Wall clock time and date at job start Tue Mar 31 2020 14:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 N 1.46500 * 109.47049 * 120.00093 * 2 1 3 5 5 N 1.28445 * 125.19626 * 299.69381 * 4 2 1 6 6 C 1.30879 * 110.94023 * 179.81849 * 5 4 2 7 7 C 1.39643 * 107.87999 * 0.44072 * 6 5 4 8 8 C 1.36652 * 125.19446 * 120.00011 * 4 2 1 9 9 C 1.47009 * 126.89406 * 0.02562 * 8 4 2 10 10 O 1.21551 * 119.99760 * 180.02562 * 9 8 4 11 11 O 1.34814 * 119.99879 * 359.97438 * 9 8 4 12 12 C 1.45206 * 116.99726 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47248 * 30.00004 * 12 11 9 14 14 C 1.52998 * 109.46765 * 269.99907 * 12 11 9 15 15 C 1.50703 * 109.46893 * 150.00063 * 12 11 9 16 16 O 1.21274 * 119.99878 * 16.03138 * 15 12 11 17 17 N 1.34771 * 119.99673 * 196.02425 * 15 12 11 18 18 C 1.46507 * 120.00345 * 5.37125 * 17 15 12 19 19 C 1.46499 * 119.99970 * 185.36256 * 17 15 12 20 20 C 1.50697 * 109.46942 * 90.00533 * 19 17 15 21 21 H 1.08005 * 120.00257 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00056 * 180.02562 * 20 19 17 23 23 N 1.31514 * 120.00167 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99953 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47301 * 60.00004 * 24 22 20 26 26 H 1.48502 * 109.47024 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47000 * 299.99639 * 24 22 20 28 28 H 1.08995 * 109.47406 * 60.00011 * 1 2 3 29 29 H 1.08997 * 109.46968 * 299.99493 * 1 2 3 30 30 H 1.09003 * 109.46783 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46784 * 239.99756 * 2 1 3 32 32 H 1.08996 * 109.46870 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47031 * 300.00218 * 3 2 1 34 34 H 1.08997 * 109.46846 * 60.00432 * 3 2 1 35 35 H 1.08005 * 126.05727 * 180.15978 * 6 5 4 36 36 H 1.08004 * 127.31756 * 179.73985 * 7 6 5 37 37 H 1.08996 * 109.47471 * 306.13809 * 14 12 11 38 38 H 1.09002 * 109.47283 * 66.14311 * 14 12 11 39 39 H 1.09003 * 109.47307 * 186.13629 * 14 12 11 40 40 H 1.08992 * 109.47204 * 84.81592 * 18 17 15 41 41 H 1.09001 * 109.47249 * 204.82222 * 18 17 15 42 42 H 1.09002 * 109.46644 * 324.81927 * 18 17 15 43 43 H 1.09002 * 109.47338 * 210.00480 * 19 17 15 44 44 H 1.08994 * 109.47336 * 330.00629 * 19 17 15 45 45 H 0.96996 * 119.99946 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7749 -0.3367 2.4066 6 6 2.3451 -1.1527 3.2563 7 6 3.0315 -2.1234 2.5237 8 6 2.8073 -1.8064 1.1945 9 6 3.3164 -2.5255 0.0177 10 8 4.0128 -3.5112 0.1622 11 8 3.0102 -2.0922 -1.2216 12 6 3.5470 -2.8516 -2.3368 13 1 3.6564 -3.8963 -2.0459 14 6 4.9134 -2.2854 -2.7284 15 6 2.6071 -2.7527 -3.5107 16 8 1.7513 -1.8937 -3.5315 17 7 2.7178 -3.6188 -4.5372 18 6 3.6720 -4.7279 -4.4604 19 6 1.8838 -3.4515 -5.7300 20 6 2.5991 -2.5731 -6.7238 21 1 3.5773 -2.1793 -6.4906 22 6 2.0047 -2.2722 -7.9310 23 7 0.8138 -2.7521 -8.2153 24 14 2.8911 -1.1828 -9.1626 25 1 4.1796 -1.8143 -9.5447 26 1 2.0458 -1.0132 -10.3717 27 1 3.1528 0.1448 -8.5508 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.2972 -1.0845 4.3331 36 1 3.6135 -2.9464 2.9116 37 1 4.8237 -1.2152 -2.9141 38 1 5.6229 -2.4555 -1.9185 39 1 5.2674 -2.7825 -3.6316 40 1 3.2135 -5.5660 -3.9357 41 1 3.9503 -5.0382 -5.4676 42 1 4.5621 -4.4046 -3.9208 43 1 1.6916 -4.4261 -6.1787 44 1 0.9380 -2.9877 -5.4499 45 1 0.3958 -2.5407 -9.0647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767458118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:25 Heat of formation + Delta-G solvation = -38.031468 kcal Electronic energy + Delta-G solvation = -28368.333617 eV Core-core repulsion = 24388.456855 eV Total energy + Delta-G solvation = -3979.876762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.77353 -40.57977 -38.94966 -36.66544 -35.72582 -34.98042 -32.92819 -31.95816 -30.92227 -30.51707 -27.86164 -27.43104 -26.17414 -25.16001 -23.97482 -23.26061 -22.14983 -21.21823 -20.08727 -18.92147 -18.17823 -17.00852 -16.63687 -16.53592 -16.42225 -15.64999 -15.57716 -15.18747 -14.89011 -14.70119 -14.42396 -14.06444 -13.67754 -13.51707 -13.20642 -13.14534 -12.93144 -12.46067 -12.35614 -12.28339 -12.25745 -12.13638 -11.84630 -11.65961 -11.52948 -11.44339 -11.29909 -10.99218 -10.88341 -10.86993 -10.65341 -10.60221 -10.23906 -9.74611 -9.43966 -9.24145 -9.02907 -8.51173 -7.80938 -6.12331 -4.18173 0.87617 2.11113 2.35559 2.39791 2.78107 3.12771 3.26532 3.31504 3.34340 3.77032 4.21475 4.36592 4.44847 4.72559 4.74330 4.76183 4.92042 4.98899 4.99909 5.16745 5.22292 5.28439 5.44139 5.45494 5.47215 5.56002 5.58922 5.61227 5.64704 5.80040 5.80622 5.97032 6.00870 6.02578 6.15844 6.19170 6.29619 6.57808 6.90497 7.31836 7.37594 7.46868 7.82939 7.88148 8.12402 8.19980 8.73993 8.89837 9.47202 10.95713 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.003351 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.483181 B = 8353.616784 C = 9185.356894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 C -0.158 4.158 4 N -0.249 5.249 5 N -0.261 5.261 6 C -0.014 4.014 7 C -0.151 4.151 8 C -0.030 4.030 9 C 0.540 3.460 10 O -0.492 6.492 11 O -0.328 6.328 12 C 0.070 3.930 13 H 0.106 0.894 14 C -0.166 4.166 15 C 0.511 3.489 16 O -0.522 6.522 17 N -0.594 5.594 18 C 0.072 3.928 19 C 0.246 3.754 20 C -0.532 4.532 21 H 0.058 0.942 22 C 0.063 3.937 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.139 0.861 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.189 0.811 36 H 0.166 0.834 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.330 1.529 18.671 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.026 3.974 3 C -0.215 4.215 4 N -0.040 5.040 5 N -0.095 5.095 6 C -0.188 4.188 7 C -0.180 4.180 8 C -0.155 4.155 9 C 0.383 3.617 10 O -0.378 6.378 11 O -0.244 6.244 12 C 0.012 3.988 13 H 0.124 0.876 14 C -0.223 4.223 15 C 0.295 3.705 16 O -0.398 6.398 17 N -0.327 5.327 18 C -0.072 4.072 19 C 0.128 3.872 20 C -0.571 4.571 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.726 3.274 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.157 0.843 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.206 0.794 36 H 0.183 0.817 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.218 2.672 18.258 18.928 hybrid contribution 1.134 -0.381 -0.745 1.409 sum 5.351 2.291 17.513 18.455 Atomic orbital electron populations 1.22090 0.92242 1.03417 1.03683 1.22245 0.96707 0.94782 0.83641 1.22112 1.01811 0.93793 1.03826 1.46401 1.33301 1.18490 1.05842 1.73121 1.21571 1.25030 0.89807 1.23601 1.00786 0.94337 1.00072 1.22174 1.03921 1.02413 0.89502 1.20679 1.05896 0.95277 0.93685 1.19757 0.77548 0.81950 0.82479 1.90869 1.35560 1.24946 1.86467 1.86632 1.69342 1.54335 1.14093 1.22784 0.94416 0.97328 0.84260 0.87643 1.22179 0.93678 1.03328 1.03106 1.19694 0.84779 0.82835 0.83163 1.90677 1.35169 1.34818 1.79138 1.48077 1.39992 1.26538 1.18138 1.21858 0.92299 0.89505 1.03512 1.19372 0.90798 0.97504 0.79544 1.21376 1.03812 1.31129 1.00748 0.92393 1.24933 0.94905 0.96016 0.98119 1.69917 1.14581 1.44729 1.23924 0.86546 0.79422 0.81072 0.80317 1.20192 1.21118 1.20136 0.89621 0.91318 0.91865 0.84338 0.92028 0.89711 0.91176 0.79406 0.81678 0.90596 0.91111 0.89240 0.93307 0.89966 0.92201 0.94607 0.93546 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.38 37.16 0.35 -1.47 16 2 C 0.13 1.58 3.57 -67.93 -0.24 1.34 16 3 C -0.16 -1.67 9.37 37.16 0.35 -1.32 16 4 N -0.25 -3.26 3.09 -50.71 -0.16 -3.42 16 5 N -0.26 -3.23 11.58 30.59 0.35 -2.87 16 6 C -0.01 -0.14 12.03 -17.43 -0.21 -0.35 16 7 C -0.15 -1.70 10.85 -38.97 -0.42 -2.12 16 8 C -0.03 -0.41 6.96 -82.08 -0.57 -0.98 16 9 C 0.54 8.08 7.91 34.28 0.27 8.35 16 10 O -0.49 -7.80 16.18 -19.30 -0.31 -8.11 16 11 O -0.33 -5.23 6.61 -47.33 -0.31 -5.54 16 12 C 0.07 1.11 2.14 -27.88 -0.06 1.05 16 13 H 0.11 1.54 6.32 -51.93 -0.33 1.21 16 14 C -0.17 -2.23 9.19 37.16 0.34 -1.89 16 15 C 0.51 10.34 6.95 -10.99 -0.08 10.27 16 16 O -0.52 -12.54 16.13 -13.54 -0.22 -12.76 16 17 N -0.59 -12.10 2.86 -182.96 -0.52 -12.62 16 18 C 0.07 1.09 9.79 59.85 0.59 1.67 16 19 C 0.25 6.21 5.18 -5.20 -0.03 6.18 16 20 C -0.53 -14.48 9.39 -34.44 -0.32 -14.80 16 21 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 24 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.14 2.04 5.07 -51.93 -0.26 1.77 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.19 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.17 1.52 8.06 -52.48 -0.42 1.09 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.15 6.33 -51.93 -0.33 0.82 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 42 H 0.06 0.75 4.92 -51.93 -0.26 0.49 16 43 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 44 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 45 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -32.91 380.36 -6.44 -39.35 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.59 Total: 1.62 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -0.13 Total: 7.57 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.41 Total: -44.00 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.84 Total: -26.40 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.91 -6.44 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767458118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.321 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds