Wall clock time and date at job start Tue Mar 31 2020 13:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47150 * 2 1 4 4 N 1.46496 * 109.46709 * 180.02562 * 3 2 1 5 5 C 1.35068 * 125.56890 * 89.97540 * 4 3 2 6 6 O 1.21306 * 127.27909 * 0.02562 * 5 4 3 7 7 C 1.49974 * 105.43495 * 179.97438 * 5 4 3 8 8 O 1.21295 * 127.28737 * 179.97438 * 7 5 4 9 9 N 1.35064 * 105.42928 * 0.02562 * 7 5 4 10 10 C 1.46505 * 125.56312 * 179.73684 * 9 7 5 11 11 N 1.46904 * 109.47095 * 90.02720 * 10 9 7 12 12 C 1.46857 * 110.99509 * 279.20388 * 11 10 9 13 13 C 1.53035 * 109.51877 * 174.16417 * 12 11 10 14 14 C 1.53114 * 109.28180 * 59.17832 * 13 12 11 15 15 C 1.50699 * 109.57652 * 182.40639 * 14 13 12 16 16 H 1.08001 * 120.00215 * 119.71788 * 15 14 13 17 17 C 1.37877 * 120.00067 * 299.71983 * 15 14 13 18 18 N 1.31518 * 120.00172 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00257 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46959 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47422 * 119.99363 * 19 17 15 22 22 H 1.48493 * 109.47311 * 239.99938 * 19 17 15 23 23 C 1.53114 * 109.16175 * 302.34835 * 14 13 12 24 24 C 1.46845 * 110.99949 * 154.99815 * 11 10 9 25 25 C 1.34272 * 108.87001 * 359.97438 * 9 7 5 26 26 O 1.21481 * 124.29980 * 180.02562 * 25 9 7 27 27 H 1.08999 * 109.46865 * 59.99861 * 1 2 3 28 28 H 1.09003 * 109.47300 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46801 * 300.00091 * 1 2 3 30 30 H 1.09005 * 109.46708 * 239.99428 * 2 1 3 31 31 H 1.08999 * 109.46865 * 120.00139 * 2 1 3 32 32 H 1.08991 * 109.47520 * 60.00006 * 3 2 1 33 33 H 1.09003 * 109.46784 * 299.99363 * 3 2 1 34 34 H 1.08999 * 109.46546 * 210.01979 * 10 9 7 35 35 H 1.08998 * 109.47229 * 330.02142 * 10 9 7 36 36 H 1.09000 * 109.46335 * 294.17803 * 12 11 10 37 37 H 1.09002 * 109.46011 * 54.14561 * 12 11 10 38 38 H 1.09001 * 109.50500 * 299.23772 * 13 12 11 39 39 H 1.09003 * 109.53319 * 179.14174 * 13 12 11 40 40 H 1.09006 * 109.52225 * 62.24946 * 14 13 12 41 41 H 0.96999 * 120.00391 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.49989 * 297.70917 * 23 14 13 43 43 H 1.09005 * 109.53335 * 177.61747 * 23 14 13 44 44 H 1.08997 * 109.46096 * 305.85108 * 24 11 10 45 45 H 1.09005 * 109.46528 * 65.83178 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2902 1.4420 -1.0996 6 8 3.9320 1.4421 -2.2586 7 6 5.6985 1.4427 -0.5840 8 8 6.7204 1.4422 -1.2375 9 7 5.5883 1.4428 0.7622 10 6 6.7066 1.4379 1.7086 11 7 7.0857 2.8213 2.0259 12 6 7.9383 3.3879 0.9729 13 6 8.1929 4.8688 1.2627 14 6 8.8744 5.0071 2.6268 15 6 9.0749 6.4664 2.9454 16 1 8.6167 6.8951 3.8244 17 6 9.8434 7.2541 2.1148 18 7 10.4019 6.7319 1.0447 19 14 10.0914 9.0630 2.5093 20 1 9.3628 9.4017 3.7583 21 1 11.5397 9.3360 2.6912 22 1 9.5683 9.8896 1.3921 23 6 7.9884 4.3663 3.6986 24 6 7.7397 2.9000 3.3383 25 6 4.2866 1.4428 1.0913 26 8 3.8689 1.4434 2.2321 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8901 34 1 6.4069 0.9248 2.6224 35 1 7.5569 0.9210 1.2638 36 1 8.8883 2.8541 0.9483 37 1 7.4401 3.2868 0.0086 38 1 7.2444 5.4058 1.2738 39 1 8.8381 5.2858 0.4895 40 1 9.8407 4.5032 2.6040 41 1 10.9422 7.2862 0.4601 42 1 7.0367 4.8954 3.7480 43 1 8.4873 4.4239 4.6661 44 1 7.0973 2.4447 4.0920 45 1 8.6908 2.3686 3.3026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781572476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:13 Heat of formation + Delta-G solvation = -59.107652 kcal Electronic energy + Delta-G solvation = -28343.602721 eV Core-core repulsion = 24362.812028 eV Total energy + Delta-G solvation = -3980.790694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.46658 -39.36892 -39.28934 -38.09892 -36.61238 -36.07709 -34.27503 -33.09646 -31.20330 -29.92242 -28.44816 -26.37696 -25.74120 -24.52117 -22.78586 -22.21546 -22.09803 -21.60060 -20.96167 -18.73440 -18.04834 -17.79225 -17.23441 -16.70780 -16.45011 -15.96904 -15.59448 -15.49042 -15.25653 -14.72449 -14.58567 -14.41088 -14.28355 -13.77109 -13.39303 -13.04337 -12.91059 -12.67634 -12.61199 -12.53954 -12.40372 -11.93956 -11.89759 -11.54165 -11.27235 -11.15032 -11.03682 -10.86337 -10.56624 -10.34073 -10.27983 -10.26884 -10.18363 -9.98119 -9.48117 -9.03146 -8.76626 -8.32019 -8.10114 -5.98812 -4.04294 0.15148 1.61663 1.88992 2.35134 2.45745 3.29884 3.38261 3.41981 3.71128 4.17430 4.28330 4.41780 4.44450 4.61047 4.66616 4.91929 4.98273 5.10291 5.18851 5.23234 5.31518 5.31868 5.38760 5.55759 5.57953 5.68893 5.74940 5.82132 5.94512 6.10504 6.18727 6.38539 6.50854 6.52407 6.56959 6.77571 6.95347 7.01429 7.03193 7.26994 7.39546 7.46122 7.53043 7.76861 7.99602 8.11340 8.45414 8.99510 9.60502 11.07454 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.003017 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.612661 B = 9278.368373 C = 9463.897619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.120 3.880 4 N -0.575 5.575 5 C 0.509 3.491 6 O -0.417 6.417 7 C 0.506 3.494 8 O -0.406 6.406 9 N -0.561 5.561 10 C 0.284 3.716 11 N -0.550 5.550 12 C 0.055 3.945 13 C -0.103 4.103 14 C 0.047 3.953 15 C -0.510 4.510 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.106 4.106 24 C 0.068 3.932 25 C 0.715 3.285 26 O -0.483 6.483 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.032 0.968 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.095 0.905 40 H 0.022 0.978 41 H 0.259 0.741 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.872 -15.521 -1.374 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.000 4.000 4 N -0.325 5.325 5 C 0.290 3.710 6 O -0.282 6.282 7 C 0.286 3.714 8 O -0.270 6.270 9 N -0.311 5.311 10 C 0.073 3.927 11 N -0.277 5.277 12 C -0.072 4.072 13 C -0.142 4.142 14 C 0.029 3.971 15 C -0.548 4.548 16 H 0.073 0.927 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.144 4.144 24 C -0.059 4.059 25 C 0.418 3.582 26 O -0.351 6.351 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.113 0.887 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.014 -15.176 -1.839 22.139 hybrid contribution 0.867 0.641 0.036 1.079 sum -15.147 -14.535 -1.803 21.070 Atomic orbital electron populations 1.21670 0.93987 1.02517 1.02421 1.21923 0.97228 0.95727 1.03267 1.21908 0.73507 0.99013 1.05569 1.46792 1.09526 1.68812 1.07355 1.21002 0.87974 0.76419 0.85610 1.90828 1.79647 1.40963 1.16733 1.20870 0.90701 0.76969 0.82887 1.90867 1.33333 1.40066 1.62709 1.46964 1.08035 1.67575 1.08501 1.22139 0.85912 0.92634 0.91970 1.61639 1.45609 1.15785 1.04642 1.22430 0.93395 0.99253 0.92118 1.21676 1.00200 0.89878 1.02416 1.18700 0.93133 0.95338 0.89965 1.21217 1.30212 0.94291 1.09121 0.92651 1.24978 0.95593 0.98372 0.95127 1.69877 1.33496 1.35641 1.14015 0.86574 0.77774 0.85555 0.78312 1.19824 1.21115 1.21099 1.21690 1.00847 0.92089 0.99751 1.22104 0.95900 1.00005 0.87941 1.15882 0.80847 0.76580 0.84885 1.91004 1.76128 1.49635 1.18330 0.92192 0.91965 0.92054 0.91239 0.90914 0.87809 0.88163 0.87257 0.90288 0.94979 0.92685 0.93941 0.88695 0.95951 0.93092 0.92352 0.92680 0.91675 0.94900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.14 -0.94 6.26 -26.73 -0.17 -1.11 16 3 C 0.12 0.93 5.86 -4.04 -0.02 0.90 16 4 N -0.58 -6.15 2.66 -121.22 -0.32 -6.47 16 5 C 0.51 6.26 8.31 -11.20 -0.09 6.17 16 6 O -0.42 -5.77 17.88 5.54 0.10 -5.67 16 7 C 0.51 6.92 7.54 -11.21 -0.08 6.84 16 8 O -0.41 -6.54 16.65 5.54 0.09 -6.44 16 9 N -0.56 -7.33 2.86 -124.52 -0.36 -7.68 16 10 C 0.28 3.73 5.70 -63.31 -0.36 3.37 16 11 N -0.55 -9.23 4.75 -238.57 -1.13 -10.36 16 12 C 0.05 1.06 5.31 -3.83 -0.02 1.04 16 13 C -0.10 -2.43 5.12 -26.65 -0.14 -2.56 16 14 C 0.05 1.14 2.16 -91.65 -0.20 0.95 16 15 C -0.51 -13.83 8.56 -34.44 -0.29 -14.13 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 18 N -0.89 -25.32 11.37 55.43 0.63 -24.69 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.11 -2.12 5.32 -26.66 -0.14 -2.26 16 24 C 0.07 1.11 5.40 -3.84 -0.02 1.09 16 25 C 0.72 8.96 8.32 -87.81 -0.73 8.22 16 26 O -0.48 -6.92 17.26 5.38 0.09 -6.82 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.75 7.98 -51.93 -0.41 0.34 16 33 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.11 1.22 7.54 -51.93 -0.39 0.83 16 35 H 0.08 0.97 7.88 -51.93 -0.41 0.56 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 1.06 5.92 -51.93 -0.31 0.75 16 38 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 2.51 6.18 -51.93 -0.32 2.19 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.92 7.91 -51.93 -0.41 0.51 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -30.77 370.50 -9.20 -39.97 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.87 Total: -3.38 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -2.00 Total: 9.71 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -1.18 Total: -49.20 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.28 Total: -18.94 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.77 -9.20 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781572476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.137 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds