178 * 120.00575 * 2 1 3 32 32 H 1.08995 * 109.47367 * 60.00273 * 3 2 1 33 33 H 1.08997 * 109.47130 * 300.00117 * 3 2 1 34 34 H 1.09002 * 109.46923 * 269.95559 * 7 6 5 35 35 H 1.09000 * 109.47422 * 29.95239 * 7 6 5 36 36 H 1.08998 * 109.47223 * 149.95788 * 7 6 5 37 37 H 1.09000 * 109.47513 * 299.99766 * 12 11 9 38 38 H 1.09002 * 109.47502 * 60.00362 * 12 11 9 39 39 H 0.97003 * 119.99808 * 359.97438 * 15 13 12 40 40 H 1.08996 * 109.47404 * 299.99625 * 16 15 13 41 41 H 1.09000 * 109.47739 * 59.99774 * 16 15 13 42 42 H 0.96996 * 120.00468 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.47152 * 269.71277 * 26 25 4 44 44 H 1.09001 * 109.46980 * 149.71378 * 26 25 4 45 45 H 1.09004 * 109.47113 * 29.71359 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 7 4.3229 1.4390 1.1348 6 6 5.5712 1.4456 0.7568 7 6 6.7722 1.4489 1.6671 8 6 5.5999 1.4481 -0.6564 9 6 6.8025 1.4558 -1.5066 10 8 7.2934 2.5114 -1.8553 11 8 7.3585 0.2924 -1.8980 12 6 8.5417 0.3760 -2.7353 13 6 9.0187 -1.0136 -3.0711 14 8 8.4205 -1.9793 -2.6462 15 7 10.1105 -1.1832 -3.8429 16 6 10.5744 -2.5340 -4.1689 17 6 11.8025 -2.4473 -5.0381 18 1 12.1981 -1.4825 -5.3192 19 6 12.4216 -3.5997 -5.4736 20 7 11.9408 -4.7746 -5.1301 21 14 13.9434 -3.4922 -6.5516 22 1 15.1558 -3.4608 -5.6946 23 1 14.0005 -4.6757 -7.4467 24 1 13.8837 -2.2547 -7.3701 25 6 4.2886 1.4426 -1.0903 26 6 3.8233 1.4434 -2.5237 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 7.0575 2.4774 1.8883 35 1 6.5263 0.9325 2.5949 36 1 7.6014 0.9393 1.1764 37 1 8.2993 0.9086 -3.6549 38 1 9.3274 0.9110 -2.2018 39 1 10.5892 -0.4109 -4.1825 40 1 10.8166 -3.0668 -3.2494 41 1 9.7890 -3.0691 -4.7027 42 1 12.3766 -5.5853 -5.4361 43 1 3.7157 0.4160 -2.8713 44 1 4.5554 1.9617 -3.1430 45 1 2.8624 1.9532 -2.5935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760011819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:09 Heat of formation + Delta-G solvation = -88.050793 kcal Electronic energy + Delta-G solvation = -26584.038944 eV Core-core repulsion = 22601.993181 eV Total energy + Delta-G solvation = -3982.045762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.70280 -41.39925 -40.26310 -37.47992 -36.65314 -36.17260 -34.41003 -34.09984 -32.89498 -30.86532 -29.94525 -29.01627 -28.15043 -26.60440 -24.78258 -23.84219 -22.64426 -21.64204 -21.20079 -20.58010 -19.27926 -18.92032 -18.14336 -17.72271 -17.41420 -17.03051 -16.79190 -16.50290 -16.10275 -16.07081 -15.73491 -15.05335 -14.70761 -14.62790 -14.47481 -14.23264 -14.14064 -14.08531 -13.81483 -13.61014 -13.49221 -13.39551 -13.22198 -12.98128 -12.93061 -12.81060 -12.71157 -12.24903 -12.22165 -12.13581 -11.90260 -11.76864 -11.61383 -11.48925 -10.91063 -10.81070 -10.27292 -9.92205 -9.74644 -8.28709 -6.45270 0.49134 0.90847 1.00459 1.29068 1.44966 1.47070 1.56438 1.57848 1.63324 2.35787 2.61185 3.06516 3.32311 3.39448 3.67517 3.74418 3.83645 3.88602 3.95127 4.06311 4.10661 4.18299 4.22702 4.41345 4.46740 4.54662 4.62295 4.65010 4.75889 4.80150 4.90314 4.92161 5.07532 5.10624 5.13539 5.16978 5.22800 5.34656 5.38488 5.42969 5.64115 5.82911 5.83484 6.46506 6.53827 6.64007 6.79635 7.21502 7.37068 8.83391 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.002161 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.299443 B =12954.858925 C =13492.727413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.351 5.351 5 N -0.315 5.315 6 C 0.111 3.889 7 C -0.080 4.080 8 C -0.310 4.310 9 C 0.562 3.438 10 O -0.515 6.515 11 O -0.341 6.341 12 C 0.056 3.944 13 C 0.501 3.499 14 O -0.584 6.584 15 N -0.698 5.698 16 C 0.267 3.733 17 C -0.556 4.556 18 H 0.087 0.913 19 C 0.003 3.997 20 N -0.930 5.930 21 Si 0.985 3.015 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.255 1.255 25 C 0.149 3.851 26 C -0.103 4.103 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.413 0.587 40 H -0.009 1.009 41 H -0.007 1.007 42 H 0.269 0.731 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.020 17.481 8.333 28.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.001 3.999 4 N -0.129 5.129 5 N -0.137 5.137 6 C -0.055 4.055 7 C -0.139 4.139 8 C -0.323 4.323 9 C 0.405 3.595 10 O -0.404 6.404 11 O -0.256 6.256 12 C -0.021 4.021 13 C 0.286 3.714 14 O -0.465 6.465 15 N -0.349 5.349 16 C 0.144 3.856 17 C -0.594 4.594 18 H 0.105 0.895 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.809 3.191 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.178 1.178 25 C 0.016 3.984 26 C -0.161 4.161 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.146 0.854 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.249 0.751 40 H 0.009 0.991 41 H 0.011 0.989 42 H 0.078 0.922 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -22.214 16.904 9.505 29.488 hybrid contribution 1.690 -0.335 -1.136 2.064 sum -20.524 16.569 8.368 27.673 Atomic orbital electron populations 1.21667 0.92195 1.02980 1.03315 1.21896 0.98312 0.94946 1.02526 1.22335 0.71120 0.99536 1.06874 1.48655 1.07798 1.54265 1.02221 1.77063 1.00970 1.27232 1.08390 1.22662 0.94634 0.96509 0.91714 1.20381 0.91090 1.04478 0.97903 1.19081 0.91039 1.28695 0.93466 1.20285 0.82170 0.80785 0.76235 1.90816 1.62614 1.32731 1.54221 1.86750 1.41604 1.34732 1.62559 1.22831 0.87543 0.94211 0.97469 1.20671 0.80920 0.90949 0.78818 1.90692 1.57591 1.43777 1.54420 1.46031 1.27752 1.10996 1.50168 1.18623 0.93795 0.78995 0.94157 1.21615 1.11296 0.94360 1.32111 0.89508 1.26060 1.01405 0.94492 0.97671 1.70129 1.42110 0.98548 1.46084 0.85145 0.77766 0.78252 0.77979 1.19697 1.21066 1.17842 1.21773 0.88762 0.95025 0.92840 1.20808 1.04253 1.05337 0.85668 0.91596 0.90641 0.92002 0.91618 0.92910 0.87364 0.85371 0.88446 0.88898 0.90825 0.85388 0.85609 0.75051 0.99067 0.98950 0.92227 0.88166 0.89685 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.91 71.98 0.71 -0.18 16 2 C -0.14 -1.53 6.26 30.59 0.19 -1.33 16 3 C 0.12 1.29 6.21 86.38 0.54 1.82 16 4 N -0.35 -7.05 3.58 -332.96 -1.19 -8.24 16 5 N -0.32 -8.02 12.50 -46.65 -0.58 -8.60 16 6 C 0.11 2.94 7.27 43.53 0.32 3.26 16 7 C -0.08 -1.68 10.28 71.23 0.73 -0.95 16 8 C -0.31 -8.56 6.00 -20.16 -0.12 -8.68 16 9 C 0.56 16.89 7.12 70.20 0.50 17.39 16 10 O -0.52 -16.32 16.90 19.76 0.33 -15.98 16 11 O -0.34 -11.37 9.77 -50.27 -0.49 -11.86 16 12 C 0.06 1.66 5.95 71.24 0.42 2.09 16 13 C 0.50 20.30 7.91 87.66 0.69 21.00 16 14 O -0.58 -29.93 16.50 15.76 0.26 -29.67 16 15 N -0.70 -28.84 5.55 -466.78 -2.59 -31.43 16 16 C 0.27 14.41 5.43 85.63 0.46 14.88 16 17 C -0.56 -29.68 9.28 25.60 0.24 -29.44 16 18 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 19 C 0.00 0.19 5.46 84.66 0.46 0.65 16 20 N -0.93 -55.59 13.29 21.44 0.28 -55.31 16 21 Si 0.99 41.79 29.54 68.60 2.03 43.82 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 25 C 0.15 3.23 7.01 42.17 0.30 3.53 16 26 C -0.10 -1.41 9.93 71.24 0.71 -0.71 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.13 0.55 7.01 -2.39 -0.02 0.54 16 34 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.63 8.01 -2.39 -0.02 1.61 16 37 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.41 13.63 8.32 -92.71 -0.77 12.86 16 40 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.28 7.96 -2.39 -0.02 1.27 16 45 H 0.11 0.73 7.04 -2.38 -0.02 0.72 16 Total: -1.00 -80.87 393.03 4.44 -76.43 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.23 Total: 17.51 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 6.15 Total: 23.31 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -4.08 Total: -103.57 kcal Atomic # 8 Polarization: -57.62 SS G_CDS: 0.10 Total: -57.51 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -80.87 4.44 -76.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760011819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.617 kcal (2) G-P(sol) polarization free energy of solvation -80.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds