Wall clock time and date at job start Tue Mar 31 2020 14:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47434 * 2 1 4 4 C 1.34947 * 126.03589 * 124.99409 * 3 2 1 5 5 C 1.35314 * 107.74187 * 180.02562 * 4 3 2 6 6 C 1.50703 * 126.03619 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47478 * 90.00609 * 6 5 4 8 8 O 1.20833 * 119.99655 * 359.97438 * 7 6 5 9 9 O 1.34231 * 120.00640 * 180.27539 * 7 6 5 10 10 C 1.45193 * 117.00126 * 179.71955 * 9 7 6 11 11 H 1.08993 * 109.47680 * 330.00031 * 10 9 7 12 12 C 1.52996 * 109.46935 * 90.00449 * 10 9 7 13 13 C 1.50704 * 109.46716 * 209.99655 * 10 9 7 14 14 O 1.21276 * 120.00460 * 0.02562 * 13 10 9 15 15 N 1.34782 * 119.99734 * 180.02562 * 13 10 9 16 16 C 1.46503 * 119.99939 * 0.02562 * 15 13 10 17 17 C 1.46502 * 119.99909 * 180.02562 * 15 13 10 18 18 C 1.50699 * 109.47072 * 90.00093 * 17 15 13 19 19 H 1.07998 * 120.00065 * 359.97438 * 18 17 15 20 20 C 1.37871 * 119.99831 * 180.02562 * 18 17 15 21 21 N 1.31518 * 120.00389 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00012 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47206 * 59.99422 * 22 20 18 24 24 H 1.48496 * 109.47333 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46996 * 299.99675 * 22 20 18 26 26 C 1.39862 * 107.92382 * 0.26929 * 5 4 3 27 27 N 1.30843 * 108.20278 * 359.55017 * 26 5 4 28 28 H 1.08999 * 109.47043 * 59.99590 * 1 2 3 29 29 H 1.08992 * 109.47706 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47126 * 300.00650 * 1 2 3 31 31 H 1.08993 * 109.47187 * 239.99442 * 2 1 3 32 32 H 1.09002 * 109.46876 * 119.99899 * 2 1 3 33 33 H 1.08001 * 126.12696 * 0.05030 * 4 3 2 34 34 H 1.09000 * 109.47523 * 330.00062 * 6 5 4 35 35 H 1.09006 * 109.46998 * 209.99950 * 6 5 4 36 36 H 1.09005 * 109.47320 * 299.99195 * 12 10 9 37 37 H 1.08999 * 109.47835 * 59.99711 * 12 10 9 38 38 H 1.09004 * 109.47062 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.46636 * 90.00251 * 16 15 13 40 40 H 1.08998 * 109.46861 * 209.99901 * 16 15 13 41 41 H 1.09001 * 109.47185 * 330.00012 * 16 15 13 42 42 H 1.09000 * 109.46638 * 210.00123 * 17 15 13 43 43 H 1.08994 * 109.47029 * 330.00186 * 17 15 13 44 44 H 0.96998 * 120.00360 * 179.97438 * 21 20 18 45 45 H 1.07999 * 125.90106 * 179.73846 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9210 0.8940 5 6 3.0713 3.2136 0.5463 6 6 3.9549 4.1998 1.2660 7 6 5.3463 4.1411 0.6903 8 8 5.5951 3.3765 -0.2117 9 8 6.3108 4.9338 1.1834 10 6 7.6285 4.8193 0.5845 11 1 7.7759 3.8018 0.2225 12 6 7.7439 5.7986 -0.5852 13 6 8.6787 5.1426 1.6159 14 8 8.3491 5.4399 2.7445 15 7 9.9844 5.1015 1.2839 16 6 10.3825 4.7430 -0.0797 17 6 11.0053 5.4154 2.2866 18 6 11.4077 4.1536 3.0057 19 1 10.9486 3.2122 2.7424 20 6 12.3613 4.2013 4.0003 21 7 12.9201 5.3478 4.3212 22 14 12.8607 2.6372 4.8912 23 1 13.4106 1.6644 3.9132 24 1 13.8955 2.9552 5.9076 25 1 11.6731 2.0482 5.5607 26 6 2.3070 3.4743 -0.5956 27 7 1.6801 2.3749 -0.9276 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3193 1.4123 1.7357 34 1 3.9896 3.9501 2.3265 35 1 3.5528 5.2054 1.1426 36 1 6.9843 5.5648 -1.3312 37 1 7.5966 6.8161 -0.2232 38 1 8.7330 5.7123 -1.0351 39 1 10.4435 5.6446 -0.6892 40 1 11.3560 4.2533 -0.0570 41 1 9.6443 4.0645 -0.5072 42 1 11.8770 5.8470 1.7946 43 1 10.6022 6.1297 3.0043 44 1 13.5907 5.3813 5.0212 45 1 2.2472 4.4190 -1.1155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781419089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:55 Heat of formation + Delta-G solvation = -59.075114 kcal Electronic energy + Delta-G solvation = -26977.258940 eV Core-core repulsion = 22996.469658 eV Total energy + Delta-G solvation = -3980.789283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.31257 -41.67615 -40.44138 -37.58552 -36.70787 -35.54275 -34.91645 -33.41451 -32.62206 -31.10329 -29.57298 -28.22506 -27.68303 -25.92746 -24.78898 -24.31186 -22.42692 -21.65771 -20.87222 -20.40720 -18.99255 -18.65187 -18.18177 -17.76967 -17.37507 -17.14395 -16.70667 -16.41709 -16.19244 -15.75184 -15.32546 -15.11080 -14.80590 -14.69836 -14.32252 -14.21555 -14.05123 -13.84496 -13.65078 -13.50760 -13.35675 -13.24258 -13.04448 -12.96543 -12.81612 -12.70844 -12.58205 -12.39957 -12.26948 -12.18814 -11.84844 -11.73497 -11.54733 -11.49399 -10.64412 -10.59400 -10.37430 -9.50849 -9.40564 -8.23146 -6.37882 0.89882 1.20349 1.33598 1.37080 1.40967 1.48334 1.64259 1.64912 1.91715 2.36326 2.53445 3.06580 3.43090 3.53537 3.69911 3.88925 3.90661 3.94360 4.07051 4.12976 4.20428 4.32550 4.34406 4.43141 4.56853 4.65308 4.68062 4.70864 4.73323 4.82314 4.89025 4.95662 4.96820 5.11641 5.12184 5.20581 5.21860 5.43181 5.51926 5.70305 5.78760 6.03883 6.11894 6.57612 6.70568 6.72796 6.78300 7.21614 7.36711 8.83872 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.002475 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.619346 B =11311.305586 C =12280.561282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.119 3.881 3 N -0.375 5.375 4 C 0.071 3.929 5 C -0.247 4.247 6 C -0.022 4.022 7 C 0.459 3.541 8 O -0.529 6.529 9 O -0.345 6.345 10 C 0.081 3.919 11 H 0.110 0.890 12 C -0.166 4.166 13 C 0.499 3.501 14 O -0.578 6.578 15 N -0.600 5.600 16 C 0.069 3.931 17 C 0.260 3.740 18 C -0.547 4.547 19 H 0.051 0.949 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.967 3.033 23 H -0.261 1.261 24 H -0.277 1.277 25 H -0.278 1.278 26 C 0.056 3.944 27 N -0.329 5.329 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.197 0.803 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.033 0.967 43 H 0.002 0.998 44 H 0.268 0.732 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.932 -7.396 -11.793 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.000 4.000 3 N -0.157 5.157 4 C -0.077 4.077 5 C -0.259 4.259 6 C -0.060 4.060 7 C 0.303 3.697 8 O -0.418 6.418 9 O -0.261 6.261 10 C 0.022 3.978 11 H 0.127 0.873 12 C -0.223 4.223 13 C 0.286 3.714 14 O -0.458 6.458 15 N -0.333 5.333 16 C -0.073 4.073 17 C 0.139 3.861 18 C -0.585 4.585 19 H 0.070 0.930 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.791 3.209 23 H -0.185 1.185 24 H -0.202 1.202 25 H -0.204 1.204 26 C -0.130 4.130 27 N -0.150 5.150 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.141 0.859 33 H 0.214 0.786 34 H 0.147 0.853 35 H 0.157 0.843 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.051 0.949 43 H 0.020 0.980 44 H 0.077 0.923 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -22.713 -8.107 -12.225 27.038 hybrid contribution 1.295 -0.200 1.181 1.764 sum -21.417 -8.307 -11.045 25.489 Atomic orbital electron populations 1.21993 0.93224 1.03975 1.02303 1.22041 0.96544 0.76108 1.05342 1.48942 1.35386 1.10912 1.20439 1.22825 0.93961 0.94344 0.96534 1.19555 1.08253 0.95541 1.02539 1.19618 0.83492 1.01936 1.00961 1.24740 0.88559 0.76075 0.80342 1.90627 1.82855 1.38350 1.29974 1.86634 1.18949 1.59946 1.60576 1.22418 0.79503 1.03456 0.92393 0.87287 1.22386 1.06065 0.98518 0.95327 1.20701 0.83971 0.78107 0.88573 1.90656 1.81693 1.49762 1.23643 1.48047 1.05110 1.66664 1.13436 1.22222 1.02474 1.01578 0.81015 1.18842 0.85310 0.95392 0.86543 1.21650 1.22213 0.94604 1.20052 0.93027 1.25842 0.95966 0.99922 0.97307 1.70032 1.28108 1.26706 1.31647 0.85481 0.77814 0.79175 0.78424 1.18548 1.20200 1.20354 1.24118 0.95162 0.98035 0.95689 1.77242 1.25521 0.97527 1.14721 0.93021 0.88371 0.92579 0.89575 0.85907 0.78594 0.85329 0.84308 0.89621 0.91215 0.87316 0.89657 0.90750 0.89507 0.94929 0.98016 0.92297 0.78435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 10.10 71.98 0.73 -0.84 16 2 C 0.12 1.35 7.23 86.38 0.62 1.97 16 3 N -0.37 -7.09 3.68 -348.07 -1.28 -8.37 16 4 C 0.07 1.28 11.36 83.54 0.95 2.23 16 5 C -0.25 -4.87 4.59 -20.15 -0.09 -4.96 16 6 C -0.02 -0.39 6.30 29.10 0.18 -0.21 16 7 C 0.46 12.32 7.92 71.23 0.56 12.88 16 8 O -0.53 -16.50 15.25 21.94 0.33 -16.16 16 9 O -0.34 -11.15 9.41 -45.07 -0.42 -11.58 16 10 C 0.08 2.62 2.18 29.85 0.07 2.68 16 11 H 0.11 3.42 6.42 -2.39 -0.02 3.40 16 12 C -0.17 -3.98 9.18 71.98 0.66 -3.32 16 13 C 0.50 21.72 7.15 87.66 0.63 22.35 16 14 O -0.58 -31.17 16.08 15.78 0.25 -30.92 16 15 N -0.60 -25.59 2.86 -851.12 -2.43 -28.02 16 16 C 0.07 2.02 8.80 127.77 1.12 3.14 16 17 C 0.26 13.96 5.16 85.63 0.44 14.41 16 18 C -0.55 -31.52 9.39 25.60 0.24 -31.28 16 19 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 20 C 0.01 0.52 5.46 84.65 0.46 0.98 16 21 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 22 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 C 0.06 1.15 11.96 85.23 1.02 2.17 16 27 N -0.33 -7.62 12.42 -57.03 -0.71 -8.33 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.12 0.70 8.07 -2.39 -0.02 0.68 16 33 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.14 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.11 2.19 4.53 -2.38 -0.01 2.18 16 39 H 0.09 1.96 6.95 -2.39 -0.02 1.94 16 40 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 41 H 0.09 2.08 6.00 -2.39 -0.01 2.06 16 42 H 0.03 1.74 8.07 -2.39 -0.02 1.72 16 43 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 44 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -84.02 383.54 6.64 -77.37 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.99 Total: 12.36 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 7.60 Total: 22.20 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -4.14 Total: -100.03 kcal Atomic # 8 Polarization: -58.82 SS G_CDS: 0.16 Total: -58.66 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -84.02 6.64 -77.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781419089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.298 kcal (2) G-P(sol) polarization free energy of solvation -84.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds