Wall clock time and date at job start Tue Mar 31 2020 14:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47140 * 2 1 4 4 C 1.46503 * 120.00224 * 269.99824 * 3 2 1 5 5 C 1.50698 * 109.47270 * 270.00415 * 4 3 2 6 6 H 1.07999 * 120.00311 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00266 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00384 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99629 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46987 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47018 * 209.99848 * 9 7 5 12 12 H 1.48493 * 109.47228 * 330.00341 * 9 7 5 13 13 C 1.34772 * 120.00017 * 90.00547 * 3 2 1 14 14 O 1.21283 * 120.00181 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99880 * 359.97438 * 13 3 2 16 16 O 1.45205 * 109.46762 * 180.02562 * 15 13 3 17 17 C 1.34230 * 116.99274 * 180.02562 * 16 15 13 18 18 O 1.20822 * 120.00868 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99652 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.47387 * 180.02562 * 19 17 16 21 21 C 1.39868 * 126.03767 * 90.02432 * 20 19 17 22 22 N 1.30844 * 108.19764 * 179.97438 * 21 20 19 23 23 N 1.40078 * 108.20890 * 0.02562 * 22 21 20 24 24 C 1.46495 * 126.04021 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47183 * 304.97729 * 24 23 22 26 26 C 1.34957 * 107.92650 * 0.02562 * 23 22 21 27 27 H 1.09005 * 109.47080 * 59.99742 * 1 2 3 28 28 H 1.08997 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47158 * 300.00411 * 1 2 3 30 30 H 1.09002 * 109.46876 * 240.00296 * 2 1 3 31 31 H 1.08991 * 109.47117 * 120.00137 * 2 1 3 32 32 H 1.09003 * 109.46813 * 30.00375 * 4 3 2 33 33 H 1.08995 * 109.47334 * 149.99849 * 4 3 2 34 34 H 0.96999 * 120.00277 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.46592 * 60.00632 * 15 13 3 36 36 H 1.08991 * 109.47190 * 300.00505 * 15 13 3 37 37 H 1.09002 * 109.47045 * 60.00422 * 19 17 16 38 38 H 1.09005 * 109.47085 * 300.00449 * 19 17 16 39 39 H 1.07995 * 125.89923 * 0.21784 * 21 20 19 40 40 H 1.09001 * 109.47177 * 64.97492 * 24 23 22 41 41 H 1.08999 * 109.47527 * 184.97205 * 24 23 22 42 42 H 1.09001 * 109.46871 * 299.99950 * 25 24 23 43 43 H 1.08999 * 109.47317 * 59.99347 * 25 24 23 44 44 H 1.09001 * 109.47142 * 179.97438 * 25 24 23 45 45 H 1.07995 * 126.12756 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2301 -1.0963 7 6 4.1492 2.3896 -2.8780 8 7 5.3913 2.1833 -3.2574 9 14 3.0124 3.4341 -3.9299 10 1 3.1149 4.8546 -3.5092 11 1 3.4059 3.3108 -5.3565 12 1 1.6130 2.9672 -3.7602 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9914 1.3062 2.4723 16 8 2.3056 2.1960 3.5759 17 6 2.1347 1.7121 4.8163 18 8 1.7362 0.5826 4.9746 19 6 2.4408 2.5776 6.0114 20 6 2.1679 1.8035 7.2753 21 6 3.0855 1.0045 7.9653 22 7 2.4821 0.4986 9.0102 23 7 1.1594 0.9599 9.0179 24 6 0.1383 0.6328 10.0161 25 6 -0.0007 -0.8870 10.1243 26 6 0.9916 1.7580 7.9426 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5817 1.6878 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 5.7172 2.5732 -4.0836 35 1 2.6214 0.4186 2.5301 36 1 0.9435 1.0124 2.5299 37 1 1.8114 3.4671 5.9867 38 1 3.4896 2.8738 5.9864 39 1 4.1153 0.8375 7.6861 40 1 0.4320 1.0406 10.9834 41 1 -0.8161 1.0645 9.7146 42 1 -0.2944 -1.2947 9.1571 43 1 0.9536 -1.3186 10.4259 44 1 -0.7602 -1.1304 10.8674 45 1 0.0820 2.2699 7.6654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781414174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:47 Heat of formation + Delta-G solvation = -37.951584 kcal Electronic energy + Delta-G solvation = -26689.570040 eV Core-core repulsion = 22709.696742 eV Total energy + Delta-G solvation = -3979.873298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55470 -40.36499 -39.00617 -36.38660 -35.39605 -34.94926 -32.77019 -32.38612 -30.51393 -30.44160 -29.37596 -27.64140 -26.57463 -24.14451 -23.04863 -22.52187 -21.50395 -21.00420 -20.07888 -18.65064 -17.76210 -17.31634 -17.01346 -16.61817 -16.46417 -16.01195 -15.66968 -15.18933 -14.83637 -14.57071 -14.32184 -14.04432 -13.60901 -13.57899 -13.54667 -13.29004 -12.83697 -12.74748 -12.51317 -12.43616 -12.35801 -12.23910 -11.98180 -11.82516 -11.80639 -11.45990 -11.02162 -10.87613 -10.78632 -10.55492 -10.52520 -10.47933 -10.17536 -9.65709 -9.56049 -9.09969 -8.68799 -8.59966 -7.81616 -6.09483 -4.08757 1.60893 2.18557 2.25288 2.31220 2.85746 3.18694 3.28777 3.34585 3.36519 3.84369 4.08009 4.38578 4.47965 4.54268 4.66029 4.72795 4.78204 4.82240 4.94128 5.02673 5.16418 5.19580 5.23140 5.23829 5.28494 5.34364 5.43414 5.50030 5.53056 5.66035 5.71150 5.81290 5.93485 6.10154 6.34444 6.35784 6.46999 6.66621 6.73143 6.90013 7.25598 7.45005 7.58378 7.80263 8.12483 8.44480 8.83258 8.94352 9.50017 11.03762 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.002212 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.687690 B =12654.867170 C =13112.098701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.896 5.896 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.518 6.518 15 C 0.052 3.948 16 O -0.331 6.331 17 C 0.458 3.542 18 O -0.506 6.506 19 C -0.030 4.030 20 C -0.231 4.231 21 C 0.066 3.934 22 N -0.295 5.295 23 N -0.372 5.372 24 C 0.131 3.869 25 C -0.166 4.166 26 C 0.074 3.926 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.183 0.817 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.509 -3.618 23.957 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.322 5.322 4 C 0.098 3.902 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.393 6.393 15 C -0.026 4.026 16 O -0.247 6.247 17 C 0.300 3.700 18 O -0.394 6.394 19 C -0.068 4.068 20 C -0.243 4.243 21 C -0.120 4.120 22 N -0.116 5.116 23 N -0.154 5.154 24 C 0.010 3.990 25 C -0.224 4.224 26 C -0.073 4.073 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.200 0.800 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -13.286 -4.096 24.964 28.574 hybrid contribution -0.622 0.739 -1.520 1.801 sum -13.908 -3.356 23.444 27.465 Atomic orbital electron populations 1.22243 0.96542 1.01841 1.02284 1.21532 0.93611 0.83608 1.03486 1.47873 1.64274 1.13529 1.06503 1.19695 0.97508 0.93430 0.79566 1.21315 0.95278 1.33081 1.07226 0.90680 1.24858 0.95023 0.95789 0.97351 1.69891 1.15104 1.44895 1.23527 0.86847 0.81412 0.81632 0.79769 1.19852 1.21062 1.19073 1.19758 0.79361 0.87119 0.84350 1.90713 1.44240 1.17615 1.86770 1.22872 1.02588 0.92729 0.84373 1.86571 1.78744 1.44898 1.14451 1.23938 0.74381 0.87258 0.84429 1.90657 1.42096 1.20003 1.86611 1.19491 1.05570 0.96544 0.85241 1.19412 0.94522 1.09595 1.00729 1.23777 1.00291 0.95403 0.92572 1.77320 0.89377 1.22369 1.22497 1.48632 1.09352 1.36776 1.20673 1.21684 0.88542 0.97909 0.90842 1.22059 1.03407 0.94006 1.02932 1.22293 0.99603 0.96171 0.89231 0.91993 0.91725 0.93050 0.89209 0.91377 0.94931 0.94419 0.92523 0.88604 0.88883 0.87028 0.86578 0.79996 0.89790 0.88680 0.91913 0.91048 0.90715 0.81003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.16 0.38 -1.74 16 2 C 0.10 1.55 5.93 -4.04 -0.02 1.53 16 3 N -0.59 -11.94 2.46 -175.06 -0.43 -12.37 16 4 C 0.22 5.26 4.23 -5.19 -0.02 5.23 16 5 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 9 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 13 C 0.51 10.50 7.75 -10.99 -0.09 10.42 16 14 O -0.52 -12.96 16.08 -14.11 -0.23 -13.18 16 15 C 0.05 0.83 4.50 36.01 0.16 0.99 16 16 O -0.33 -5.31 9.76 -45.90 -0.45 -5.75 16 17 C 0.46 6.14 7.95 36.01 0.29 6.42 16 18 O -0.51 -7.88 15.78 -18.75 -0.30 -8.17 16 19 C -0.03 -0.28 6.30 -29.03 -0.18 -0.46 16 20 C -0.23 -2.33 4.59 -105.05 -0.48 -2.81 16 21 C 0.07 0.71 11.96 -17.36 -0.21 0.51 16 22 N -0.29 -3.44 12.42 30.62 0.38 -3.06 16 23 N -0.37 -3.50 3.68 -61.37 -0.23 -3.73 16 24 C 0.13 0.75 7.23 -4.04 -0.03 0.72 16 25 C -0.17 -0.98 10.10 37.16 0.38 -0.60 16 26 C 0.07 0.66 11.36 -17.22 -0.20 0.46 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.61 7.22 -51.93 -0.37 0.23 16 30 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.07 0.90 6.44 -51.93 -0.33 0.56 16 32 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 33 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.10 1.43 7.39 -51.93 -0.38 1.04 16 36 H 0.09 1.27 7.18 -51.93 -0.37 0.90 16 37 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.30 8.07 -51.93 -0.42 -0.12 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -38.15 385.87 -6.64 -44.79 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.85 Total: -1.50 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -0.46 Total: 7.20 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.50 Total: -45.90 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.97 Total: -27.11 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.15 -6.64 -44.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781414174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.836 kcal (2) G-P(sol) polarization free energy of solvation -38.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds