Wall clock time and date at job start Tue Mar 31 2020 14:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47351 * 2 1 4 4 N 1.46505 * 109.47011 * 119.99717 * 2 1 3 5 5 N 1.28440 * 125.19715 * 299.96334 * 4 2 1 6 6 C 1.30877 * 110.94212 * 180.02562 * 5 4 2 7 7 C 1.39634 * 107.88211 * 359.73575 * 6 5 4 8 8 C 1.36649 * 125.19508 * 120.00082 * 4 2 1 9 9 C 1.47010 * 126.89377 * 359.96781 * 8 4 2 10 10 O 1.21553 * 119.99918 * 179.97438 * 9 8 4 11 11 O 1.34822 * 119.99823 * 0.27193 * 9 8 4 12 12 C 1.45201 * 116.99797 * 179.72406 * 11 9 8 13 13 H 1.09008 * 109.47056 * 330.00266 * 12 11 9 14 14 C 1.52995 * 109.46835 * 90.00105 * 12 11 9 15 15 C 1.50699 * 109.47198 * 210.00144 * 12 11 9 16 16 O 1.21278 * 119.99722 * 0.02562 * 15 12 11 17 17 N 1.34773 * 119.99888 * 179.97438 * 15 12 11 18 18 C 1.46494 * 120.00095 * 0.02562 * 17 15 12 19 19 C 1.46502 * 119.99771 * 180.02562 * 17 15 12 20 20 C 1.50699 * 109.47072 * 90.00228 * 19 17 15 21 21 H 1.07998 * 120.00065 * 359.97438 * 20 19 17 22 22 C 1.37884 * 119.99984 * 179.97438 * 20 19 17 23 23 N 1.31515 * 119.99671 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99879 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47343 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47089 * 120.00248 * 24 22 20 27 27 H 1.48508 * 109.46936 * 239.99881 * 24 22 20 28 28 H 1.09002 * 109.47313 * 300.00276 * 1 2 3 29 29 H 1.08999 * 109.46690 * 60.00205 * 1 2 3 30 30 H 1.08998 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47771 * 239.99998 * 2 1 3 32 32 H 1.08990 * 109.47584 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47256 * 299.99933 * 3 2 1 34 34 H 1.09002 * 109.47138 * 59.99616 * 3 2 1 35 35 H 1.07998 * 126.05423 * 180.02562 * 6 5 4 36 36 H 1.07997 * 127.32482 * 180.31020 * 7 6 5 37 37 H 1.08999 * 109.47434 * 60.00250 * 14 12 11 38 38 H 1.08999 * 109.46961 * 179.97438 * 14 12 11 39 39 H 1.08996 * 109.47366 * 299.99994 * 14 12 11 40 40 H 1.08999 * 109.47320 * 89.99992 * 18 17 15 41 41 H 1.09003 * 109.47219 * 209.99938 * 18 17 15 42 42 H 1.08992 * 109.47342 * 329.99607 * 18 17 15 43 43 H 1.09005 * 109.47215 * 209.99843 * 19 17 15 44 44 H 1.08994 * 109.47029 * 330.00320 * 19 17 15 45 45 H 0.96998 * 119.99794 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 7 1.7709 -0.3394 2.4067 6 6 2.3459 -1.1520 3.2564 7 6 3.0268 -2.1265 2.5240 8 6 2.8073 -1.8063 1.1947 9 6 3.3155 -2.5262 0.0179 10 8 4.0127 -3.5113 0.1625 11 8 3.0131 -2.0902 -1.2215 12 6 3.5543 -2.8465 -2.3366 13 1 4.5022 -3.2981 -2.0434 14 6 2.5671 -3.9456 -2.7342 15 6 3.7780 -1.9245 -3.5075 16 8 3.5083 -0.7460 -3.4114 17 7 4.2787 -2.4095 -4.6609 18 6 4.6050 -3.8330 -4.7767 19 6 4.4967 -1.5131 -5.7990 20 6 5.8891 -0.9412 -5.7285 21 1 6.5459 -1.2175 -4.9169 22 6 6.3247 -0.0653 -6.7002 23 7 5.5250 0.2707 -7.6888 24 14 8.0510 0.6430 -6.6132 25 1 8.7445 0.1107 -5.4129 26 1 8.8058 0.2586 -7.8328 27 1 7.9747 2.1235 -6.5243 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8935 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 2.2979 -1.0838 4.3331 36 1 3.6037 -2.9531 2.9118 37 1 1.6194 -3.4941 -3.0274 38 1 2.9732 -4.5131 -3.5716 39 1 2.4053 -4.6125 -1.8874 40 1 3.7328 -4.3774 -5.1387 41 1 5.4298 -3.9608 -5.4778 42 1 4.8951 -4.2198 -3.8000 43 1 4.3795 -2.0706 -6.7284 44 1 3.7689 -0.7023 -5.7675 45 1 5.8313 0.8873 -8.3721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767458126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:28 Heat of formation + Delta-G solvation = -34.003173 kcal Electronic energy + Delta-G solvation = -28392.375805 eV Core-core repulsion = 24412.673723 eV Total energy + Delta-G solvation = -3979.702082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.75832 -40.57732 -38.97227 -36.64645 -35.71821 -35.04827 -33.01178 -31.90353 -30.91407 -30.50789 -27.74801 -27.42706 -26.35880 -25.08915 -23.95873 -23.25138 -22.15388 -21.20688 -20.08905 -18.97734 -18.17964 -17.00751 -16.62622 -16.50475 -16.40113 -15.69750 -15.50930 -15.30119 -14.88511 -14.65119 -14.37939 -14.02747 -13.69357 -13.51857 -13.27991 -13.14136 -12.98478 -12.52529 -12.37454 -12.29206 -12.26419 -12.19086 -11.77153 -11.65740 -11.52001 -11.38122 -11.21406 -10.96470 -10.87070 -10.84554 -10.66079 -10.60653 -10.22694 -9.69729 -9.42146 -9.22505 -9.02516 -8.50833 -7.81699 -6.11927 -4.16956 0.89593 2.12262 2.36763 2.41556 2.80348 3.15344 3.25733 3.33820 3.38264 3.76224 4.21903 4.38504 4.45199 4.71215 4.74465 4.76875 4.87272 4.98805 5.00407 5.15276 5.23084 5.28430 5.41986 5.44357 5.48226 5.55680 5.57394 5.59288 5.64286 5.75180 5.79109 5.90190 5.97406 6.06161 6.15268 6.18843 6.31015 6.59171 6.89663 7.30510 7.37589 7.48474 7.84003 7.89654 8.13260 8.19558 8.75207 8.91183 9.48529 10.96214 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.003455 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.922139 B = 8101.118164 C = 8682.369790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.126 3.874 3 C -0.157 4.157 4 N -0.249 5.249 5 N -0.261 5.261 6 C -0.013 4.013 7 C -0.151 4.151 8 C -0.029 4.029 9 C 0.541 3.459 10 O -0.492 6.492 11 O -0.327 6.327 12 C 0.070 3.930 13 H 0.109 0.891 14 C -0.176 4.176 15 C 0.510 3.490 16 O -0.521 6.521 17 N -0.593 5.593 18 C 0.074 3.926 19 C 0.247 3.753 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.898 3.102 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.138 0.862 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.189 0.811 36 H 0.166 0.834 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 -6.974 16.011 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.027 3.973 3 C -0.215 4.215 4 N -0.040 5.040 5 N -0.095 5.095 6 C -0.188 4.188 7 C -0.180 4.180 8 C -0.155 4.155 9 C 0.383 3.617 10 O -0.378 6.378 11 O -0.243 6.243 12 C 0.012 3.988 13 H 0.127 0.873 14 C -0.233 4.233 15 C 0.294 3.706 16 O -0.397 6.397 17 N -0.327 5.327 18 C -0.069 4.069 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.155 0.845 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.206 0.794 36 H 0.183 0.817 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.760 -5.527 15.640 19.247 hybrid contribution 1.683 -0.503 0.005 1.756 sum -8.077 -6.030 15.646 18.612 Atomic orbital electron populations 1.22116 0.92546 1.03047 1.03818 1.22227 0.96188 0.95214 0.83662 1.22089 1.02359 0.93425 1.03587 1.46380 1.33306 1.18523 1.05830 1.73114 1.21687 1.24948 0.89800 1.23593 1.00815 0.94297 1.00067 1.22172 1.03934 1.02396 0.89507 1.20673 1.06085 0.95017 0.93679 1.19742 0.77492 0.81980 0.82445 1.90872 1.35348 1.25146 1.86445 1.86609 1.68697 1.54906 1.14097 1.22724 0.99580 0.92079 0.84447 0.87302 1.22418 0.99874 0.97483 1.03573 1.19708 0.79299 0.88227 0.83381 1.90691 1.50964 1.16258 1.81781 1.48055 1.61473 1.09388 1.13758 1.21906 1.00869 0.82110 1.02062 1.19367 0.97462 0.88879 0.81443 1.21457 0.98614 1.27088 1.09687 0.92352 1.24928 0.97895 0.96026 0.95155 1.69935 1.35909 1.34573 1.12805 0.86435 0.84018 0.79049 0.77903 1.19782 1.20871 1.20810 0.91131 0.89811 0.92072 0.84454 0.91691 0.89673 0.91357 0.79406 0.81681 0.90955 0.88644 0.91215 0.92911 0.90211 0.92226 0.94550 0.93607 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.38 37.16 0.35 -1.26 16 2 C 0.13 1.59 3.57 -67.93 -0.24 1.35 16 3 C -0.16 -1.89 9.37 37.16 0.35 -1.54 16 4 N -0.25 -3.32 3.09 -50.70 -0.16 -3.47 16 5 N -0.26 -3.29 11.58 30.58 0.35 -2.93 16 6 C -0.01 -0.14 12.03 -17.44 -0.21 -0.35 16 7 C -0.15 -1.75 10.85 -38.97 -0.42 -2.17 16 8 C -0.03 -0.41 6.96 -82.07 -0.57 -0.98 16 9 C 0.54 8.30 7.91 34.29 0.27 8.57 16 10 O -0.49 -8.04 16.18 -19.31 -0.31 -8.35 16 11 O -0.33 -5.26 6.55 -47.51 -0.31 -5.57 16 12 C 0.07 1.10 2.18 -27.89 -0.06 1.04 16 13 H 0.11 1.68 6.42 -51.92 -0.33 1.34 16 14 C -0.18 -2.13 9.19 37.16 0.34 -1.79 16 15 C 0.51 10.29 7.15 -10.99 -0.08 10.21 16 16 O -0.52 -12.59 16.08 -14.10 -0.23 -12.82 16 17 N -0.59 -11.97 2.86 -182.96 -0.52 -12.49 16 18 C 0.07 1.09 8.80 59.84 0.53 1.62 16 19 C 0.25 6.20 5.16 -5.19 -0.03 6.17 16 20 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 21 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 24 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.14 2.01 5.07 -51.93 -0.26 1.74 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.01 4.53 -51.93 -0.24 0.77 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.63 6.95 -51.93 -0.36 0.27 16 41 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 42 H 0.06 0.74 6.01 -51.93 -0.31 0.42 16 43 H 0.04 0.91 8.07 -51.93 -0.42 0.50 16 44 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -33.56 377.80 -6.47 -40.03 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.50 Total: 1.03 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -0.20 Total: 7.53 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.41 Total: -44.09 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.85 Total: -26.74 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.56 -6.47 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767458126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.026 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds