Wall clock time and date at job start Tue Mar 31 2020 14:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47387 * 2 1 4 4 C 1.34949 * 126.04371 * 125.00090 * 3 2 1 5 5 C 1.35308 * 107.75011 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.04105 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47249 * 90.00048 * 6 5 4 8 8 O 1.20827 * 120.00096 * 0.02562 * 7 6 5 9 9 O 1.34235 * 120.00475 * 180.02562 * 7 6 5 10 10 C 1.45199 * 117.00347 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46630 * 30.00150 * 10 9 7 12 12 C 1.52995 * 109.47098 * 269.99533 * 10 9 7 13 13 C 1.50705 * 109.46964 * 149.99508 * 10 9 7 14 14 O 1.21277 * 120.00056 * 8.56805 * 13 10 9 15 15 N 1.34777 * 119.99727 * 188.56661 * 13 10 9 16 16 C 1.46498 * 120.00086 * 4.58867 * 15 13 10 17 17 C 1.46497 * 119.99787 * 184.58538 * 15 13 10 18 18 C 1.50707 * 109.47038 * 89.99915 * 17 15 13 19 19 H 1.07997 * 119.99940 * 0.02562 * 18 17 15 20 20 C 1.37871 * 119.99953 * 179.97438 * 18 17 15 21 21 N 1.31521 * 119.99977 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00157 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46697 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46916 * 119.99744 * 22 20 18 25 25 H 1.48499 * 109.47331 * 240.00005 * 22 20 18 26 26 C 1.39874 * 107.92202 * 359.97438 * 5 4 3 27 27 N 1.30840 * 108.20035 * 0.02562 * 26 5 4 28 28 H 1.08996 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46963 * 300.00496 * 1 2 3 30 30 H 1.09001 * 109.46895 * 59.99842 * 1 2 3 31 31 H 1.09007 * 109.47158 * 240.00141 * 2 1 3 32 32 H 1.08997 * 109.47689 * 119.99758 * 2 1 3 33 33 H 1.08004 * 126.12051 * 359.75964 * 4 3 2 34 34 H 1.09001 * 109.47342 * 210.00244 * 6 5 4 35 35 H 1.08994 * 109.47205 * 329.99998 * 6 5 4 36 36 H 1.09002 * 109.47234 * 307.15432 * 12 10 9 37 37 H 1.09000 * 109.46815 * 67.15254 * 12 10 9 38 38 H 1.08991 * 109.47008 * 187.14981 * 12 10 9 39 39 H 1.08995 * 109.47357 * 86.11551 * 16 15 13 40 40 H 1.09001 * 109.46773 * 206.12052 * 16 15 13 41 41 H 1.08998 * 109.47159 * 326.11538 * 16 15 13 42 42 H 1.09000 * 109.47216 * 209.99644 * 17 15 13 43 43 H 1.09003 * 109.47344 * 330.00226 * 17 15 13 44 44 H 0.97002 * 119.99411 * 180.02562 * 21 20 18 45 45 H 1.08001 * 125.90365 * 180.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9212 0.8938 5 6 3.0713 3.2137 0.5462 6 6 3.9540 4.2002 1.2664 7 6 5.3459 4.1417 0.6917 8 8 5.5954 3.3777 -0.2105 9 8 6.3086 4.9383 1.1820 10 6 7.6256 4.8278 0.5806 11 1 7.5243 4.5353 -0.4645 12 6 8.4411 3.7718 1.3293 13 6 8.3290 6.1580 0.6640 14 8 7.8443 7.0607 1.3128 15 7 9.4968 6.3443 0.0174 16 6 10.0320 5.2895 -0.8470 17 6 10.2310 7.6017 0.1790 18 6 11.1833 7.4816 1.3409 19 1 11.2366 6.5607 1.9025 20 6 11.9872 8.5472 1.6863 21 7 11.9226 9.6685 1.0021 22 14 13.1681 8.3981 3.1260 23 1 13.0497 7.0445 3.7251 24 1 14.5588 8.6081 2.6493 25 1 12.8349 9.4230 4.1477 26 6 2.3121 3.4726 -0.5996 27 7 1.6803 2.3748 -0.9279 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3160 1.4137 1.7381 34 1 3.5518 5.2057 1.1426 35 1 3.9880 3.9506 2.3268 36 1 8.4354 3.9971 2.3958 37 1 8.0015 2.7883 1.1633 38 1 9.4673 3.7777 0.9622 39 1 9.6043 5.3856 -1.8449 40 1 11.1163 5.3833 -0.9058 41 1 9.7735 4.3148 -0.4333 42 1 10.7927 7.8140 -0.7307 43 1 9.5268 8.4119 0.3686 44 1 12.4885 10.4180 1.2449 45 1 2.2568 4.4156 -1.1231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781419088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:53 Heat of formation + Delta-G solvation = -35.178230 kcal Electronic energy + Delta-G solvation = -26914.110223 eV Core-core repulsion = 22934.357187 eV Total energy + Delta-G solvation = -3979.753036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54502 -40.46123 -38.87065 -36.35371 -34.95604 -34.87770 -32.91056 -32.40350 -31.40170 -30.46941 -27.77037 -27.41239 -26.11484 -24.43708 -24.06740 -22.75979 -21.28270 -20.98272 -20.02876 -18.80588 -17.79376 -17.30654 -16.58887 -16.45196 -16.08930 -15.87532 -15.60877 -14.97151 -14.71880 -14.60060 -14.38309 -14.26456 -13.85664 -13.46921 -13.28361 -13.02028 -12.79756 -12.67732 -12.52121 -12.40100 -12.21285 -12.06699 -12.00508 -11.79532 -11.55897 -11.30110 -11.20192 -10.86921 -10.78025 -10.66251 -10.54647 -10.41972 -10.17295 -9.64637 -9.63259 -8.88786 -8.66672 -8.45658 -7.69993 -6.06257 -4.11412 1.62871 2.19325 2.28867 2.35167 2.92179 3.27301 3.28857 3.36790 3.40924 3.97275 4.08570 4.42633 4.47572 4.53777 4.66716 4.72764 4.80353 4.85169 4.96154 5.03671 5.10564 5.16759 5.21508 5.26053 5.28468 5.43603 5.49824 5.52268 5.67702 5.71287 5.79423 5.82748 5.88778 6.08833 6.29485 6.38673 6.56106 6.74348 7.00767 7.41159 7.46081 7.48481 7.85436 7.90665 8.19948 8.31694 8.85355 9.00713 9.53720 11.01850 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.034049 B = 0.002135 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.139010 B =13108.966205 C =13145.177463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 N -0.372 5.372 4 C 0.074 3.926 5 C -0.230 4.230 6 C -0.030 4.030 7 C 0.457 3.543 8 O -0.506 6.506 9 O -0.327 6.327 10 C 0.072 3.928 11 H 0.102 0.898 12 C -0.169 4.169 13 C 0.509 3.491 14 O -0.521 6.521 15 N -0.596 5.596 16 C 0.068 3.932 17 C 0.245 3.755 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.893 5.893 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.282 1.282 26 C 0.066 3.934 27 N -0.295 5.295 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.173 0.827 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.035 0.965 43 H 0.046 0.954 44 H 0.263 0.737 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.812 -19.920 -1.230 27.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.154 5.154 4 C -0.073 4.073 5 C -0.242 4.242 6 C -0.069 4.069 7 C 0.299 3.701 8 O -0.394 6.394 9 O -0.243 6.243 10 C 0.013 3.987 11 H 0.119 0.881 12 C -0.227 4.227 13 C 0.294 3.706 14 O -0.397 6.397 15 N -0.330 5.330 16 C -0.076 4.076 17 C 0.126 3.874 18 C -0.567 4.567 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.532 5.532 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.208 1.208 26 C -0.121 4.121 27 N -0.116 5.116 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.190 0.810 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -19.741 -20.179 -2.007 28.301 hybrid contribution 1.544 0.215 1.189 1.961 sum -18.196 -19.965 -0.818 27.025 Atomic orbital electron populations 1.22054 0.93741 1.02845 1.03636 1.21689 0.96066 0.77467 1.03842 1.48623 1.35583 1.10162 1.21067 1.22281 0.94708 0.94140 0.96175 1.19411 1.07832 0.94922 1.02007 1.19491 0.86365 1.00722 1.00329 1.23929 0.87822 0.77434 0.80868 1.90639 1.82570 1.37486 1.28696 1.86638 1.19226 1.59261 1.59151 1.22581 0.80595 0.96170 0.99363 0.88053 1.22283 1.00835 0.97401 1.02142 1.19800 0.81905 0.88036 0.80897 1.90692 1.65122 1.43262 1.40582 1.48058 1.20836 1.19050 1.45074 1.21967 1.01121 0.90885 0.93630 1.19366 0.91172 0.79747 0.97068 1.21467 1.20878 0.99622 1.14717 0.92297 1.24947 0.97319 0.95030 0.96851 1.69948 1.39766 1.03388 1.40122 0.86427 0.80382 0.78200 0.82315 1.19787 1.20969 1.20836 1.23775 0.95263 0.97584 0.95436 1.77320 1.24192 0.96705 1.13356 0.90719 0.92068 0.91040 0.89742 0.88661 0.81020 0.86639 0.87103 0.90697 0.91405 0.89114 0.93466 0.90184 0.91696 0.94667 0.93565 0.92718 0.80029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 10.10 37.16 0.38 -0.47 16 2 C 0.13 0.75 7.23 -4.04 -0.03 0.72 16 3 N -0.37 -3.54 3.68 -61.37 -0.23 -3.77 16 4 C 0.07 0.67 11.36 -17.23 -0.20 0.47 16 5 C -0.23 -2.37 4.59 -105.06 -0.48 -2.85 16 6 C -0.03 -0.29 6.30 -29.04 -0.18 -0.48 16 7 C 0.46 6.32 7.92 36.00 0.29 6.60 16 8 O -0.51 -8.05 15.25 -18.75 -0.29 -8.33 16 9 O -0.33 -5.40 9.43 -45.87 -0.43 -5.84 16 10 C 0.07 1.21 2.16 -27.88 -0.06 1.15 16 11 H 0.10 1.60 6.73 -51.93 -0.35 1.25 16 12 C -0.17 -2.40 9.14 37.15 0.34 -2.06 16 13 C 0.51 11.01 7.03 -10.98 -0.08 10.93 16 14 O -0.52 -13.55 16.08 -13.94 -0.22 -13.77 16 15 N -0.60 -12.78 2.86 -182.95 -0.52 -13.31 16 16 C 0.07 1.08 9.80 59.85 0.59 1.67 16 17 C 0.25 6.42 5.18 -5.19 -0.03 6.39 16 18 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 22 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.07 0.72 11.96 -17.36 -0.21 0.52 16 27 N -0.30 -3.48 12.42 30.63 0.38 -3.10 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.30 8.07 -51.93 -0.42 -0.12 16 33 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.23 5.46 -51.93 -0.28 0.94 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 41 H 0.06 0.87 4.31 -51.93 -0.22 0.64 16 42 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 43 H 0.05 1.37 7.36 -51.93 -0.38 0.98 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 45 H 0.18 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -37.34 385.04 -6.58 -43.92 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.69 Total: -1.62 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -0.10 Total: 9.05 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.37 Total: -45.87 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.94 Total: -27.94 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.34 -6.58 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781419088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.739 kcal (2) G-P(sol) polarization free energy of solvation -37.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds