Wall clock time and date at job start Tue Mar 31 2020 13:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47250 * 2 1 4 4 N 1.46498 * 109.47032 * 180.02562 * 3 2 1 5 5 C 1.34225 * 125.74257 * 124.99925 * 4 3 2 6 6 C 1.38131 * 107.40452 * 180.02562 * 5 4 3 7 7 C 1.47290 * 126.42185 * 180.02562 * 6 5 4 8 8 O 1.21520 * 119.99997 * 359.97438 * 7 6 5 9 9 O 1.34754 * 119.99727 * 179.97438 * 7 6 5 10 10 C 1.45197 * 116.99868 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47248 * 30.00579 * 10 9 7 12 12 C 1.52997 * 109.47259 * 269.99801 * 10 9 7 13 13 C 1.50703 * 109.46730 * 150.00488 * 10 9 7 14 14 O 1.21282 * 120.00225 * 16.02339 * 13 10 9 15 15 N 1.34777 * 119.99829 * 196.02702 * 13 10 9 16 16 C 1.46505 * 120.00206 * 5.36618 * 15 13 10 17 17 C 1.46503 * 120.00334 * 185.36127 * 15 13 10 18 18 C 1.50697 * 109.46681 * 89.99792 * 17 15 13 19 19 H 1.07997 * 120.00270 * 0.02562 * 18 17 15 20 20 C 1.37877 * 119.99699 * 180.02562 * 18 17 15 21 21 N 1.31519 * 120.00287 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00146 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46917 * 89.99681 * 22 20 18 24 24 H 1.48502 * 109.47349 * 209.99932 * 22 20 18 25 25 H 1.48504 * 109.47128 * 330.00060 * 22 20 18 26 26 C 1.41335 * 107.15029 * 359.97438 * 6 5 4 27 27 N 1.30435 * 108.01147 * 0.02562 * 26 6 5 28 28 H 1.08998 * 109.47023 * 300.00450 * 1 2 3 29 29 H 1.09002 * 109.46377 * 60.00093 * 1 2 3 30 30 H 1.08996 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47023 * 239.99550 * 2 1 3 32 32 H 1.09001 * 109.47226 * 119.99565 * 2 1 3 33 33 H 1.08998 * 109.47475 * 59.99827 * 3 2 1 34 34 H 1.09001 * 109.46650 * 299.99917 * 3 2 1 35 35 H 1.07995 * 126.29534 * 0.02562 * 5 4 3 36 36 H 1.08992 * 109.47656 * 306.13947 * 12 10 9 37 37 H 1.09010 * 109.46660 * 66.14264 * 12 10 9 38 38 H 1.09003 * 109.47140 * 186.13374 * 12 10 9 39 39 H 1.08994 * 109.46987 * 84.81457 * 16 15 13 40 40 H 1.08994 * 109.47240 * 204.82625 * 16 15 13 41 41 H 1.09005 * 109.46685 * 324.82220 * 16 15 13 42 42 H 1.09003 * 109.47066 * 210.00265 * 17 15 13 43 43 H 1.09006 * 109.46611 * 330.00155 * 17 15 13 44 44 H 0.96997 * 120.00431 * 180.02562 * 21 20 18 45 45 H 1.08000 * 125.99707 * 179.73025 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2888 2.0674 -0.8933 6 6 5.6001 1.8176 -0.5382 7 6 6.8028 2.3053 -1.2346 8 8 6.6914 2.9999 -2.2256 9 8 8.0266 1.9814 -0.7729 10 6 9.1668 2.4967 -1.5096 11 1 8.9013 3.4476 -1.9715 12 6 9.5667 1.4961 -2.5958 13 6 10.3234 2.7022 -0.5657 14 8 10.3116 2.1826 0.5301 15 7 11.3709 3.4636 -0.9392 16 6 11.3340 4.1862 -2.2131 17 6 12.5466 3.5687 -0.0714 18 6 13.5312 2.4844 -0.4261 19 1 13.3042 1.7871 -1.2190 20 6 14.7219 2.3826 0.2615 21 7 15.5815 1.4367 -0.0483 22 14 15.1143 3.5883 1.6334 23 1 14.6101 3.0518 2.9231 24 1 16.5844 3.7806 1.7180 25 1 14.4602 4.8910 1.3496 26 6 5.5713 1.0071 0.6193 27 7 4.3229 0.7907 0.9292 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6768 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9554 2.6571 -1.7344 36 1 9.7268 0.5163 -2.1461 37 1 8.7718 1.4295 -3.3388 38 1 10.4862 1.8299 -3.0765 39 1 10.8212 5.1382 -2.0760 40 1 12.3520 4.3680 -2.5574 41 1 10.8010 3.5899 -2.9537 42 1 13.0142 4.5436 -0.2095 43 1 12.2414 3.4561 0.9690 44 1 16.4190 1.3648 0.4357 45 1 6.4319 0.6290 1.1511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781696408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:37 Heat of formation + Delta-G solvation = -40.095533 kcal Electronic energy + Delta-G solvation = -26871.640795 eV Core-core repulsion = 22891.674528 eV Total energy + Delta-G solvation = -3979.966266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69189 -40.27997 -38.84407 -36.26062 -35.85813 -34.95595 -32.75742 -32.19739 -31.62540 -30.53546 -28.37237 -27.14522 -26.13856 -24.67197 -23.42447 -22.75136 -21.84942 -20.96347 -20.28607 -18.77366 -18.31561 -16.97824 -16.93713 -16.58486 -16.25595 -15.84791 -15.61008 -15.18600 -14.98189 -14.74513 -14.61741 -14.10657 -13.72908 -13.57346 -13.18480 -13.10408 -12.86383 -12.80405 -12.52182 -12.37379 -12.23327 -12.18116 -11.95624 -11.86195 -11.55844 -11.46978 -11.37170 -11.20704 -10.92766 -10.64769 -10.50261 -10.37847 -10.15281 -9.89795 -9.54866 -9.05773 -8.97240 -8.59152 -7.75505 -6.09207 -4.08543 1.12358 1.89147 1.90520 2.63474 3.11269 3.21315 3.30232 3.36197 3.38425 3.82675 3.99313 4.24867 4.36248 4.39727 4.52233 4.66175 4.76198 4.80299 4.85526 4.89716 5.04855 5.09611 5.15443 5.18533 5.24405 5.40236 5.44122 5.51622 5.53933 5.67624 5.76270 5.81865 5.83172 6.09647 6.19042 6.29150 6.43241 6.49292 6.68266 6.93062 7.24088 7.27668 7.59000 7.85230 8.14815 8.45113 8.85167 8.94363 9.50625 11.03887 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026288 B = 0.002279 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.876222 B =12282.380509 C =12752.220573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.129 3.871 4 N -0.360 5.360 5 C 0.135 3.865 6 C -0.278 4.278 7 C 0.544 3.456 8 O -0.525 6.525 9 O -0.321 6.321 10 C 0.075 3.925 11 H 0.103 0.897 12 C -0.165 4.165 13 C 0.513 3.487 14 O -0.519 6.519 15 N -0.593 5.593 16 C 0.074 3.926 17 C 0.216 3.784 18 C -0.532 4.532 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.108 3.892 27 N -0.298 5.298 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.191 0.809 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.039 0.961 44 H 0.265 0.735 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.478 2.098 -4.786 28.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.009 3.991 4 N -0.138 5.138 5 C -0.017 4.017 6 C -0.291 4.291 7 C 0.390 3.610 8 O -0.416 6.416 9 O -0.236 6.236 10 C 0.017 3.983 11 H 0.121 0.879 12 C -0.222 4.222 13 C 0.298 3.702 14 O -0.395 6.395 15 N -0.326 5.326 16 C -0.070 4.070 17 C 0.096 3.904 18 C -0.570 4.570 19 H 0.094 0.906 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.190 1.190 26 C -0.080 4.080 27 N -0.117 5.117 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.208 0.792 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -29.250 1.377 -3.594 29.502 hybrid contribution 1.044 1.046 -0.126 1.483 sum -28.206 2.423 -3.719 28.553 Atomic orbital electron populations 1.21713 0.94193 1.02728 1.02195 1.21817 0.96569 0.95029 1.04152 1.21981 0.73126 0.99606 1.04436 1.48664 1.07122 1.37631 1.20363 1.22938 0.89752 0.94737 0.94278 1.19302 0.90792 1.14924 1.04047 1.20009 0.83076 0.76534 0.81405 1.90799 1.87407 1.37302 1.26054 1.86663 1.13636 1.68876 1.54449 1.22593 0.83803 0.99699 0.92252 0.87898 1.22167 1.02873 1.00008 0.97177 1.19798 0.83104 0.79887 0.87436 1.90688 1.79250 1.47724 1.21803 1.47735 1.17389 1.46327 1.21171 1.21859 1.03689 0.95716 0.85752 1.19734 0.82316 0.97540 0.90836 1.21325 1.01018 1.14323 1.20344 0.90617 1.24852 0.95939 0.95398 0.96775 1.69893 1.09522 1.32519 1.41488 0.86851 0.77601 0.82001 0.83247 1.19837 1.21062 1.19037 1.24386 0.95288 0.94260 0.94018 1.77252 1.01791 1.19380 1.13266 0.92193 0.92345 0.91771 0.91193 0.90067 0.89067 0.88182 0.79241 0.90518 0.91187 0.89461 0.93321 0.89939 0.91869 0.94893 0.94275 0.92523 0.78140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 9.91 37.16 0.37 -0.13 16 2 C -0.14 -0.70 6.11 -26.73 -0.16 -0.86 16 3 C 0.13 0.65 6.49 -4.04 -0.03 0.62 16 4 N -0.36 -3.24 3.65 -60.79 -0.22 -3.46 16 5 C 0.13 1.27 11.25 -16.54 -0.19 1.09 16 6 C -0.28 -3.48 6.13 -105.08 -0.64 -4.12 16 7 C 0.54 8.17 7.93 34.41 0.27 8.45 16 8 O -0.53 -8.34 16.16 -19.28 -0.31 -8.65 16 9 O -0.32 -5.48 9.31 -47.16 -0.44 -5.92 16 10 C 0.08 1.27 2.14 -27.88 -0.06 1.21 16 11 H 0.10 1.58 6.32 -51.93 -0.33 1.25 16 12 C -0.16 -2.44 9.19 37.16 0.34 -2.10 16 13 C 0.51 10.91 6.95 -10.98 -0.08 10.83 16 14 O -0.52 -13.19 16.13 -13.54 -0.22 -13.41 16 15 N -0.59 -12.35 2.86 -182.95 -0.52 -12.87 16 16 C 0.07 1.13 9.79 59.85 0.59 1.72 16 17 C 0.22 5.29 4.25 -5.19 -0.02 5.27 16 18 C -0.53 -15.15 9.94 -34.44 -0.34 -15.50 16 19 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 22 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 26 C 0.11 1.33 11.87 -16.97 -0.20 1.12 16 27 N -0.30 -3.47 12.33 30.87 0.38 -3.09 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.24 8.06 -51.93 -0.42 -0.18 16 35 H 0.19 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.09 1.24 6.33 -51.93 -0.33 0.91 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 41 H 0.06 0.83 4.92 -51.93 -0.26 0.58 16 42 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 43 H 0.04 1.03 6.78 -51.93 -0.35 0.67 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.20 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -36.88 383.36 -6.41 -43.29 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.71 Total: -1.48 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.25 Total: 9.62 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.41 Total: -46.11 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.97 Total: -27.97 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.88 -6.41 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781696408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.199 kcal (2) G-P(sol) polarization free energy of solvation -36.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds