Wall clock time and date at job start Tue Mar 31 2020 13:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00551 * 3 2 1 6 6 N 1.46496 * 109.47484 * 175.00385 * 3 2 1 7 7 N 1.28466 * 124.88048 * 59.69184 * 6 3 2 8 8 C 1.31858 * 110.06209 * 179.82531 * 7 6 3 9 9 C 1.47590 * 126.52157 * 180.17360 * 8 7 6 10 10 O 1.21489 * 119.99489 * 180.30407 * 9 8 7 11 11 O 1.34726 * 120.00115 * 0.30610 * 9 8 7 12 12 C 1.45195 * 117.00195 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47377 * 180.02562 * 12 11 9 14 14 O 1.21278 * 119.99869 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99680 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99556 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47024 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99925 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00105 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99575 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00159 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47074 * 59.99810 * 21 19 17 23 23 H 1.48496 * 109.47377 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47468 * 300.00144 * 21 19 17 25 25 C 1.41542 * 106.95285 * 0.43399 * 8 7 6 26 26 C 1.35050 * 124.88146 * 240.00267 * 6 3 2 27 27 C 1.50704 * 126.37661 * 0.02562 * 26 6 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 1.08998 * 109.47430 * 59.99652 * 5 3 2 34 34 H 1.08996 * 109.47271 * 180.02562 * 5 3 2 35 35 H 1.09008 * 109.46731 * 299.99706 * 5 3 2 36 36 H 1.09003 * 109.47232 * 300.00484 * 12 11 9 37 37 H 1.09003 * 109.47008 * 60.00199 * 12 11 9 38 38 H 0.96999 * 120.00329 * 359.97438 * 15 13 12 39 39 H 1.08997 * 109.46616 * 299.99262 * 16 15 13 40 40 H 1.08993 * 109.47166 * 59.99488 * 16 15 13 41 41 H 0.97008 * 119.99722 * 179.97438 * 20 19 17 42 42 H 1.08004 * 127.25114 * 179.74452 * 25 8 7 43 43 H 1.08996 * 109.47071 * 89.99985 * 27 26 6 44 44 H 1.09003 * 109.47061 * 210.00177 * 27 26 6 45 45 H 1.09002 * 109.47330 * 330.00108 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 7 3.5000 1.4443 0.1203 7 7 4.3063 0.8872 -0.7103 8 6 5.5531 1.0706 -0.3226 9 6 6.7668 0.5880 -1.0100 10 8 7.8633 0.8216 -0.5420 11 8 6.6585 -0.1114 -2.1564 12 6 7.8940 -0.5538 -2.7777 13 6 7.5774 -1.3136 -4.0401 14 8 6.4241 -1.4667 -4.3826 15 7 8.5759 -1.8229 -4.7884 16 6 8.2681 -2.5611 -6.0159 17 6 9.5505 -3.0204 -6.6608 18 1 10.4997 -2.7855 -6.2023 19 6 9.5118 -3.7404 -7.8360 20 7 8.3558 -4.0267 -8.3939 21 14 11.1012 -4.3090 -8.6357 22 1 11.8387 -5.1929 -7.6975 23 1 10.7893 -5.0584 -9.8792 24 1 11.9394 -3.1284 -8.9657 25 6 5.5059 1.8131 0.8815 26 6 4.1915 2.0268 1.1234 27 6 3.6083 2.7748 2.2945 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 0.5488 2.1253 -1.3968 34 1 1.9988 3.1541 -1.3075 35 1 2.0698 1.5875 -2.1492 36 1 8.5094 0.3126 -3.0202 37 1 8.4351 -1.2025 -2.0889 38 1 9.4984 -1.7002 -4.5146 39 1 7.6521 -3.4272 -5.7742 40 1 7.7278 -1.9117 -6.7046 41 1 8.3286 -4.5330 -9.2209 42 1 6.3426 2.1403 1.4811 43 1 3.4248 2.0803 3.1143 44 1 4.3088 3.5440 2.6197 45 1 2.6692 3.2412 1.9965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778155684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:19 Heat of formation + Delta-G solvation = -81.025738 kcal Electronic energy + Delta-G solvation = -26473.989953 eV Core-core repulsion = 22492.248820 eV Total energy + Delta-G solvation = -3981.741133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.88669 -41.58699 -40.34371 -37.70616 -37.40631 -36.20635 -34.43586 -33.84071 -32.83880 -30.95913 -30.08768 -28.66672 -27.94531 -26.52867 -25.00097 -24.39119 -22.22872 -22.11445 -21.68386 -20.62468 -19.25542 -18.42825 -18.23395 -17.95647 -17.67355 -17.07862 -17.01325 -16.84642 -16.14463 -16.13022 -15.93170 -15.11818 -14.79053 -14.69379 -14.47145 -14.15967 -14.08658 -13.88744 -13.83928 -13.73084 -13.56501 -13.30938 -13.11686 -12.96763 -12.77496 -12.68723 -12.59333 -12.24737 -12.07322 -12.05382 -11.96817 -11.85835 -11.65391 -11.53691 -10.94797 -10.81670 -10.27383 -9.97271 -9.95682 -8.30148 -6.47216 0.15113 1.00866 1.03176 1.43388 1.47598 1.52038 1.53232 1.56645 1.98420 2.32930 2.53716 3.04725 3.17808 3.57087 3.63927 3.68118 3.72095 3.94135 3.95537 4.02101 4.02171 4.30826 4.36796 4.39829 4.49743 4.55947 4.69336 4.79240 4.84552 4.96965 5.01692 5.02886 5.07864 5.08164 5.11015 5.19682 5.23212 5.28795 5.38720 5.39838 5.61631 5.80402 5.84325 6.40516 6.61096 6.75364 6.88624 7.18876 7.33910 8.81911 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.002173 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.850104 B =12881.214969 C =14072.306581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.137 3.863 4 H 0.153 0.847 5 C -0.164 4.164 6 N -0.265 5.265 7 N -0.259 5.259 8 C -0.039 4.039 9 C 0.557 3.443 10 O -0.514 6.514 11 O -0.340 6.340 12 C 0.058 3.942 13 C 0.500 3.500 14 O -0.584 6.584 15 N -0.697 5.697 16 C 0.267 3.733 17 C -0.558 4.558 18 H 0.087 0.913 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.988 3.012 22 H -0.262 1.262 23 H -0.286 1.286 24 H -0.262 1.262 25 C -0.187 4.187 26 C 0.023 3.977 27 C -0.083 4.083 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.413 0.587 39 H -0.009 1.009 40 H -0.009 1.009 41 H 0.269 0.731 42 H 0.178 0.822 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.379 16.170 25.622 33.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.039 3.961 4 H 0.170 0.830 5 C -0.222 4.222 6 N -0.056 5.056 7 N -0.097 5.097 8 C -0.195 4.195 9 C 0.400 3.600 10 O -0.401 6.401 11 O -0.254 6.254 12 C -0.018 4.018 13 C 0.286 3.714 14 O -0.464 6.464 15 N -0.349 5.349 16 C 0.144 3.856 17 C -0.595 4.595 18 H 0.105 0.895 19 C -0.197 4.197 20 N -0.569 5.569 21 Si 0.810 3.190 22 H -0.186 1.186 23 H -0.211 1.211 24 H -0.186 1.186 25 C -0.214 4.214 26 C -0.101 4.101 27 C -0.141 4.141 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.250 0.750 39 H 0.009 0.991 40 H 0.009 0.991 41 H 0.078 0.922 42 H 0.196 0.804 43 H 0.115 0.885 44 H 0.121 0.879 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.676 15.522 24.463 32.477 hybrid contribution 1.694 -0.428 -0.488 1.814 sum -12.983 15.094 23.975 31.164 Atomic orbital electron populations 1.21777 0.91750 1.03124 1.03642 1.21854 0.98757 0.94052 1.02442 1.22204 0.71513 0.99554 1.02834 0.83009 1.22220 1.04322 1.00457 0.95177 1.46286 1.08402 1.35624 1.15302 1.73711 1.00677 1.16851 1.18428 1.20736 0.89516 1.09573 0.99629 1.19939 0.87806 0.74340 0.77902 1.90814 1.27516 1.55878 1.65924 1.86694 1.36205 1.65448 1.37097 1.22844 0.84882 1.01422 0.92691 1.20646 0.85518 0.79880 0.85397 1.90693 1.22217 1.60535 1.72960 1.46019 1.09455 1.54363 1.25030 1.18635 0.96581 0.89556 0.80786 1.21580 0.92777 1.36300 1.08888 0.89491 1.26091 1.00806 0.95412 0.97351 1.70139 1.27387 1.39419 1.19953 0.85166 0.77733 0.78692 0.77375 1.18622 1.21113 1.18607 1.21729 0.97772 1.04881 0.97019 1.22165 0.91000 1.01830 0.95077 1.20605 1.02420 0.99617 0.91441 0.92093 0.89974 0.91330 0.91566 0.93242 0.87080 0.91566 0.93771 0.85402 0.85411 0.75006 0.99062 0.99062 0.92184 0.80445 0.88484 0.87948 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 71.98 0.70 -0.47 16 2 C -0.13 -1.88 5.57 30.59 0.17 -1.71 16 3 C 0.14 1.71 3.02 44.99 0.14 1.84 16 4 H 0.15 0.59 6.55 -2.38 -0.02 0.58 16 5 C -0.16 -2.16 9.13 71.98 0.66 -1.50 16 6 N -0.26 -5.35 3.04 -314.20 -0.96 -6.31 16 7 N -0.26 -7.74 11.65 -48.21 -0.56 -8.31 16 8 C -0.04 -1.19 7.17 42.42 0.30 -0.88 16 9 C 0.56 18.89 7.97 70.29 0.56 19.45 16 10 O -0.51 -17.42 16.72 19.87 0.33 -17.09 16 11 O -0.34 -12.92 9.76 -49.98 -0.49 -13.40 16 12 C 0.06 1.93 5.95 71.24 0.42 2.35 16 13 C 0.50 21.85 7.91 87.66 0.69 22.54 16 14 O -0.58 -31.86 16.50 15.77 0.26 -31.60 16 15 N -0.70 -30.47 5.55 -466.79 -2.59 -33.06 16 16 C 0.27 14.95 5.43 85.63 0.46 15.42 16 17 C -0.56 -30.61 9.28 25.60 0.24 -30.38 16 18 H 0.09 4.27 7.60 -2.91 -0.02 4.25 16 19 C 0.00 0.17 5.46 84.65 0.46 0.64 16 20 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 21 Si 0.99 42.68 29.54 68.60 2.03 44.71 16 22 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 23 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 25 C -0.19 -4.11 10.73 22.42 0.24 -3.87 16 26 C 0.02 0.37 6.92 41.40 0.29 0.66 16 27 C -0.08 -0.41 9.92 71.24 0.71 0.30 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.07 0.49 6.56 -2.39 -0.02 0.48 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 0.80 6.56 -2.39 -0.02 0.78 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 38 H 0.41 14.52 8.32 -92.71 -0.77 13.75 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 42 H 0.18 3.21 8.06 -2.91 -0.02 3.18 16 43 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.09 0.07 7.02 -2.39 -0.02 0.05 16 Total: -1.00 -84.80 388.15 4.58 -80.21 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.24 Total: 16.89 kcal Atomic # 6 Polarization: 18.36 SS G_CDS: 6.04 Total: 24.40 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -3.82 Total: -104.12 kcal Atomic # 8 Polarization: -62.20 SS G_CDS: 0.10 Total: -62.09 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -84.80 4.58 -80.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778155684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.811 kcal (2) G-P(sol) polarization free energy of solvation -84.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds