Wall clock time and date at job start Tue Mar 31 2020 13:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09001 * 109.46922 * 305.00135 * 3 2 1 5 5 C 1.53006 * 109.47164 * 64.99887 * 3 2 1 6 6 N 1.46496 * 109.47194 * 184.99801 * 3 2 1 7 7 N 1.28469 * 124.88088 * 300.02661 * 6 3 2 8 8 C 1.31851 * 110.06260 * 179.97438 * 7 6 3 9 9 C 1.47584 * 126.52194 * 179.97438 * 8 7 6 10 10 O 1.21497 * 120.00033 * 180.02562 * 9 8 7 11 11 O 1.34730 * 120.00103 * 0.02719 * 9 8 7 12 12 C 1.45197 * 116.99673 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47027 * 179.97438 * 12 11 9 14 14 O 1.21283 * 119.99419 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00455 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00314 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47008 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00352 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99556 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99977 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99658 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47250 * 90.00004 * 21 19 17 23 23 H 1.48507 * 109.46906 * 209.99802 * 21 19 17 24 24 H 1.48502 * 109.47428 * 329.99667 * 21 19 17 25 25 C 1.41549 * 106.95616 * 0.02562 * 8 7 6 26 26 C 1.35047 * 124.87561 * 119.72141 * 6 3 2 27 27 C 1.50697 * 126.38268 * 0.02562 * 26 6 3 28 28 H 1.09000 * 109.46772 * 299.99985 * 1 2 3 29 29 H 1.08998 * 109.46554 * 60.00185 * 1 2 3 30 30 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46772 * 240.00015 * 2 1 3 32 32 H 1.08994 * 109.46772 * 120.00268 * 2 1 3 33 33 H 1.09001 * 109.47002 * 59.99738 * 5 3 2 34 34 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47050 * 300.00004 * 5 3 2 36 36 H 1.09002 * 109.47787 * 299.99699 * 12 11 9 37 37 H 1.09000 * 109.47349 * 60.00196 * 12 11 9 38 38 H 0.96996 * 120.00054 * 0.02562 * 15 13 12 39 39 H 1.09012 * 109.46613 * 300.00026 * 16 15 13 40 40 H 1.08997 * 109.47531 * 59.99430 * 16 15 13 41 41 H 0.97005 * 119.99823 * 180.02562 * 20 19 17 42 42 H 1.07992 * 127.25082 * 180.02562 * 25 8 7 43 43 H 1.08999 * 109.46995 * 90.00292 * 27 26 6 44 44 H 1.09003 * 109.47253 * 209.99651 * 27 26 6 45 45 H 1.08994 * 109.47219 * 330.00372 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 7 3.5001 1.4442 -0.1203 7 7 4.3066 0.8915 0.7130 8 6 5.5532 1.0697 0.3221 9 6 6.7667 0.5870 1.0094 10 8 7.8634 0.8206 0.5414 11 8 6.6585 -0.1126 2.1557 12 6 7.8940 -0.5560 2.7763 13 6 7.5775 -1.3158 4.0387 14 8 6.4241 -1.4689 4.3812 15 7 8.5759 -1.8252 4.7871 16 6 8.2682 -2.5643 6.0139 17 6 9.5505 -3.0234 6.6588 18 1 10.4997 -2.7885 6.2005 19 6 9.5117 -3.7433 7.8342 20 7 8.3558 -4.0289 8.3926 21 14 11.1012 -4.3130 8.6332 22 1 11.5816 -3.2720 9.5771 23 1 10.8578 -5.5775 9.3730 24 1 12.1278 -4.5424 7.5850 25 6 5.5060 1.8130 -0.8816 26 6 4.1913 2.0222 -1.1263 27 6 3.6078 2.7652 -2.3003 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0699 1.5875 2.1492 34 1 1.9982 3.1543 1.3072 35 1 0.5490 2.1253 1.3969 36 1 8.4345 -1.2049 2.0872 37 1 8.5101 0.3099 3.0188 38 1 9.4983 -1.7024 4.5134 39 1 7.7273 -1.9154 6.7029 40 1 7.6525 -3.4305 5.7716 41 1 8.3286 -4.5351 9.2196 42 1 6.3426 2.1398 -1.4813 43 1 3.5105 3.8216 -2.0497 44 1 4.2652 2.6556 -3.1629 45 1 2.6258 2.3562 -2.5376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778155685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:22 Heat of formation + Delta-G solvation = -81.111116 kcal Electronic energy + Delta-G solvation = -26474.304572 eV Core-core repulsion = 22492.559736 eV Total energy + Delta-G solvation = -3981.744836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.88610 -41.58591 -40.34276 -37.70556 -37.40590 -36.20700 -34.43666 -33.83971 -32.83951 -30.95826 -30.08723 -28.66955 -27.94279 -26.53417 -25.00109 -24.39081 -22.22947 -22.11267 -21.68364 -20.62446 -19.25676 -18.42812 -18.23653 -17.95612 -17.67672 -17.07677 -17.01400 -16.84711 -16.15259 -16.12149 -15.92676 -15.11404 -14.79044 -14.69733 -14.48110 -14.16265 -14.09461 -13.85711 -13.83995 -13.73521 -13.55666 -13.35177 -13.10907 -12.94947 -12.76958 -12.72373 -12.58629 -12.23743 -12.07272 -12.05722 -11.96808 -11.85769 -11.65558 -11.51255 -10.94806 -10.82947 -10.27327 -9.97203 -9.95717 -8.30459 -6.47356 0.15096 1.00886 1.03147 1.43353 1.45858 1.51956 1.53402 1.57854 1.98420 2.32768 2.53627 3.04563 3.17865 3.57177 3.63910 3.68066 3.71811 3.94276 3.95657 4.02125 4.02235 4.31195 4.36635 4.39406 4.49697 4.56045 4.69475 4.79867 4.83900 4.97178 5.01859 5.02733 5.08044 5.08066 5.10956 5.19574 5.22885 5.28779 5.38903 5.39982 5.61617 5.80347 5.84326 6.40491 6.61254 6.75342 6.88635 7.18814 7.33848 8.81835 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.002173 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.775040 B =12881.215484 C =14072.159666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.137 3.863 4 H 0.152 0.848 5 C -0.164 4.164 6 N -0.265 5.265 7 N -0.259 5.259 8 C -0.039 4.039 9 C 0.556 3.444 10 O -0.514 6.514 11 O -0.340 6.340 12 C 0.058 3.942 13 C 0.500 3.500 14 O -0.584 6.584 15 N -0.697 5.697 16 C 0.266 3.734 17 C -0.557 4.557 18 H 0.087 0.913 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.987 3.013 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.255 1.255 25 C -0.187 4.187 26 C 0.023 3.977 27 C -0.083 4.083 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.413 0.587 39 H -0.009 1.009 40 H -0.008 1.008 41 H 0.269 0.731 42 H 0.178 0.822 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.380 16.155 -25.653 33.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.039 3.961 4 H 0.170 0.830 5 C -0.221 4.221 6 N -0.056 5.056 7 N -0.097 5.097 8 C -0.194 4.194 9 C 0.400 3.600 10 O -0.401 6.401 11 O -0.254 6.254 12 C -0.018 4.018 13 C 0.286 3.714 14 O -0.464 6.464 15 N -0.349 5.349 16 C 0.144 3.856 17 C -0.594 4.594 18 H 0.105 0.895 19 C -0.197 4.197 20 N -0.569 5.569 21 Si 0.810 3.190 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.179 1.179 25 C -0.214 4.214 26 C -0.101 4.101 27 C -0.141 4.141 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.250 0.750 39 H 0.009 0.991 40 H 0.010 0.990 41 H 0.078 0.922 42 H 0.196 0.804 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.674 15.510 -24.497 32.496 hybrid contribution 1.686 -0.417 0.508 1.810 sum -12.988 15.093 -23.989 31.176 Atomic orbital electron populations 1.21779 0.91749 1.03125 1.03644 1.21864 0.98763 0.94082 1.02458 1.22204 0.71513 0.99524 1.02859 0.83010 1.22211 1.04317 1.00446 0.95144 1.46285 1.08398 1.35871 1.15061 1.73710 1.00679 1.16940 1.18337 1.20734 0.89525 1.09566 0.99624 1.19941 0.87805 0.74349 0.77894 1.90816 1.27506 1.55892 1.65921 1.86696 1.36203 1.65431 1.37111 1.22844 0.84883 1.01410 0.92700 1.20648 0.85518 0.79883 0.85394 1.90695 1.22214 1.60541 1.72959 1.46016 1.09454 1.54333 1.25057 1.18641 0.96591 0.89551 0.80805 1.21607 0.92776 1.36210 1.08844 0.89486 1.26093 1.00793 0.95429 0.97367 1.70143 1.27347 1.39516 1.19903 0.85117 0.77881 0.77506 0.78461 1.19575 1.20967 1.17864 1.21733 0.97757 1.04772 0.97146 1.22167 0.91000 1.01852 0.95047 1.20604 1.02315 0.99555 0.91612 0.91336 0.89967 0.92092 0.91549 0.93242 0.93763 0.91579 0.87093 0.85407 0.85405 0.75008 0.99066 0.99046 0.92188 0.80448 0.88427 0.87964 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 71.99 0.70 -0.47 16 2 C -0.13 -1.88 5.57 30.60 0.17 -1.71 16 3 C 0.14 1.71 3.02 44.99 0.14 1.84 16 4 H 0.15 0.59 6.55 -2.39 -0.02 0.58 16 5 C -0.16 -2.16 9.12 71.98 0.66 -1.50 16 6 N -0.26 -5.35 3.04 -314.20 -0.96 -6.30 16 7 N -0.26 -7.74 11.65 -48.22 -0.56 -8.30 16 8 C -0.04 -1.18 7.17 42.43 0.30 -0.88 16 9 C 0.56 18.89 7.97 70.29 0.56 19.45 16 10 O -0.51 -17.42 16.72 19.85 0.33 -17.09 16 11 O -0.34 -12.91 9.77 -50.02 -0.49 -13.40 16 12 C 0.06 1.93 5.95 71.24 0.42 2.35 16 13 C 0.50 21.84 7.91 87.66 0.69 22.53 16 14 O -0.58 -31.86 16.50 15.76 0.26 -31.60 16 15 N -0.70 -30.46 5.55 -466.78 -2.59 -33.05 16 16 C 0.27 14.93 5.43 85.63 0.46 15.39 16 17 C -0.56 -30.55 9.28 25.60 0.24 -30.31 16 18 H 0.09 4.28 7.60 -2.91 -0.02 4.26 16 19 C 0.00 0.16 5.46 84.66 0.46 0.62 16 20 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 21 Si 0.99 42.70 29.54 68.60 2.03 44.73 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 25 C -0.19 -4.11 10.73 22.42 0.24 -3.87 16 26 C 0.02 0.38 6.92 41.40 0.29 0.66 16 27 C -0.08 -0.41 9.92 71.23 0.71 0.30 16 28 H 0.07 0.49 6.56 -2.39 -0.02 0.48 16 29 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.11 0.80 6.56 -2.39 -0.02 0.79 16 36 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 38 H 0.41 14.53 8.32 -92.71 -0.77 13.76 16 39 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 40 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 41 H 0.27 15.30 8.31 -92.70 -0.77 14.52 16 42 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 43 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.10 0.28 8.14 -2.39 -0.02 0.27 16 45 H 0.09 0.08 7.03 -2.39 -0.02 0.06 16 Total: -1.00 -84.81 388.15 4.58 -80.23 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.24 Total: 16.79 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 6.04 Total: 24.42 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -3.82 Total: -104.09 kcal Atomic # 8 Polarization: -62.19 SS G_CDS: 0.10 Total: -62.09 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -84.81 4.58 -80.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778155685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.880 kcal (2) G-P(sol) polarization free energy of solvation -84.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds