Wall clock time and date at job start Tue Mar 31 2020 14:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47140 * 2 1 4 4 C 1.46503 * 120.00224 * 269.99824 * 3 2 1 5 5 C 1.50698 * 109.47270 * 270.00415 * 4 3 2 6 6 H 1.07999 * 120.00311 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00266 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00384 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99629 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46987 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47018 * 209.99848 * 9 7 5 12 12 H 1.48493 * 109.47228 * 330.00341 * 9 7 5 13 13 C 1.34772 * 120.00017 * 90.00547 * 3 2 1 14 14 O 1.21283 * 120.00181 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99880 * 359.97438 * 13 3 2 16 16 O 1.45205 * 109.46762 * 180.02562 * 15 13 3 17 17 C 1.34230 * 116.99274 * 180.02562 * 16 15 13 18 18 O 1.20822 * 120.00868 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99652 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.47387 * 180.02562 * 19 17 16 21 21 C 1.39868 * 126.03767 * 90.02432 * 20 19 17 22 22 N 1.30844 * 108.19764 * 179.97438 * 21 20 19 23 23 N 1.40078 * 108.20890 * 0.02562 * 22 21 20 24 24 C 1.46495 * 126.04021 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47183 * 304.97729 * 24 23 22 26 26 C 1.34957 * 107.92650 * 0.02562 * 23 22 21 27 27 H 1.09005 * 109.47080 * 59.99742 * 1 2 3 28 28 H 1.08997 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47158 * 300.00411 * 1 2 3 30 30 H 1.09002 * 109.46876 * 240.00296 * 2 1 3 31 31 H 1.08991 * 109.47117 * 120.00137 * 2 1 3 32 32 H 1.09003 * 109.46813 * 30.00375 * 4 3 2 33 33 H 1.08995 * 109.47334 * 149.99849 * 4 3 2 34 34 H 0.96999 * 120.00277 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.46592 * 60.00632 * 15 13 3 36 36 H 1.08991 * 109.47190 * 300.00505 * 15 13 3 37 37 H 1.09002 * 109.47045 * 60.00422 * 19 17 16 38 38 H 1.09005 * 109.47085 * 300.00449 * 19 17 16 39 39 H 1.07995 * 125.89923 * 0.21784 * 21 20 19 40 40 H 1.09001 * 109.47177 * 64.97492 * 24 23 22 41 41 H 1.08999 * 109.47527 * 184.97205 * 24 23 22 42 42 H 1.09001 * 109.46871 * 299.99950 * 25 24 23 43 43 H 1.08999 * 109.47317 * 59.99347 * 25 24 23 44 44 H 1.09001 * 109.47142 * 179.97438 * 25 24 23 45 45 H 1.07995 * 126.12756 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2301 -1.0963 7 6 4.1492 2.3896 -2.8780 8 7 5.3913 2.1833 -3.2574 9 14 3.0124 3.4341 -3.9299 10 1 3.1149 4.8546 -3.5092 11 1 3.4059 3.3108 -5.3565 12 1 1.6130 2.9672 -3.7602 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9914 1.3062 2.4723 16 8 2.3056 2.1960 3.5759 17 6 2.1347 1.7121 4.8163 18 8 1.7362 0.5826 4.9746 19 6 2.4408 2.5776 6.0114 20 6 2.1679 1.8035 7.2753 21 6 3.0855 1.0045 7.9653 22 7 2.4821 0.4986 9.0102 23 7 1.1594 0.9599 9.0179 24 6 0.1383 0.6328 10.0161 25 6 -0.0007 -0.8870 10.1243 26 6 0.9916 1.7580 7.9426 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5817 1.6878 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 5.7172 2.5732 -4.0836 35 1 2.6214 0.4186 2.5301 36 1 0.9435 1.0124 2.5299 37 1 1.8114 3.4671 5.9867 38 1 3.4896 2.8738 5.9864 39 1 4.1153 0.8375 7.6861 40 1 0.4320 1.0406 10.9834 41 1 -0.8161 1.0645 9.7146 42 1 -0.2944 -1.2947 9.1571 43 1 0.9536 -1.3186 10.4259 44 1 -0.7602 -1.1304 10.8674 45 1 0.0820 2.2699 7.6654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781414174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:46 Heat of formation + Delta-G solvation = -62.772837 kcal Electronic energy + Delta-G solvation = -26690.646370 eV Core-core repulsion = 22709.696742 eV Total energy + Delta-G solvation = -3980.949628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.28611 -41.53020 -40.51446 -37.58657 -36.98192 -35.53191 -34.87320 -33.16167 -32.03844 -31.13959 -30.71934 -28.98727 -27.73665 -24.74644 -24.49869 -24.12087 -22.57328 -21.65408 -20.88016 -20.18380 -19.12165 -18.88415 -18.14985 -17.87411 -17.60147 -17.40195 -16.69487 -16.35862 -16.24310 -15.75032 -15.26174 -15.05310 -14.79419 -14.74124 -14.58607 -14.32911 -14.20635 -13.89209 -13.70847 -13.67764 -13.38780 -13.20809 -13.12978 -12.98486 -12.72401 -12.56186 -12.41405 -12.29137 -12.10881 -12.00655 -11.74490 -11.72580 -11.58565 -11.47702 -10.82430 -10.76583 -10.36302 -9.51717 -9.39602 -8.32888 -6.38599 0.90953 1.22646 1.27498 1.35189 1.38923 1.47072 1.59840 1.66974 1.89666 2.32221 2.49264 3.01182 3.43011 3.54553 3.77858 3.95191 3.98332 3.99973 4.09287 4.14123 4.16345 4.24568 4.35229 4.36674 4.45000 4.58527 4.70010 4.74233 4.77504 4.82140 4.87457 4.95896 4.96446 4.99193 5.12187 5.21963 5.35507 5.37700 5.45696 5.57964 5.69092 6.15433 6.22518 6.53085 6.62995 6.73486 6.76453 7.17034 7.30135 8.83919 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.002212 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.687690 B =12654.867170 C =13112.098701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.593 5.593 4 C 0.226 3.774 5 C -0.538 4.538 6 H 0.028 0.972 7 C 0.010 3.990 8 N -0.945 5.945 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.236 1.236 13 C 0.501 3.499 14 O -0.573 6.573 15 C 0.063 3.937 16 O -0.350 6.350 17 C 0.461 3.539 18 O -0.529 6.529 19 C -0.022 4.022 20 C -0.250 4.250 21 C 0.050 3.950 22 N -0.331 5.331 23 N -0.375 5.375 24 C 0.122 3.878 25 C -0.161 4.161 26 C 0.078 3.922 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.268 0.732 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.139 0.861 38 H 0.130 0.870 39 H 0.191 0.809 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.100 0.900 45 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.757 -3.445 24.753 30.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.104 3.896 5 C -0.577 4.577 6 H 0.047 0.953 7 C -0.189 4.189 8 N -0.584 5.584 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.159 1.159 13 C 0.289 3.711 14 O -0.452 6.452 15 C -0.014 4.014 16 O -0.266 6.266 17 C 0.305 3.695 18 O -0.418 6.418 19 C -0.060 4.060 20 C -0.261 4.261 21 C -0.135 4.135 22 N -0.153 5.153 23 N -0.157 5.157 24 C 0.002 3.998 25 C -0.219 4.219 26 C -0.070 4.070 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.140 0.860 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.208 0.792 40 H 0.113 0.887 41 H 0.145 0.855 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.119 0.881 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -16.564 -3.987 25.795 30.914 hybrid contribution 0.437 0.594 -1.652 1.809 sum -16.127 -3.393 24.143 29.232 Atomic orbital electron populations 1.22173 0.93627 1.03860 1.02319 1.21870 0.95933 0.80846 1.04258 1.47972 1.63946 1.15274 1.05369 1.19375 0.95024 0.93210 0.81949 1.21546 0.97051 1.32259 1.06805 0.95318 1.25877 0.96782 0.97205 0.98990 1.70049 1.17442 1.46503 1.24450 0.85701 0.80496 0.79002 0.77667 1.20110 1.20110 1.15861 1.20569 0.78016 0.86682 0.85868 1.90674 1.46724 1.20111 1.87733 1.22725 1.04479 0.91972 0.82252 1.86590 1.79247 1.45450 1.15336 1.24723 0.73273 0.87401 0.84122 1.90644 1.43370 1.21159 1.86624 1.19617 1.06980 0.96450 0.82943 1.19568 0.94999 1.10355 1.01205 1.24088 1.01112 0.95601 0.92747 1.77254 0.90948 1.23662 1.23392 1.48978 1.09074 1.36321 1.21304 1.22052 0.89053 0.97820 0.90856 1.22019 1.02945 0.94204 1.02759 1.22868 1.00347 0.95322 0.88458 0.92779 0.88667 0.92203 0.90101 0.89094 0.92677 0.95976 0.92256 0.87504 0.85953 0.84315 0.85227 0.79181 0.88745 0.85510 0.93416 0.93289 0.88110 0.77725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 10.24 71.98 0.74 -2.76 16 2 C 0.09 2.68 5.93 86.38 0.51 3.19 16 3 N -0.59 -23.82 2.46 -826.17 -2.03 -25.85 16 4 C 0.23 10.87 4.23 85.63 0.36 11.23 16 5 C -0.54 -31.56 9.94 25.60 0.25 -31.31 16 6 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 7 C 0.01 0.56 5.47 84.66 0.46 1.02 16 8 N -0.94 -59.72 13.96 21.45 0.30 -59.42 16 9 Si 0.95 44.03 27.47 68.60 1.88 45.91 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 13 C 0.50 20.64 7.75 87.66 0.68 21.32 16 14 O -0.57 -29.30 16.08 15.76 0.25 -29.04 16 15 C 0.06 1.91 4.50 71.24 0.32 2.23 16 16 O -0.35 -10.83 9.76 -45.07 -0.44 -11.27 16 17 C 0.46 11.62 7.95 71.24 0.57 12.19 16 18 O -0.53 -15.63 15.78 21.98 0.35 -15.29 16 19 C -0.02 -0.36 6.30 29.10 0.18 -0.18 16 20 C -0.25 -4.65 4.59 -20.14 -0.09 -4.74 16 21 C 0.05 1.07 11.96 85.23 1.02 2.09 16 22 N -0.33 -7.65 12.42 -57.02 -0.71 -8.36 16 23 N -0.37 -6.47 3.68 -348.07 -1.28 -7.75 16 24 C 0.12 1.12 7.23 86.38 0.62 1.75 16 25 C -0.16 -1.70 10.10 71.98 0.73 -0.98 16 26 C 0.08 1.20 11.36 83.54 0.95 2.15 16 27 H 0.05 1.26 8.14 -2.38 -0.02 1.25 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.20 7.22 -2.39 -0.02 1.19 16 30 H 0.08 2.48 8.07 -2.39 -0.02 2.46 16 31 H 0.09 2.20 6.44 -2.39 -0.02 2.18 16 32 H 0.06 2.40 7.13 -2.39 -0.02 2.38 16 33 H 0.02 1.14 6.85 -2.39 -0.02 1.12 16 34 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.11 3.03 7.39 -2.39 -0.02 3.01 16 36 H 0.12 3.01 7.18 -2.39 -0.02 2.99 16 37 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.19 3.32 8.06 -2.91 -0.02 3.30 16 40 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.13 0.36 8.07 -2.39 -0.02 0.34 16 42 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -87.26 385.87 6.56 -80.70 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.93 Total: 13.17 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 7.31 Total: 17.21 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -3.72 Total: -101.39 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: 0.16 Total: -55.60 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Total: -87.26 6.56 -80.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781414174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.924 kcal (2) G-P(sol) polarization free energy of solvation -87.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds