Wall clock time and date at job start Tue Mar 31 2020 14:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47118 * 2 1 4 4 N 1.46499 * 109.47372 * 120.00143 * 2 1 3 5 5 C 1.34221 * 125.74450 * 274.99816 * 4 2 1 6 6 C 1.38123 * 107.41054 * 179.97438 * 5 4 2 7 7 C 1.47283 * 126.42447 * 179.97438 * 6 5 4 8 8 O 1.21516 * 120.00753 * 0.02562 * 7 6 5 9 9 O 1.34761 * 119.99695 * 180.02562 * 7 6 5 10 10 C 1.45199 * 116.99985 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47381 * 29.99718 * 10 9 7 12 12 C 1.52995 * 109.46883 * 269.99774 * 10 9 7 13 13 C 1.50704 * 109.47209 * 149.99933 * 10 9 7 14 14 O 1.21280 * 119.99905 * 16.02551 * 13 10 9 15 15 N 1.34773 * 119.99878 * 196.02578 * 13 10 9 16 16 C 1.46500 * 120.00249 * 5.36586 * 15 13 10 17 17 C 1.46502 * 120.00058 * 185.36269 * 15 13 10 18 18 C 1.50696 * 109.47152 * 89.99574 * 17 15 13 19 19 H 1.08004 * 120.00023 * 0.02562 * 18 17 15 20 20 C 1.37882 * 120.00218 * 180.02562 * 18 17 15 21 21 N 1.31515 * 119.99646 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00132 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47057 * 60.00131 * 22 20 18 24 24 H 1.48500 * 109.47331 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47070 * 300.00302 * 22 20 18 26 26 C 1.41345 * 107.14314 * 0.02562 * 6 5 4 27 27 N 1.30426 * 108.01660 * 359.73888 * 26 6 5 28 28 H 1.09001 * 109.47078 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47368 * 60.00051 * 1 2 3 30 30 H 1.09004 * 109.47061 * 299.99392 * 1 2 3 31 31 H 1.09008 * 109.46751 * 240.00196 * 2 1 3 32 32 H 1.08997 * 109.47401 * 59.99961 * 3 2 1 33 33 H 1.09000 * 109.47170 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46869 * 300.00413 * 3 2 1 35 35 H 1.08001 * 126.29319 * 359.95972 * 5 4 2 36 36 H 1.09004 * 109.47262 * 66.14074 * 12 10 9 37 37 H 1.09002 * 109.47131 * 186.13650 * 12 10 9 38 38 H 1.09003 * 109.47188 * 306.13531 * 12 10 9 39 39 H 1.08998 * 109.46902 * 84.81903 * 16 15 13 40 40 H 1.08998 * 109.47087 * 204.82081 * 16 15 13 41 41 H 1.08998 * 109.46683 * 324.82289 * 16 15 13 42 42 H 1.08995 * 109.47499 * 210.00379 * 17 15 13 43 43 H 1.09006 * 109.46957 * 330.00308 * 17 15 13 44 44 H 0.96996 * 119.99739 * 179.97438 * 21 20 18 45 45 H 1.07998 * 125.98860 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1903 -0.1362 2.4063 6 6 2.6625 -1.1230 3.2496 7 6 2.9940 -0.9691 4.6764 8 8 2.8580 0.1096 5.2190 9 8 3.4482 -2.0248 5.3802 10 6 3.7543 -1.8002 6.7817 11 1 3.1074 -1.0155 7.1737 12 6 5.2167 -1.3730 6.9221 13 6 3.5262 -3.0729 7.5559 14 8 3.4298 -4.1302 6.9698 15 7 3.4294 -3.0360 8.8997 16 6 3.4279 -1.7486 9.5989 17 6 3.3256 -4.2832 9.6611 18 6 4.7060 -4.7656 10.0257 19 1 5.5738 -4.1995 9.7210 20 6 4.8611 -5.9297 10.7482 21 7 3.8043 -6.6193 11.1187 22 14 6.5721 -6.5272 11.2006 23 1 7.2531 -5.4985 12.0272 24 1 6.4669 -7.7915 11.9723 25 1 7.3564 -6.7661 9.9624 26 6 2.7690 -2.3077 2.4861 27 7 2.3792 -2.0406 1.2705 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.9954 0.8923 2.6719 36 1 5.3570 -0.3983 6.4547 37 1 5.4770 -1.3100 7.9787 38 1 5.8580 -2.1063 6.4330 39 1 2.4152 -1.3459 9.6165 40 1 3.7806 -1.8897 10.6206 41 1 4.0867 -1.0525 9.0799 42 1 2.7503 -4.1073 10.5700 43 1 2.8252 -5.0385 9.0549 44 1 3.9135 -7.4384 11.6266 45 1 3.1088 -3.2671 2.8473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787809521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:38 Heat of formation + Delta-G solvation = -41.120825 kcal Electronic energy + Delta-G solvation = -27144.855357 eV Core-core repulsion = 23164.844631 eV Total energy + Delta-G solvation = -3980.010726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.73001 -40.23822 -38.74187 -36.31729 -36.12070 -34.83046 -32.79888 -31.66964 -30.79101 -30.36727 -27.93713 -27.75098 -26.03335 -25.10218 -23.96480 -22.72752 -22.09765 -20.61752 -20.18115 -18.75629 -18.26262 -16.89974 -16.54800 -16.39051 -16.06091 -15.65714 -15.52891 -15.15408 -14.99987 -14.61737 -14.42421 -14.24038 -13.59811 -13.38914 -13.19171 -13.10912 -12.82058 -12.79950 -12.69563 -12.28716 -12.10826 -12.02476 -11.99087 -11.80540 -11.68171 -11.38077 -11.26803 -11.20225 -10.90662 -10.63175 -10.51169 -10.35293 -10.15646 -9.86881 -9.65072 -9.02804 -8.84988 -8.42986 -7.67904 -6.04053 -4.09310 1.16218 1.89753 1.93421 2.68243 3.15294 3.29946 3.32991 3.37352 3.41663 3.87854 4.02791 4.24738 4.36120 4.44111 4.44729 4.61844 4.83356 4.87280 4.92746 4.96028 5.06832 5.12814 5.16379 5.19819 5.24409 5.30386 5.44921 5.46816 5.55301 5.59738 5.77354 5.84442 5.90922 6.13778 6.22439 6.29785 6.49000 6.54644 7.02904 7.29085 7.43503 7.50571 7.88654 7.93023 8.22121 8.33992 8.87210 9.02757 9.55624 11.03995 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.002365 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.864996 B =11836.516732 C =12149.251859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 C -0.169 4.169 4 N -0.355 5.355 5 C 0.136 3.864 6 C -0.278 4.278 7 C 0.544 3.456 8 O -0.526 6.526 9 O -0.321 6.321 10 C 0.073 3.927 11 H 0.102 0.898 12 C -0.164 4.164 13 C 0.510 3.490 14 O -0.520 6.520 15 N -0.597 5.597 16 C 0.074 3.926 17 C 0.246 3.754 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.108 3.892 27 N -0.300 5.300 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.188 0.812 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.035 0.965 43 H 0.046 0.954 44 H 0.264 0.736 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.548 18.887 -19.944 27.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.133 5.133 5 C -0.016 4.016 6 C -0.291 4.291 7 C 0.389 3.611 8 O -0.416 6.416 9 O -0.236 6.236 10 C 0.015 3.985 11 H 0.120 0.880 12 C -0.222 4.222 13 C 0.295 3.705 14 O -0.395 6.395 15 N -0.331 5.331 16 C -0.070 4.070 17 C 0.127 3.873 18 C -0.568 4.568 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.080 4.080 27 N -0.119 5.119 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.205 0.795 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.939 18.014 -21.274 28.310 hybrid contribution 1.069 0.105 1.367 1.739 sum -3.870 18.119 -19.907 27.195 Atomic orbital electron populations 1.22268 0.93062 1.03748 1.03448 1.21445 0.95234 0.92909 0.85445 1.22259 1.02627 0.93685 1.04125 1.48837 1.48394 1.07747 1.08349 1.22808 0.94819 0.99314 0.84658 1.19300 1.21414 0.95580 0.92772 1.20016 0.72955 0.81881 0.86200 1.90793 1.52069 1.27514 1.71260 1.86667 1.75520 1.38118 1.23295 1.22634 0.98895 0.98260 0.78753 0.87989 1.22160 0.93665 1.02243 1.04097 1.19775 0.78614 0.89198 0.82944 1.90690 1.48981 1.31374 1.68502 1.48070 1.71139 1.09005 1.04884 1.21828 1.00481 0.85535 0.99164 1.19353 0.97552 0.79748 0.90624 1.21393 0.92491 1.08281 1.34631 0.92402 1.24941 0.97149 0.96225 0.95779 1.69924 1.28883 1.16270 1.38176 0.86545 0.84262 0.78016 0.78520 1.20238 1.21181 1.20125 1.24373 0.94861 0.99344 0.89402 1.77276 1.21492 0.92269 1.20822 0.91270 0.90085 0.91626 0.87331 0.91199 0.91168 0.89534 0.79492 0.91268 0.89577 0.90655 0.93456 0.90137 0.92217 0.94678 0.93570 0.92614 0.78157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 9.52 37.16 0.35 -0.44 16 2 C 0.15 0.85 3.91 -67.93 -0.27 0.58 16 3 C -0.17 -0.59 8.82 37.16 0.33 -0.26 16 4 N -0.35 -3.35 3.50 -54.30 -0.19 -3.54 16 5 C 0.14 1.36 10.39 -16.55 -0.17 1.19 16 6 C -0.28 -3.61 6.13 -105.08 -0.64 -4.25 16 7 C 0.54 8.40 7.93 34.41 0.27 8.68 16 8 O -0.53 -8.55 16.16 -19.28 -0.31 -8.87 16 9 O -0.32 -5.61 9.31 -47.18 -0.44 -6.05 16 10 C 0.07 1.27 2.14 -27.88 -0.06 1.21 16 11 H 0.10 1.62 6.32 -51.93 -0.33 1.29 16 12 C -0.16 -2.42 9.19 37.15 0.34 -2.08 16 13 C 0.51 11.15 6.95 -10.99 -0.08 11.08 16 14 O -0.52 -13.62 16.13 -13.54 -0.22 -13.84 16 15 N -0.60 -12.90 2.86 -182.96 -0.52 -13.42 16 16 C 0.07 1.19 9.79 59.85 0.59 1.77 16 17 C 0.25 6.47 5.18 -5.19 -0.03 6.44 16 18 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 19 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 22 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.11 1.37 11.87 -16.97 -0.20 1.17 16 27 N -0.30 -3.65 12.50 30.87 0.39 -3.26 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.07 0.22 7.13 -51.93 -0.37 -0.15 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.19 1.36 7.23 -52.49 -0.38 0.98 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.20 6.33 -51.93 -0.33 0.87 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 41 H 0.06 0.80 4.92 -51.93 -0.26 0.55 16 42 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 43 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.20 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -36.13 384.10 -6.43 -42.56 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.65 Total: -1.81 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 0.02 Total: 11.49 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.41 Total: -46.05 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.97 Total: -28.76 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.13 -6.43 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787809521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.443 kcal (2) G-P(sol) polarization free energy of solvation -36.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds