Wall clock time and date at job start Tue Mar 31 2020 13:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47150 * 2 1 4 4 N 1.46496 * 109.46709 * 180.02562 * 3 2 1 5 5 C 1.35068 * 125.56890 * 89.97540 * 4 3 2 6 6 O 1.21306 * 127.27909 * 0.02562 * 5 4 3 7 7 C 1.49974 * 105.43495 * 179.97438 * 5 4 3 8 8 O 1.21295 * 127.28737 * 179.97438 * 7 5 4 9 9 N 1.35064 * 105.42928 * 0.02562 * 7 5 4 10 10 C 1.46505 * 125.56312 * 179.73684 * 9 7 5 11 11 N 1.46904 * 109.47095 * 90.02720 * 10 9 7 12 12 C 1.46857 * 110.99509 * 279.20388 * 11 10 9 13 13 C 1.53035 * 109.51877 * 174.16417 * 12 11 10 14 14 C 1.53114 * 109.28180 * 59.17832 * 13 12 11 15 15 C 1.50699 * 109.57652 * 182.40639 * 14 13 12 16 16 H 1.08001 * 120.00215 * 119.71788 * 15 14 13 17 17 C 1.37877 * 120.00067 * 299.71983 * 15 14 13 18 18 N 1.31518 * 120.00172 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00257 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46959 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47422 * 119.99363 * 19 17 15 22 22 H 1.48493 * 109.47311 * 239.99938 * 19 17 15 23 23 C 1.53114 * 109.16175 * 302.34835 * 14 13 12 24 24 C 1.46845 * 110.99949 * 154.99815 * 11 10 9 25 25 C 1.34272 * 108.87001 * 359.97438 * 9 7 5 26 26 O 1.21481 * 124.29980 * 180.02562 * 25 9 7 27 27 H 1.08999 * 109.46865 * 59.99861 * 1 2 3 28 28 H 1.09003 * 109.47300 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46801 * 300.00091 * 1 2 3 30 30 H 1.09005 * 109.46708 * 239.99428 * 2 1 3 31 31 H 1.08999 * 109.46865 * 120.00139 * 2 1 3 32 32 H 1.08991 * 109.47520 * 60.00006 * 3 2 1 33 33 H 1.09003 * 109.46784 * 299.99363 * 3 2 1 34 34 H 1.08999 * 109.46546 * 210.01979 * 10 9 7 35 35 H 1.08998 * 109.47229 * 330.02142 * 10 9 7 36 36 H 1.09000 * 109.46335 * 294.17803 * 12 11 10 37 37 H 1.09002 * 109.46011 * 54.14561 * 12 11 10 38 38 H 1.09001 * 109.50500 * 299.23772 * 13 12 11 39 39 H 1.09003 * 109.53319 * 179.14174 * 13 12 11 40 40 H 1.09006 * 109.52225 * 62.24946 * 14 13 12 41 41 H 0.96999 * 120.00391 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.49989 * 297.70917 * 23 14 13 43 43 H 1.09005 * 109.53335 * 177.61747 * 23 14 13 44 44 H 1.08997 * 109.46096 * 305.85108 * 24 11 10 45 45 H 1.09005 * 109.46528 * 65.83178 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2902 1.4420 -1.0996 6 8 3.9320 1.4421 -2.2586 7 6 5.6985 1.4427 -0.5840 8 8 6.7204 1.4422 -1.2375 9 7 5.5883 1.4428 0.7622 10 6 6.7066 1.4379 1.7086 11 7 7.0857 2.8213 2.0259 12 6 7.9383 3.3879 0.9729 13 6 8.1929 4.8688 1.2627 14 6 8.8744 5.0071 2.6268 15 6 9.0749 6.4664 2.9454 16 1 8.6167 6.8951 3.8244 17 6 9.8434 7.2541 2.1148 18 7 10.4019 6.7319 1.0447 19 14 10.0914 9.0630 2.5093 20 1 9.3628 9.4017 3.7583 21 1 11.5397 9.3360 2.6912 22 1 9.5683 9.8896 1.3921 23 6 7.9884 4.3663 3.6986 24 6 7.7397 2.9000 3.3383 25 6 4.2866 1.4428 1.0913 26 8 3.8689 1.4434 2.2321 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8901 34 1 6.4069 0.9248 2.6224 35 1 7.5569 0.9210 1.2638 36 1 8.8883 2.8541 0.9483 37 1 7.4401 3.2868 0.0086 38 1 7.2444 5.4058 1.2738 39 1 8.8381 5.2858 0.4895 40 1 9.8407 4.5032 2.6040 41 1 10.9422 7.2862 0.4601 42 1 7.0367 4.8954 3.7480 43 1 8.4873 4.4239 4.6661 44 1 7.0973 2.4447 4.0920 45 1 8.6908 2.3686 3.3026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781572476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:12 Heat of formation + Delta-G solvation = -78.339872 kcal Electronic energy + Delta-G solvation = -28344.436693 eV Core-core repulsion = 24362.812028 eV Total energy + Delta-G solvation = -3981.624665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.48927 -40.45043 -40.43968 -39.50628 -37.64471 -37.06584 -35.70215 -34.27309 -32.86720 -31.54267 -29.48459 -27.77896 -26.73580 -25.96664 -23.98864 -23.57059 -23.29824 -22.65577 -21.99585 -20.43060 -19.07199 -18.83562 -18.44652 -18.27350 -17.73093 -17.11895 -16.85781 -16.53212 -16.41479 -15.87518 -15.78654 -15.73908 -15.47996 -14.97646 -14.72670 -14.41196 -14.28265 -14.12725 -13.94653 -13.31397 -13.19172 -13.17148 -13.08323 -12.93102 -12.70057 -12.44741 -12.36591 -12.16382 -12.09419 -11.92667 -11.70901 -11.54135 -11.32521 -11.29142 -11.04442 -10.82110 -10.69034 -10.39095 -9.46307 -8.08895 -6.21784 -0.90863 0.66578 0.86667 1.32953 1.38754 1.41223 1.42813 1.52031 2.43023 2.67310 2.89458 3.18512 3.42393 3.82148 3.85465 4.01229 4.04814 4.09000 4.17564 4.22376 4.32697 4.36791 4.42783 4.54038 4.63948 4.69081 4.73606 4.81612 4.86714 4.95258 5.06317 5.13954 5.17883 5.19818 5.29018 5.38323 5.42597 5.52333 5.54928 5.61506 5.90078 5.92628 5.99075 6.09959 6.20252 6.39801 6.43453 6.90505 7.46290 8.95701 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.003017 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.612661 B = 9278.368373 C = 9463.897619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.112 3.888 4 N -0.565 5.565 5 C 0.520 3.480 6 O -0.431 6.431 7 C 0.507 3.493 8 O -0.434 6.434 9 N -0.561 5.561 10 C 0.283 3.717 11 N -0.560 5.560 12 C 0.073 3.927 13 C -0.094 4.094 14 C 0.044 3.956 15 C -0.530 4.530 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.918 5.918 19 Si 0.951 3.049 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.283 1.283 23 C -0.099 4.099 24 C 0.074 3.926 25 C 0.721 3.279 26 O -0.495 6.495 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.028 0.972 37 H 0.054 0.946 38 H 0.025 0.975 39 H 0.059 0.941 40 H -0.005 1.005 41 H 0.259 0.741 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.499 -16.502 -0.345 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C -0.007 4.007 4 N -0.313 5.313 5 C 0.301 3.699 6 O -0.297 6.297 7 C 0.288 3.712 8 O -0.300 6.300 9 N -0.310 5.310 10 C 0.073 3.927 11 N -0.287 5.287 12 C -0.055 4.055 13 C -0.133 4.133 14 C 0.025 3.975 15 C -0.568 4.568 16 H 0.070 0.930 17 C -0.188 4.188 18 N -0.558 5.558 19 Si 0.777 3.223 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.210 1.210 23 C -0.137 4.137 24 C -0.053 4.053 25 C 0.424 3.576 26 O -0.364 6.364 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.157 0.843 35 H 0.110 0.890 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.013 0.987 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.119 0.881 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.681 -16.171 -0.788 23.974 hybrid contribution 1.340 0.940 -0.266 1.658 sum -16.341 -15.231 -1.054 22.363 Atomic orbital electron populations 1.21660 0.92617 1.03074 1.02954 1.21881 0.98305 0.94636 1.02787 1.22261 0.71548 1.00210 1.06631 1.46840 1.10469 1.67848 1.06148 1.20692 0.87475 0.76141 0.85598 1.90829 1.79671 1.41894 1.17351 1.21104 0.90976 0.76082 0.83049 1.90855 1.34454 1.41392 1.63286 1.46954 1.08454 1.67336 1.08288 1.22332 0.86404 0.90521 0.93410 1.61527 1.44775 1.18430 1.03951 1.22057 0.93856 0.96479 0.93101 1.21413 0.98234 0.92625 1.00989 1.18673 0.92812 0.94134 0.91873 1.21615 1.30118 0.96069 1.08966 0.93013 1.25743 0.95533 1.02435 0.95064 1.70019 1.34029 1.36972 1.14771 0.85609 0.77770 0.80694 0.78203 1.19095 1.20643 1.20953 1.21542 0.99208 0.94402 0.98570 1.22049 0.97325 0.97432 0.88475 1.15862 0.80650 0.76124 0.84961 1.91002 1.76263 1.50262 1.18873 0.91616 0.91428 0.91585 0.91683 0.91425 0.86930 0.86945 0.84338 0.89034 0.95342 0.92780 0.95625 0.92294 0.98728 0.93179 0.93357 0.91958 0.88123 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 71.98 0.71 -0.42 16 2 C -0.14 -1.54 6.26 30.60 0.19 -1.35 16 3 C 0.11 1.50 5.86 86.38 0.51 2.00 16 4 N -0.56 -11.05 2.66 -774.23 -2.06 -13.11 16 5 C 0.52 12.17 8.31 87.38 0.73 12.90 16 6 O -0.43 -11.53 17.88 -3.11 -0.06 -11.58 16 7 C 0.51 13.39 7.54 87.38 0.66 14.04 16 8 O -0.43 -13.84 16.65 -3.08 -0.05 -13.90 16 9 N -0.56 -13.59 2.86 -784.67 -2.25 -15.84 16 10 C 0.28 6.68 5.70 170.80 0.97 7.66 16 11 N -0.56 -17.79 4.75 -908.69 -4.32 -22.11 16 12 C 0.07 2.81 5.31 86.32 0.46 3.27 16 13 C -0.09 -4.55 5.12 30.64 0.16 -4.39 16 14 C 0.04 2.16 2.16 -11.46 -0.02 2.13 16 15 C -0.53 -29.27 8.56 25.60 0.22 -29.05 16 16 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 17 C 0.01 0.59 5.31 84.65 0.45 1.04 16 18 N -0.92 -53.66 11.37 21.45 0.24 -53.42 16 19 Si 0.95 44.17 29.54 68.60 2.03 46.19 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 23 C -0.10 -3.90 5.32 30.64 0.16 -3.74 16 24 C 0.07 2.24 5.40 86.32 0.47 2.71 16 25 C 0.72 16.50 8.32 179.37 1.49 18.00 16 26 O -0.49 -12.87 17.26 -3.66 -0.06 -12.93 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 1.36 7.98 -2.39 -0.02 1.34 16 33 H 0.11 1.27 8.10 -2.39 -0.02 1.25 16 34 H 0.14 2.53 7.54 -2.39 -0.02 2.52 16 35 H 0.09 2.01 7.88 -2.39 -0.02 1.99 16 36 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 2.10 5.92 -2.39 -0.01 2.08 16 38 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 3.26 6.18 -2.39 -0.01 3.24 16 40 H -0.01 -0.30 8.14 -2.38 -0.02 -0.31 16 41 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 44 H 0.10 2.41 7.91 -2.39 -0.02 2.40 16 45 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -67.42 370.50 1.61 -65.80 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.99 Total: 6.08 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: 7.15 Total: 24.81 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -8.38 Total: -104.48 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.17 Total: -38.41 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.42 1.61 -65.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781572476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.535 kcal (2) G-P(sol) polarization free energy of solvation -67.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds