Wall clock time and date at job start Tue Mar 31 2020 14:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 N 1.46500 * 109.47049 * 120.00093 * 2 1 3 5 5 N 1.28445 * 125.19626 * 299.69381 * 4 2 1 6 6 C 1.30879 * 110.94023 * 179.81849 * 5 4 2 7 7 C 1.39643 * 107.87999 * 0.44072 * 6 5 4 8 8 C 1.36652 * 125.19446 * 120.00011 * 4 2 1 9 9 C 1.47009 * 126.89406 * 0.02562 * 8 4 2 10 10 O 1.21551 * 119.99760 * 180.02562 * 9 8 4 11 11 O 1.34814 * 119.99879 * 359.97438 * 9 8 4 12 12 C 1.45206 * 116.99726 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47248 * 30.00004 * 12 11 9 14 14 C 1.52998 * 109.46765 * 269.99907 * 12 11 9 15 15 C 1.50703 * 109.46893 * 150.00063 * 12 11 9 16 16 O 1.21274 * 119.99878 * 16.03138 * 15 12 11 17 17 N 1.34771 * 119.99673 * 196.02425 * 15 12 11 18 18 C 1.46507 * 120.00345 * 5.37125 * 17 15 12 19 19 C 1.46499 * 119.99970 * 185.36256 * 17 15 12 20 20 C 1.50697 * 109.46942 * 90.00533 * 19 17 15 21 21 H 1.08005 * 120.00257 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00056 * 180.02562 * 20 19 17 23 23 N 1.31514 * 120.00167 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99953 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47301 * 60.00004 * 24 22 20 26 26 H 1.48502 * 109.47024 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47000 * 299.99639 * 24 22 20 28 28 H 1.08995 * 109.47406 * 60.00011 * 1 2 3 29 29 H 1.08997 * 109.46968 * 299.99493 * 1 2 3 30 30 H 1.09003 * 109.46783 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46784 * 239.99756 * 2 1 3 32 32 H 1.08996 * 109.46870 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47031 * 300.00218 * 3 2 1 34 34 H 1.08997 * 109.46846 * 60.00432 * 3 2 1 35 35 H 1.08005 * 126.05727 * 180.15978 * 6 5 4 36 36 H 1.08004 * 127.31756 * 179.73985 * 7 6 5 37 37 H 1.08996 * 109.47471 * 306.13809 * 14 12 11 38 38 H 1.09002 * 109.47283 * 66.14311 * 14 12 11 39 39 H 1.09003 * 109.47307 * 186.13629 * 14 12 11 40 40 H 1.08992 * 109.47204 * 84.81592 * 18 17 15 41 41 H 1.09001 * 109.47249 * 204.82222 * 18 17 15 42 42 H 1.09002 * 109.46644 * 324.81927 * 18 17 15 43 43 H 1.09002 * 109.47338 * 210.00480 * 19 17 15 44 44 H 1.08994 * 109.47336 * 330.00629 * 19 17 15 45 45 H 0.96996 * 119.99946 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7749 -0.3367 2.4066 6 6 2.3451 -1.1527 3.2563 7 6 3.0315 -2.1234 2.5237 8 6 2.8073 -1.8064 1.1945 9 6 3.3164 -2.5255 0.0177 10 8 4.0128 -3.5112 0.1622 11 8 3.0102 -2.0922 -1.2216 12 6 3.5470 -2.8516 -2.3368 13 1 3.6564 -3.8963 -2.0459 14 6 4.9134 -2.2854 -2.7284 15 6 2.6071 -2.7527 -3.5107 16 8 1.7513 -1.8937 -3.5315 17 7 2.7178 -3.6188 -4.5372 18 6 3.6720 -4.7279 -4.4604 19 6 1.8838 -3.4515 -5.7300 20 6 2.5991 -2.5731 -6.7238 21 1 3.5773 -2.1793 -6.4906 22 6 2.0047 -2.2722 -7.9310 23 7 0.8138 -2.7521 -8.2153 24 14 2.8911 -1.1828 -9.1626 25 1 4.1796 -1.8143 -9.5447 26 1 2.0458 -1.0132 -10.3717 27 1 3.1528 0.1448 -8.5508 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.2972 -1.0845 4.3331 36 1 3.6135 -2.9464 2.9116 37 1 4.8237 -1.2152 -2.9141 38 1 5.6229 -2.4555 -1.9185 39 1 5.2674 -2.7825 -3.6316 40 1 3.2135 -5.5660 -3.9357 41 1 3.9503 -5.0382 -5.4676 42 1 4.5621 -4.4046 -3.9208 43 1 1.6916 -4.4261 -6.1787 44 1 0.9380 -2.9877 -5.4499 45 1 0.3958 -2.5407 -9.0647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767458118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:25 Heat of formation + Delta-G solvation = -57.194741 kcal Electronic energy + Delta-G solvation = -28369.164599 eV Core-core repulsion = 24388.456855 eV Total energy + Delta-G solvation = -3980.707744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.69441 -41.83719 -40.47069 -37.87842 -36.71524 -36.66016 -34.86705 -33.29549 -31.96103 -31.41067 -29.71138 -28.33306 -27.60440 -26.40403 -25.50880 -24.32870 -23.56330 -22.19354 -21.16154 -20.44656 -19.20398 -18.69050 -18.29987 -17.86133 -17.59877 -17.11371 -16.66369 -16.59306 -16.17819 -16.07892 -15.81558 -15.09737 -14.87241 -14.69149 -14.35349 -14.32102 -14.08031 -14.01803 -13.68333 -13.58174 -13.36445 -13.20867 -13.17890 -13.14309 -12.89881 -12.75454 -12.54018 -12.45991 -12.45045 -12.19807 -12.07782 -11.95810 -11.74124 -11.59903 -10.66161 -10.64097 -10.39443 -10.12350 -9.53336 -8.23119 -6.38077 -0.15262 0.97619 1.36675 1.38531 1.42132 1.48147 1.49087 1.57659 1.80331 2.27049 2.41572 3.07317 3.18697 3.35439 3.47603 3.70846 3.77706 3.81723 3.92355 4.06923 4.19328 4.27644 4.39583 4.51699 4.54990 4.56808 4.58850 4.63188 4.68807 4.80023 4.83645 4.88423 4.92971 5.04077 5.06381 5.08873 5.10921 5.20471 5.45493 5.50427 5.67894 5.77097 6.02666 6.29775 6.57078 6.70767 6.97903 7.17014 7.35005 8.84201 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.003351 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.483181 B = 8353.616784 C = 9185.356894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 C -0.150 4.150 4 N -0.257 5.257 5 N -0.274 5.274 6 C -0.004 4.004 7 C -0.140 4.140 8 C -0.060 4.060 9 C 0.542 3.458 10 O -0.504 6.504 11 O -0.338 6.338 12 C 0.080 3.920 13 H 0.123 0.877 14 C -0.160 4.160 15 C 0.503 3.497 16 O -0.572 6.572 17 N -0.599 5.599 18 C 0.065 3.935 19 C 0.260 3.740 20 C -0.545 4.545 21 H 0.059 0.941 22 C 0.009 3.991 23 N -0.928 5.928 24 Si 0.967 3.033 25 H -0.260 1.260 26 H -0.281 1.281 27 H -0.276 1.276 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.115 0.885 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.228 0.772 36 H 0.187 0.813 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.028 0.972 44 H 0.002 0.998 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.379 1.624 20.192 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.023 3.977 3 C -0.208 4.208 4 N -0.049 5.049 5 N -0.109 5.109 6 C -0.178 4.178 7 C -0.169 4.169 8 C -0.185 4.185 9 C 0.386 3.614 10 O -0.391 6.391 11 O -0.254 6.254 12 C 0.022 3.978 13 H 0.141 0.859 14 C -0.217 4.217 15 C 0.290 3.710 16 O -0.451 6.451 17 N -0.331 5.331 18 C -0.076 4.076 19 C 0.139 3.861 20 C -0.583 4.583 21 H 0.078 0.922 22 C -0.190 4.190 23 N -0.568 5.568 24 Si 0.791 3.209 25 H -0.184 1.184 26 H -0.206 1.206 27 H -0.201 1.201 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.245 0.755 36 H 0.204 0.796 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.046 0.954 44 H 0.020 0.980 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.306 2.733 19.794 20.953 hybrid contribution 0.453 -0.458 -1.106 1.280 sum 6.758 2.275 18.688 20.002 Atomic orbital electron populations 1.22044 0.91886 1.02587 1.04355 1.22178 0.97012 0.95499 0.83041 1.22064 1.01546 0.92641 1.04531 1.46398 1.33769 1.18642 1.06088 1.73121 1.22131 1.25842 0.89772 1.24291 0.99059 0.92940 1.01538 1.22566 1.03170 1.02699 0.88486 1.20840 1.07420 0.96199 0.94019 1.19967 0.77259 0.81873 0.82318 1.90845 1.36284 1.25439 1.86521 1.86675 1.69718 1.54472 1.14580 1.22668 0.93808 0.98608 0.82713 0.85902 1.22187 0.92436 1.02707 1.04356 1.20484 0.84692 0.81758 0.84087 1.90645 1.37320 1.36783 1.80354 1.48046 1.40273 1.28008 1.16823 1.22165 0.92498 0.88557 1.04408 1.18851 0.89844 0.96275 0.81081 1.21675 1.03944 1.31380 1.01334 0.92234 1.25848 0.95618 0.97336 1.00190 1.70044 1.16096 1.46051 1.24576 0.85473 0.78792 0.78911 0.77691 1.18409 1.20645 1.20120 0.89286 0.90222 0.93403 0.86787 0.92316 0.88996 0.90395 0.75546 0.79612 0.91495 0.88796 0.88275 0.90978 0.90091 0.88999 0.95366 0.98035 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.38 71.98 0.68 -2.92 16 2 C 0.12 3.13 3.57 44.99 0.16 3.29 16 3 C -0.15 -3.15 9.37 71.98 0.67 -2.48 16 4 N -0.26 -6.59 3.09 -314.33 -0.97 -7.56 16 5 N -0.27 -6.33 11.58 -57.15 -0.66 -6.99 16 6 C 0.00 -0.07 12.03 85.17 1.02 0.95 16 7 C -0.14 -2.82 10.85 22.67 0.25 -2.57 16 8 C -0.06 -1.58 6.96 40.75 0.28 -1.30 16 9 C 0.54 15.85 7.91 70.12 0.55 16.41 16 10 O -0.50 -15.18 16.18 19.67 0.32 -14.86 16 11 O -0.34 -10.84 6.61 -51.02 -0.34 -11.17 16 12 C 0.08 2.47 2.14 29.85 0.06 2.54 16 13 H 0.12 3.37 6.32 -2.39 -0.02 3.35 16 14 C -0.16 -4.03 9.19 71.98 0.66 -3.37 16 15 C 0.50 20.78 6.95 87.66 0.61 21.39 16 16 O -0.57 -28.88 16.13 15.25 0.25 -28.63 16 17 N -0.60 -24.68 2.86 -851.15 -2.43 -27.11 16 18 C 0.07 1.88 9.79 127.77 1.25 3.13 16 19 C 0.26 13.63 5.18 85.63 0.44 14.07 16 20 C -0.54 -30.19 9.39 25.60 0.24 -29.94 16 21 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 22 C 0.01 0.52 5.46 84.65 0.46 0.99 16 23 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 24 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 3.53 5.07 -2.39 -0.01 3.52 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.23 1.97 8.06 -2.91 -0.02 1.94 16 36 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.10 2.29 6.33 -2.39 -0.02 2.28 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 2.36 8.03 -2.39 -0.02 2.34 16 42 H 0.09 2.04 4.92 -2.39 -0.01 2.03 16 43 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 44 H 0.00 0.09 7.35 -2.39 -0.02 0.07 16 45 H 0.27 14.91 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -73.65 380.36 6.82 -66.83 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 1.00 Total: 18.52 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 7.35 Total: 20.20 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -3.78 Total: -96.34 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: 0.23 Total: -54.66 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -73.65 6.82 -66.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767458118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.636 kcal (2) G-P(sol) polarization free energy of solvation -73.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds