Wall clock time and date at job start Tue Mar 31 2020 13:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09001 * 109.46922 * 305.00135 * 3 2 1 5 5 C 1.53006 * 109.47164 * 64.99887 * 3 2 1 6 6 N 1.46496 * 109.47194 * 184.99801 * 3 2 1 7 7 N 1.28469 * 124.88088 * 300.02661 * 6 3 2 8 8 C 1.31851 * 110.06260 * 179.97438 * 7 6 3 9 9 C 1.47584 * 126.52194 * 179.97438 * 8 7 6 10 10 O 1.21497 * 120.00033 * 180.02562 * 9 8 7 11 11 O 1.34730 * 120.00103 * 0.02719 * 9 8 7 12 12 C 1.45197 * 116.99673 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47027 * 179.97438 * 12 11 9 14 14 O 1.21283 * 119.99419 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00455 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00314 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47008 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00352 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99556 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99977 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99658 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47250 * 90.00004 * 21 19 17 23 23 H 1.48507 * 109.46906 * 209.99802 * 21 19 17 24 24 H 1.48502 * 109.47428 * 329.99667 * 21 19 17 25 25 C 1.41549 * 106.95616 * 0.02562 * 8 7 6 26 26 C 1.35047 * 124.87561 * 119.72141 * 6 3 2 27 27 C 1.50697 * 126.38268 * 0.02562 * 26 6 3 28 28 H 1.09000 * 109.46772 * 299.99985 * 1 2 3 29 29 H 1.08998 * 109.46554 * 60.00185 * 1 2 3 30 30 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46772 * 240.00015 * 2 1 3 32 32 H 1.08994 * 109.46772 * 120.00268 * 2 1 3 33 33 H 1.09001 * 109.47002 * 59.99738 * 5 3 2 34 34 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47050 * 300.00004 * 5 3 2 36 36 H 1.09002 * 109.47787 * 299.99699 * 12 11 9 37 37 H 1.09000 * 109.47349 * 60.00196 * 12 11 9 38 38 H 0.96996 * 120.00054 * 0.02562 * 15 13 12 39 39 H 1.09012 * 109.46613 * 300.00026 * 16 15 13 40 40 H 1.08997 * 109.47531 * 59.99430 * 16 15 13 41 41 H 0.97005 * 119.99823 * 180.02562 * 20 19 17 42 42 H 1.07992 * 127.25082 * 180.02562 * 25 8 7 43 43 H 1.08999 * 109.46995 * 90.00292 * 27 26 6 44 44 H 1.09003 * 109.47253 * 209.99651 * 27 26 6 45 45 H 1.08994 * 109.47219 * 330.00372 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 7 3.5001 1.4442 -0.1203 7 7 4.3066 0.8915 0.7130 8 6 5.5532 1.0697 0.3221 9 6 6.7667 0.5870 1.0094 10 8 7.8634 0.8206 0.5414 11 8 6.6585 -0.1126 2.1557 12 6 7.8940 -0.5560 2.7763 13 6 7.5775 -1.3158 4.0387 14 8 6.4241 -1.4689 4.3812 15 7 8.5759 -1.8252 4.7871 16 6 8.2682 -2.5643 6.0139 17 6 9.5505 -3.0234 6.6588 18 1 10.4997 -2.7885 6.2005 19 6 9.5117 -3.7433 7.8342 20 7 8.3558 -4.0289 8.3926 21 14 11.1012 -4.3130 8.6332 22 1 11.5816 -3.2720 9.5771 23 1 10.8578 -5.5775 9.3730 24 1 12.1278 -4.5424 7.5850 25 6 5.5060 1.8130 -0.8816 26 6 4.1913 2.0222 -1.1263 27 6 3.6078 2.7652 -2.3003 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0699 1.5875 2.1492 34 1 1.9982 3.1543 1.3072 35 1 0.5490 2.1253 1.3969 36 1 8.4345 -1.2049 2.0872 37 1 8.5101 0.3099 3.0188 38 1 9.4983 -1.7024 4.5134 39 1 7.7273 -1.9154 6.7029 40 1 7.6525 -3.4305 5.7716 41 1 8.3286 -4.5351 9.2196 42 1 6.3426 2.1398 -1.4813 43 1 3.5105 3.8216 -2.0497 44 1 4.2652 2.6556 -3.1629 45 1 2.6258 2.3562 -2.5376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778155685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:23 Heat of formation + Delta-G solvation = -56.515190 kcal Electronic energy + Delta-G solvation = -26473.238012 eV Core-core repulsion = 22492.559736 eV Total energy + Delta-G solvation = -3980.678276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.03830 -40.21842 -38.58663 -36.92493 -36.18314 -34.18556 -33.16636 -32.36760 -32.09263 -29.68314 -29.06681 -27.42427 -26.77020 -25.62124 -24.03984 -22.50656 -21.43032 -21.19533 -19.86494 -19.66254 -17.68391 -17.23324 -17.13246 -16.70661 -16.17227 -16.04720 -15.58076 -15.35072 -15.01592 -14.51319 -14.44861 -14.22063 -14.07316 -13.58662 -13.45812 -13.17342 -13.07179 -12.87218 -12.74827 -12.62527 -12.40206 -12.25744 -12.05476 -11.95196 -11.70919 -11.46842 -11.27743 -10.98775 -10.89694 -10.89159 -10.76221 -10.59671 -10.31374 -9.40407 -9.39724 -9.17917 -9.09770 -8.74546 -7.92975 -6.16459 -4.23569 1.26519 1.77468 2.00717 2.56914 3.10014 3.25332 3.27008 3.31506 3.34113 3.85912 4.05866 4.21996 4.27032 4.35336 4.44242 4.48808 4.66602 4.82117 4.87332 5.02946 5.04511 5.08172 5.19218 5.19621 5.27839 5.30588 5.32383 5.36361 5.39998 5.42660 5.51758 5.59822 5.61586 5.80262 5.82556 6.11120 6.36150 6.51343 7.27650 7.37115 7.50511 7.56029 7.65679 7.89008 7.95725 8.55952 8.75933 9.02983 9.42631 10.93709 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.002173 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.775040 B =12881.215484 C =14072.159666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.145 3.855 4 H 0.109 0.891 5 C -0.167 4.167 6 N -0.270 5.270 7 N -0.218 5.218 8 C -0.005 4.005 9 C 0.556 3.444 10 O -0.504 6.504 11 O -0.314 6.314 12 C 0.048 3.952 13 C 0.500 3.500 14 O -0.531 6.531 15 N -0.708 5.708 16 C 0.251 3.749 17 C -0.544 4.544 18 H 0.064 0.936 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.173 4.173 26 C 0.005 3.995 27 C -0.083 4.083 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.393 0.607 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.266 0.734 42 H 0.164 0.836 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.854 14.563 -23.137 30.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.045 3.955 4 H 0.127 0.873 5 C -0.224 4.224 6 N -0.061 5.061 7 N -0.054 5.054 8 C -0.162 4.162 9 C 0.398 3.602 10 O -0.391 6.391 11 O -0.227 6.227 12 C -0.030 4.030 13 C 0.283 3.717 14 O -0.408 6.408 15 N -0.358 5.358 16 C 0.131 3.869 17 C -0.582 4.582 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.201 4.201 26 C -0.118 4.118 27 C -0.142 4.142 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.226 0.774 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.182 0.818 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.187 13.898 -21.943 30.088 hybrid contribution 1.978 0.035 -0.211 1.989 sum -13.209 13.933 -22.154 29.316 Atomic orbital electron populations 1.21793 0.93945 1.02871 1.02203 1.21914 0.96941 0.94158 1.04427 1.21775 0.73172 0.99307 1.01261 0.87315 1.22222 1.02754 1.01027 0.96421 1.45875 1.07492 1.37131 1.15578 1.73772 1.00160 1.15143 1.16361 1.20633 0.89867 1.07631 0.98078 1.19623 0.86995 0.74947 0.78640 1.90849 1.27078 1.55341 1.65825 1.86705 1.35308 1.64710 1.35978 1.22910 0.84912 1.00385 0.94755 1.19871 0.86624 0.80777 0.84461 1.90718 1.19975 1.58686 1.71422 1.46345 1.08069 1.54930 1.26460 1.19165 0.97038 0.91211 0.79475 1.21216 0.92225 1.36291 1.08501 0.91751 1.24960 0.96812 0.95560 0.96719 1.69978 1.24388 1.38611 1.19247 0.86389 0.82777 0.78199 0.79386 1.20445 1.21007 1.19716 1.21447 0.96037 1.04599 0.97967 1.21427 0.91768 1.03691 0.94906 1.20356 1.01136 0.99212 0.93454 0.91795 0.92495 0.91642 0.91186 0.89595 0.90200 0.91831 0.89853 0.88373 0.88380 0.77444 0.95290 0.95279 0.92411 0.81799 0.90261 0.89427 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.67 37.16 0.36 -0.37 16 2 C -0.14 -0.99 5.57 -26.73 -0.15 -1.14 16 3 C 0.14 1.02 3.02 -67.93 -0.20 0.81 16 4 H 0.11 0.45 6.55 -51.93 -0.34 0.11 16 5 C -0.17 -1.16 9.12 37.16 0.34 -0.82 16 6 N -0.27 -2.82 3.04 -50.66 -0.15 -2.98 16 7 N -0.22 -3.13 11.65 33.41 0.39 -2.74 16 8 C 0.00 -0.07 7.17 -82.79 -0.59 -0.66 16 9 C 0.56 9.22 7.97 34.54 0.28 9.49 16 10 O -0.50 -8.60 16.72 -19.26 -0.32 -8.92 16 11 O -0.31 -5.76 9.77 -47.25 -0.46 -6.22 16 12 C 0.05 0.80 5.95 36.01 0.21 1.01 16 13 C 0.50 10.59 7.91 -10.98 -0.09 10.50 16 14 O -0.53 -13.67 16.50 -14.11 -0.23 -13.91 16 15 N -0.71 -15.18 5.55 -61.47 -0.34 -15.52 16 16 C 0.25 6.73 5.43 -5.20 -0.03 6.70 16 17 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 18 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.88 -26.20 13.29 55.43 0.74 -25.47 16 21 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.17 -1.97 10.73 -39.35 -0.42 -2.39 16 26 C 0.01 0.05 6.92 -82.21 -0.57 -0.52 16 27 C -0.08 -0.38 9.92 36.00 0.36 -0.02 16 28 H 0.06 0.29 6.56 -51.93 -0.34 -0.06 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.38 6.56 -51.93 -0.34 0.04 16 36 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.39 7.07 8.32 -40.82 -0.34 6.73 16 39 H 0.03 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.21 7.03 -51.93 -0.36 -0.15 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -36.22 388.15 -7.24 -43.46 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.76 Total: 1.39 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.92 Total: 9.12 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.63 Total: -46.71 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -1.02 Total: -29.05 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.22 -7.24 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778155685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.053 kcal (2) G-P(sol) polarization free energy of solvation -36.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds