Wall clock time and date at job start Tue Mar 31 2020 13:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00551 * 3 2 1 6 6 N 1.46496 * 109.47484 * 175.00385 * 3 2 1 7 7 N 1.28466 * 124.88048 * 59.69184 * 6 3 2 8 8 C 1.31858 * 110.06209 * 179.82531 * 7 6 3 9 9 C 1.47590 * 126.52157 * 180.17360 * 8 7 6 10 10 O 1.21489 * 119.99489 * 180.30407 * 9 8 7 11 11 O 1.34726 * 120.00115 * 0.30610 * 9 8 7 12 12 C 1.45195 * 117.00195 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47377 * 180.02562 * 12 11 9 14 14 O 1.21278 * 119.99869 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99680 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99556 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47024 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99925 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00105 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99575 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00159 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47074 * 59.99810 * 21 19 17 23 23 H 1.48496 * 109.47377 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47468 * 300.00144 * 21 19 17 25 25 C 1.41542 * 106.95285 * 0.43399 * 8 7 6 26 26 C 1.35050 * 124.88146 * 240.00267 * 6 3 2 27 27 C 1.50704 * 126.37661 * 0.02562 * 26 6 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 1.08998 * 109.47430 * 59.99652 * 5 3 2 34 34 H 1.08996 * 109.47271 * 180.02562 * 5 3 2 35 35 H 1.09008 * 109.46731 * 299.99706 * 5 3 2 36 36 H 1.09003 * 109.47232 * 300.00484 * 12 11 9 37 37 H 1.09003 * 109.47008 * 60.00199 * 12 11 9 38 38 H 0.96999 * 120.00329 * 359.97438 * 15 13 12 39 39 H 1.08997 * 109.46616 * 299.99262 * 16 15 13 40 40 H 1.08993 * 109.47166 * 59.99488 * 16 15 13 41 41 H 0.97008 * 119.99722 * 179.97438 * 20 19 17 42 42 H 1.08004 * 127.25114 * 179.74452 * 25 8 7 43 43 H 1.08996 * 109.47071 * 89.99985 * 27 26 6 44 44 H 1.09003 * 109.47061 * 210.00177 * 27 26 6 45 45 H 1.09002 * 109.47330 * 330.00108 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 7 3.5000 1.4443 0.1203 7 7 4.3063 0.8872 -0.7103 8 6 5.5531 1.0706 -0.3226 9 6 6.7668 0.5880 -1.0100 10 8 7.8633 0.8216 -0.5420 11 8 6.6585 -0.1114 -2.1564 12 6 7.8940 -0.5538 -2.7777 13 6 7.5774 -1.3136 -4.0401 14 8 6.4241 -1.4667 -4.3826 15 7 8.5759 -1.8229 -4.7884 16 6 8.2681 -2.5611 -6.0159 17 6 9.5505 -3.0204 -6.6608 18 1 10.4997 -2.7855 -6.2023 19 6 9.5118 -3.7404 -7.8360 20 7 8.3558 -4.0267 -8.3939 21 14 11.1012 -4.3090 -8.6357 22 1 11.8387 -5.1929 -7.6975 23 1 10.7893 -5.0584 -9.8792 24 1 11.9394 -3.1284 -8.9657 25 6 5.5059 1.8131 0.8815 26 6 4.1915 2.0268 1.1234 27 6 3.6083 2.7748 2.2945 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 0.5488 2.1253 -1.3968 34 1 1.9988 3.1541 -1.3075 35 1 2.0698 1.5875 -2.1492 36 1 8.5094 0.3126 -3.0202 37 1 8.4351 -1.2025 -2.0889 38 1 9.4984 -1.7002 -4.5146 39 1 7.6521 -3.4272 -5.7742 40 1 7.7278 -1.9117 -6.7046 41 1 8.3286 -4.5330 -9.2209 42 1 6.3426 2.1403 1.4811 43 1 3.4248 2.0803 3.1143 44 1 4.3088 3.5440 2.6197 45 1 2.6692 3.2412 1.9965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778155684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:20 Heat of formation + Delta-G solvation = -56.443407 kcal Electronic energy + Delta-G solvation = -26472.923984 eV Core-core repulsion = 22492.248820 eV Total energy + Delta-G solvation = -3980.675163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.03867 -40.21933 -38.58728 -36.92453 -36.18408 -34.18479 -33.16710 -32.36661 -32.09168 -29.68550 -29.06475 -27.42492 -26.76919 -25.61547 -24.04195 -22.50547 -21.42893 -21.19648 -19.86494 -19.66260 -17.68219 -17.23325 -17.13001 -16.70772 -16.17529 -16.04199 -15.58082 -15.35020 -15.01561 -14.50967 -14.46362 -14.21780 -14.05293 -13.58893 -13.48878 -13.17833 -13.05456 -12.87544 -12.72258 -12.63416 -12.40042 -12.25931 -12.05963 -11.94351 -11.70794 -11.46987 -11.27384 -11.00426 -10.89666 -10.87477 -10.76286 -10.59606 -10.31397 -9.41747 -9.39729 -9.17949 -9.09728 -8.73998 -7.92922 -6.16145 -4.23400 1.26549 1.77526 2.00738 2.56914 3.10036 3.26419 3.27256 3.31394 3.33037 3.85822 4.05817 4.22132 4.27488 4.35498 4.43873 4.48826 4.66290 4.82462 4.87633 5.02195 5.05162 5.08182 5.18973 5.19794 5.28048 5.30532 5.32387 5.36318 5.40000 5.42660 5.51935 5.59924 5.61499 5.80416 5.82508 6.11093 6.36174 6.51357 7.27674 7.37066 7.50672 7.56022 7.65587 7.89038 7.95966 8.55954 8.75884 9.02974 9.42746 10.93975 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.002173 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.850104 B =12881.214969 C =14072.306581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.145 3.855 4 H 0.109 0.891 5 C -0.167 4.167 6 N -0.270 5.270 7 N -0.218 5.218 8 C -0.005 4.005 9 C 0.556 3.444 10 O -0.504 6.504 11 O -0.314 6.314 12 C 0.048 3.952 13 C 0.500 3.500 14 O -0.531 6.531 15 N -0.708 5.708 16 C 0.252 3.748 17 C -0.545 4.545 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.173 4.173 26 C 0.005 3.995 27 C -0.083 4.083 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.393 0.607 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.267 0.733 42 H 0.164 0.836 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 14.560 23.123 30.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.045 3.955 4 H 0.127 0.873 5 C -0.225 4.225 6 N -0.061 5.061 7 N -0.054 5.054 8 C -0.162 4.162 9 C 0.398 3.602 10 O -0.391 6.391 11 O -0.227 6.227 12 C -0.030 4.030 13 C 0.283 3.717 14 O -0.408 6.408 15 N -0.358 5.358 16 C 0.131 3.869 17 C -0.583 4.583 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.200 4.200 26 C -0.118 4.118 27 C -0.142 4.142 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.226 0.774 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.182 0.818 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.193 13.891 21.926 30.076 hybrid contribution 1.986 0.032 0.223 1.999 sum -13.207 13.924 22.149 29.307 Atomic orbital electron populations 1.21791 0.93947 1.02871 1.02204 1.21905 0.96934 0.94120 1.04420 1.21775 0.73172 0.99335 1.01234 0.87315 1.22230 1.02757 1.01034 0.96464 1.45875 1.07495 1.36879 1.15827 1.73773 1.00159 1.15057 1.16449 1.20636 0.89858 1.07642 0.98078 1.19621 0.86994 0.74938 0.78647 1.90847 1.27088 1.55327 1.65829 1.86704 1.35309 1.64727 1.35964 1.22911 0.84911 1.00396 0.94746 1.19868 0.86623 0.80774 0.84463 1.90717 1.19978 1.58680 1.71423 1.46348 1.08067 1.54958 1.26437 1.19160 0.97023 0.91220 0.79450 1.21181 0.92201 1.36381 1.08542 0.91805 1.24955 0.96818 0.95553 0.96703 1.69970 1.24430 1.38505 1.19329 0.86444 0.82799 0.78843 0.78640 1.20042 1.21080 1.20037 1.21443 0.96051 1.04716 0.97836 1.21425 0.91769 1.03648 0.94953 1.20358 1.01247 0.99354 0.93195 0.91643 0.92487 0.91801 0.91184 0.89599 0.89844 0.91834 0.90201 0.88379 0.88376 0.77445 0.95282 0.95292 0.92353 0.81797 0.90259 0.89432 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.67 37.16 0.36 -0.38 16 2 C -0.14 -0.98 5.57 -26.73 -0.15 -1.13 16 3 C 0.14 1.02 3.02 -67.93 -0.21 0.81 16 4 H 0.11 0.45 6.55 -51.92 -0.34 0.11 16 5 C -0.17 -1.16 9.13 37.16 0.34 -0.82 16 6 N -0.27 -2.83 3.04 -50.66 -0.15 -2.98 16 7 N -0.22 -3.13 11.65 33.41 0.39 -2.74 16 8 C 0.00 -0.07 7.17 -82.78 -0.59 -0.66 16 9 C 0.56 9.22 7.97 34.55 0.28 9.49 16 10 O -0.50 -8.60 16.72 -19.26 -0.32 -8.92 16 11 O -0.31 -5.76 9.76 -47.24 -0.46 -6.22 16 12 C 0.05 0.80 5.95 36.01 0.21 1.01 16 13 C 0.50 10.59 7.91 -10.99 -0.09 10.51 16 14 O -0.53 -13.67 16.50 -14.10 -0.23 -13.91 16 15 N -0.71 -15.18 5.55 -61.47 -0.34 -15.52 16 16 C 0.25 6.74 5.43 -5.19 -0.03 6.72 16 17 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 18 H 0.06 1.61 7.60 -52.48 -0.40 1.22 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 21 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.17 -1.97 10.73 -39.36 -0.42 -2.39 16 26 C 0.00 0.05 6.92 -82.21 -0.57 -0.52 16 27 C -0.08 -0.38 9.92 36.01 0.36 -0.02 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.29 6.56 -51.93 -0.34 -0.06 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.38 6.56 -51.93 -0.34 0.04 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.39 7.07 8.32 -40.82 -0.34 6.73 16 39 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 42 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.21 7.02 -51.93 -0.36 -0.15 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -36.20 388.15 -7.24 -43.44 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.76 Total: 1.42 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.92 Total: 9.12 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.63 Total: -46.72 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -1.02 Total: -29.05 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.20 -7.24 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778155684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.002 kcal (2) G-P(sol) polarization free energy of solvation -36.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds