Wall clock time and date at job start Tue Mar 31 2020 14:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47387 * 2 1 4 4 C 1.34949 * 126.04371 * 125.00090 * 3 2 1 5 5 C 1.35308 * 107.75011 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.04105 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47249 * 90.00048 * 6 5 4 8 8 O 1.20827 * 120.00096 * 0.02562 * 7 6 5 9 9 O 1.34235 * 120.00475 * 180.02562 * 7 6 5 10 10 C 1.45199 * 117.00347 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46630 * 30.00150 * 10 9 7 12 12 C 1.52995 * 109.47098 * 269.99533 * 10 9 7 13 13 C 1.50705 * 109.46964 * 149.99508 * 10 9 7 14 14 O 1.21277 * 120.00056 * 8.56805 * 13 10 9 15 15 N 1.34777 * 119.99727 * 188.56661 * 13 10 9 16 16 C 1.46498 * 120.00086 * 4.58867 * 15 13 10 17 17 C 1.46497 * 119.99787 * 184.58538 * 15 13 10 18 18 C 1.50707 * 109.47038 * 89.99915 * 17 15 13 19 19 H 1.07997 * 119.99940 * 0.02562 * 18 17 15 20 20 C 1.37871 * 119.99953 * 179.97438 * 18 17 15 21 21 N 1.31521 * 119.99977 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00157 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46697 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46916 * 119.99744 * 22 20 18 25 25 H 1.48499 * 109.47331 * 240.00005 * 22 20 18 26 26 C 1.39874 * 107.92202 * 359.97438 * 5 4 3 27 27 N 1.30840 * 108.20035 * 0.02562 * 26 5 4 28 28 H 1.08996 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46963 * 300.00496 * 1 2 3 30 30 H 1.09001 * 109.46895 * 59.99842 * 1 2 3 31 31 H 1.09007 * 109.47158 * 240.00141 * 2 1 3 32 32 H 1.08997 * 109.47689 * 119.99758 * 2 1 3 33 33 H 1.08004 * 126.12051 * 359.75964 * 4 3 2 34 34 H 1.09001 * 109.47342 * 210.00244 * 6 5 4 35 35 H 1.08994 * 109.47205 * 329.99998 * 6 5 4 36 36 H 1.09002 * 109.47234 * 307.15432 * 12 10 9 37 37 H 1.09000 * 109.46815 * 67.15254 * 12 10 9 38 38 H 1.08991 * 109.47008 * 187.14981 * 12 10 9 39 39 H 1.08995 * 109.47357 * 86.11551 * 16 15 13 40 40 H 1.09001 * 109.46773 * 206.12052 * 16 15 13 41 41 H 1.08998 * 109.47159 * 326.11538 * 16 15 13 42 42 H 1.09000 * 109.47216 * 209.99644 * 17 15 13 43 43 H 1.09003 * 109.47344 * 330.00226 * 17 15 13 44 44 H 0.97002 * 119.99411 * 180.02562 * 21 20 18 45 45 H 1.08001 * 125.90365 * 180.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9212 0.8938 5 6 3.0713 3.2137 0.5462 6 6 3.9540 4.2002 1.2664 7 6 5.3459 4.1417 0.6917 8 8 5.5954 3.3777 -0.2105 9 8 6.3086 4.9383 1.1820 10 6 7.6256 4.8278 0.5806 11 1 7.5243 4.5353 -0.4645 12 6 8.4411 3.7718 1.3293 13 6 8.3290 6.1580 0.6640 14 8 7.8443 7.0607 1.3128 15 7 9.4968 6.3443 0.0174 16 6 10.0320 5.2895 -0.8470 17 6 10.2310 7.6017 0.1790 18 6 11.1833 7.4816 1.3409 19 1 11.2366 6.5607 1.9025 20 6 11.9872 8.5472 1.6863 21 7 11.9226 9.6685 1.0021 22 14 13.1681 8.3981 3.1260 23 1 13.0497 7.0445 3.7251 24 1 14.5588 8.6081 2.6493 25 1 12.8349 9.4230 4.1477 26 6 2.3121 3.4726 -0.5996 27 7 1.6803 2.3748 -0.9279 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3160 1.4137 1.7381 34 1 3.5518 5.2057 1.1426 35 1 3.9880 3.9506 2.3268 36 1 8.4354 3.9971 2.3958 37 1 8.0015 2.7883 1.1633 38 1 9.4673 3.7777 0.9622 39 1 9.6043 5.3856 -1.8449 40 1 11.1163 5.3833 -0.9058 41 1 9.7735 4.3148 -0.4333 42 1 10.7927 7.8140 -0.7307 43 1 9.5268 8.4119 0.3686 44 1 12.4885 10.4180 1.2449 45 1 2.2568 4.4156 -1.1231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781419088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:52 Heat of formation + Delta-G solvation = -58.826504 kcal Electronic energy + Delta-G solvation = -26915.135689 eV Core-core repulsion = 22934.357187 eV Total energy + Delta-G solvation = -3980.778502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.30280 -41.66851 -40.43325 -37.58745 -36.68230 -35.52824 -34.87269 -33.42889 -32.63551 -31.08871 -29.64409 -28.21710 -27.61759 -25.94540 -24.78432 -24.32578 -22.40681 -21.65018 -20.85708 -20.38906 -18.94174 -18.68225 -18.19948 -17.69885 -17.34026 -17.22641 -16.68813 -16.30726 -16.23129 -15.84352 -15.35141 -15.01334 -14.95472 -14.67059 -14.34846 -14.15608 -14.06191 -13.75481 -13.62469 -13.57082 -13.30086 -13.28648 -13.06798 -12.97447 -12.85775 -12.68439 -12.60690 -12.34521 -12.25134 -12.18853 -11.85275 -11.67320 -11.53648 -11.48073 -10.64460 -10.59494 -10.36288 -9.50542 -9.39206 -8.22211 -6.37076 0.92144 1.21789 1.32757 1.38662 1.41010 1.52559 1.62676 1.66789 1.92009 2.37442 2.53459 3.07955 3.42624 3.54641 3.71285 3.87721 3.90959 3.96192 4.08758 4.13962 4.20230 4.26771 4.35504 4.44274 4.60255 4.61086 4.66312 4.71853 4.74409 4.83660 4.87076 4.95963 4.97530 5.12058 5.14494 5.21417 5.23651 5.43153 5.53631 5.68960 5.79575 6.04097 6.15725 6.57589 6.72345 6.73437 6.78780 7.21715 7.37238 8.85533 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.034049 B = 0.002135 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.139010 B =13108.966205 C =13145.177463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 N -0.374 5.374 4 C 0.079 3.921 5 C -0.249 4.249 6 C -0.022 4.022 7 C 0.459 3.541 8 O -0.528 6.528 9 O -0.345 6.345 10 C 0.082 3.918 11 H 0.115 0.885 12 C -0.162 4.162 13 C 0.500 3.500 14 O -0.578 6.578 15 N -0.601 5.601 16 C 0.062 3.938 17 C 0.258 3.742 18 C -0.542 4.542 19 H 0.059 0.941 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.970 3.030 23 H -0.264 1.264 24 H -0.270 1.270 25 H -0.283 1.283 26 C 0.050 3.950 27 N -0.331 5.331 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.207 0.793 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.029 0.971 43 H 0.000 1.000 44 H 0.267 0.733 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.573 -22.822 -0.043 29.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 N -0.156 5.156 4 C -0.069 4.069 5 C -0.261 4.261 6 C -0.060 4.060 7 C 0.303 3.697 8 O -0.416 6.416 9 O -0.261 6.261 10 C 0.023 3.977 11 H 0.133 0.867 12 C -0.219 4.219 13 C 0.287 3.713 14 O -0.457 6.457 15 N -0.333 5.333 16 C -0.080 4.080 17 C 0.137 3.863 18 C -0.581 4.581 19 H 0.077 0.923 20 C -0.193 4.193 21 N -0.568 5.568 22 Si 0.794 3.206 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.209 1.209 26 C -0.136 4.136 27 N -0.152 5.152 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.223 0.777 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.047 0.953 43 H 0.018 0.982 44 H 0.076 0.924 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -19.509 -23.138 -0.861 30.277 hybrid contribution 1.389 1.075 0.753 1.911 sum -18.120 -22.062 -0.109 28.550 Atomic orbital electron populations 1.22001 0.93481 1.03955 1.02201 1.22056 0.96361 0.75993 1.05522 1.48974 1.35324 1.10870 1.20471 1.22858 0.93682 0.93885 0.96450 1.19555 1.08430 0.95820 1.02273 1.19612 0.83442 1.01437 1.01530 1.24743 0.88309 0.76298 0.80351 1.90622 1.82890 1.38412 1.29713 1.86661 1.19423 1.60423 1.59624 1.22420 0.81199 0.93300 1.00734 0.86726 1.22271 1.00896 0.97485 1.01245 1.20712 0.81641 0.89383 0.79584 1.90652 1.66606 1.45510 1.42975 1.48048 1.20817 1.18749 1.45703 1.22277 1.01165 0.90551 0.94008 1.18867 0.90031 0.81030 0.96365 1.21730 1.21283 0.99793 1.15295 0.92295 1.25893 0.99141 0.94569 0.99686 1.70070 1.40753 1.04195 1.41805 0.85325 0.78314 0.78409 0.78503 1.18775 1.19555 1.20859 1.24073 0.95542 0.97934 0.96059 1.77256 1.25413 0.97625 1.14936 0.88319 0.92554 0.93335 0.89628 0.85385 0.77654 0.85504 0.84218 0.91443 0.88805 0.88375 0.91167 0.90207 0.88506 0.95327 0.98171 0.92393 0.79321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 10.10 71.98 0.73 -0.68 16 2 C 0.12 1.13 7.23 86.38 0.62 1.75 16 3 N -0.37 -6.51 3.68 -348.06 -1.28 -7.79 16 4 C 0.08 1.22 11.36 83.54 0.95 2.17 16 5 C -0.25 -4.71 4.59 -20.15 -0.09 -4.80 16 6 C -0.02 -0.38 6.30 29.10 0.18 -0.20 16 7 C 0.46 11.92 7.92 71.24 0.56 12.48 16 8 O -0.53 -15.80 15.25 21.96 0.33 -15.47 16 9 O -0.35 -11.04 9.43 -45.15 -0.43 -11.46 16 10 C 0.08 2.65 2.16 29.85 0.06 2.72 16 11 H 0.12 3.40 6.73 -2.39 -0.02 3.39 16 12 C -0.16 -4.18 9.14 71.98 0.66 -3.52 16 13 C 0.50 21.85 7.03 87.66 0.62 22.47 16 14 O -0.58 -31.23 16.08 15.63 0.25 -30.98 16 15 N -0.60 -25.94 2.86 -851.13 -2.43 -28.37 16 16 C 0.06 1.86 9.80 127.77 1.25 3.12 16 17 C 0.26 13.99 5.18 85.64 0.44 14.43 16 18 C -0.54 -30.94 9.39 25.60 0.24 -30.70 16 19 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 20 C 0.01 0.35 5.46 84.65 0.46 0.81 16 21 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 22 Si 0.97 44.41 29.54 68.60 2.03 46.43 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 C 0.05 1.07 11.96 85.24 1.02 2.09 16 27 N -0.33 -7.72 12.42 -57.02 -0.71 -8.42 16 28 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.79 8.14 -2.38 -0.02 0.78 16 32 H 0.13 0.35 8.07 -2.39 -0.02 0.33 16 33 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.10 2.36 5.46 -2.39 -0.01 2.35 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 2.43 8.04 -2.39 -0.02 2.41 16 41 H 0.10 2.31 4.31 -2.39 -0.01 2.30 16 42 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 43 H 0.00 0.01 7.36 -2.39 -0.02 -0.01 16 44 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 45 H 0.19 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -84.30 385.04 6.75 -77.55 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.99 Total: 12.13 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 7.71 Total: 22.14 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -4.14 Total: -100.33 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: 0.16 Total: -57.91 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -84.30 6.75 -77.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781419088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.720 kcal (2) G-P(sol) polarization free energy of solvation -84.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds