Wall clock time and date at job start Tue Mar 31 2020 14:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47470 * 2 1 4 4 N 1.46498 * 109.47252 * 120.00193 * 2 1 3 5 5 C 1.34233 * 125.73941 * 275.31782 * 4 2 1 6 6 C 1.38128 * 107.40399 * 180.17429 * 5 4 2 7 7 C 1.47285 * 126.42661 * 179.83401 * 6 5 4 8 8 O 1.21528 * 119.99534 * 359.71761 * 7 6 5 9 9 O 1.34750 * 120.00163 * 179.71880 * 7 6 5 10 10 C 1.45200 * 116.99841 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47237 * 329.99595 * 10 9 7 12 12 C 1.53005 * 109.47499 * 89.99984 * 10 9 7 13 13 C 1.50706 * 109.47184 * 209.99677 * 10 9 7 14 14 O 1.21283 * 119.99503 * 354.99895 * 13 10 9 15 15 N 1.34773 * 120.00081 * 174.72622 * 13 10 9 16 16 C 1.46492 * 120.00231 * 359.97438 * 15 13 10 17 17 C 1.46506 * 119.99968 * 180.02562 * 15 13 10 18 18 C 1.50699 * 109.47352 * 89.99400 * 17 15 13 19 19 H 1.08000 * 119.99828 * 0.02562 * 18 17 15 20 20 C 1.37870 * 120.00146 * 179.97438 * 18 17 15 21 21 N 1.31516 * 119.99841 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00215 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46988 * 90.00142 * 22 20 18 24 24 H 1.48502 * 109.47218 * 209.99962 * 22 20 18 25 25 H 1.48501 * 109.47118 * 330.00116 * 22 20 18 26 26 C 1.41349 * 107.14795 * 359.57757 * 6 5 4 27 27 N 1.30431 * 108.01234 * 0.25776 * 26 6 5 28 28 H 1.09002 * 109.46826 * 300.00170 * 1 2 3 29 29 H 1.08997 * 109.46957 * 60.00273 * 1 2 3 30 30 H 1.08996 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47516 * 239.99868 * 2 1 3 32 32 H 1.09005 * 109.46855 * 300.00179 * 3 2 1 33 33 H 1.08992 * 109.47170 * 59.99883 * 3 2 1 34 34 H 1.09001 * 109.47377 * 180.02562 * 3 2 1 35 35 H 1.07994 * 126.29991 * 0.04504 * 5 4 2 36 36 H 1.08999 * 109.47302 * 180.02562 * 12 10 9 37 37 H 1.09002 * 109.46726 * 299.99889 * 12 10 9 38 38 H 1.08996 * 109.46859 * 59.99551 * 12 10 9 39 39 H 1.09001 * 109.47443 * 89.99785 * 16 15 13 40 40 H 1.08999 * 109.47479 * 210.00762 * 16 15 13 41 41 H 1.09006 * 109.47080 * 330.00171 * 16 15 13 42 42 H 1.08995 * 109.47161 * 210.00105 * 17 15 13 43 43 H 1.09002 * 109.46900 * 329.99415 * 17 15 13 44 44 H 0.97007 * 120.00044 * 180.02562 * 21 20 18 45 45 H 1.08003 * 125.98965 * 180.26356 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1845 -0.1376 2.4079 6 6 2.6633 -1.1227 3.2495 7 6 2.9947 -0.9690 4.6763 8 8 2.8575 0.1097 5.2191 9 8 3.4499 -2.0242 5.3798 10 6 3.7558 -1.7997 6.7814 11 1 4.0730 -0.7665 6.9230 12 6 2.5087 -2.0706 7.6254 13 6 4.8631 -2.7282 7.2089 14 8 5.2846 -3.5645 6.4383 15 7 5.3887 -2.6257 8.4457 16 6 4.8840 -1.6112 9.3743 17 6 6.4655 -3.5280 8.8612 18 6 7.7974 -2.9123 8.5177 19 1 7.8378 -1.9453 8.0383 20 6 8.9644 -3.5828 8.8164 21 7 8.9153 -4.7601 9.4006 22 14 10.6154 -2.8193 8.3913 23 1 11.0887 -1.9961 9.5331 24 1 11.6014 -3.8946 8.1142 25 1 10.4687 -1.9603 7.1889 26 6 2.7700 -2.3075 2.4860 27 7 2.3846 -2.0392 1.2692 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.9831 0.8892 2.6751 36 1 2.7382 -1.9015 8.6775 37 1 1.7078 -1.3990 7.3162 38 1 2.1915 -3.1037 7.4837 39 1 4.0619 -2.0281 9.9562 40 1 5.6850 -1.3029 10.0461 41 1 4.5294 -0.7477 8.8114 42 1 6.4075 -3.6917 9.9372 43 1 6.3613 -4.4810 8.3426 44 1 9.7364 -5.2318 9.6112 45 1 3.1108 -3.2666 2.8470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787809523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:41 Heat of formation + Delta-G solvation = -39.625243 kcal Electronic energy + Delta-G solvation = -27190.684803 eV Core-core repulsion = 23210.738930 eV Total energy + Delta-G solvation = -3979.945873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70871 -40.23331 -38.74859 -36.30050 -36.10173 -34.86335 -32.85228 -31.63776 -30.77172 -30.35722 -27.92396 -27.67144 -26.13058 -25.07562 -23.97115 -22.71196 -22.08997 -20.61389 -20.16506 -18.78356 -18.26367 -16.89783 -16.51187 -16.39640 -16.03799 -15.61984 -15.55810 -15.15463 -15.05289 -14.54849 -14.52001 -14.06731 -13.57355 -13.34475 -13.24827 -13.20369 -12.86260 -12.76242 -12.70904 -12.33124 -12.13045 -12.04676 -11.96271 -11.80892 -11.62396 -11.36585 -11.26632 -11.16950 -10.88947 -10.62550 -10.52201 -10.33376 -10.14601 -9.84837 -9.62268 -9.00771 -8.84317 -8.42631 -7.68667 -6.03569 -4.08252 1.18309 1.91706 1.95172 2.69428 3.17244 3.31448 3.33433 3.38709 3.44513 3.88784 4.02333 4.26390 4.38061 4.45761 4.46270 4.62951 4.83413 4.88390 4.92457 4.96980 5.06964 5.09660 5.17139 5.17651 5.26660 5.31093 5.42055 5.49053 5.54662 5.63564 5.73825 5.74996 5.90605 6.06313 6.24029 6.26281 6.50917 6.55672 7.02244 7.30916 7.42284 7.50355 7.90224 7.94012 8.22940 8.33759 8.88487 9.03662 9.56743 11.04541 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.002598 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.147838 B =10773.233079 C =11490.347162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 C -0.169 4.169 4 N -0.355 5.355 5 C 0.136 3.864 6 C -0.277 4.277 7 C 0.545 3.455 8 O -0.526 6.526 9 O -0.320 6.320 10 C 0.072 3.928 11 H 0.106 0.894 12 C -0.169 4.169 13 C 0.509 3.491 14 O -0.519 6.519 15 N -0.597 5.597 16 C 0.076 3.924 17 C 0.247 3.753 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.108 3.892 27 N -0.300 5.300 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.188 0.812 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.263 0.737 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.285 12.485 -14.313 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.133 5.133 5 C -0.016 4.016 6 C -0.290 4.290 7 C 0.390 3.610 8 O -0.416 6.416 9 O -0.235 6.235 10 C 0.014 3.986 11 H 0.123 0.877 12 C -0.226 4.226 13 C 0.293 3.707 14 O -0.394 6.394 15 N -0.330 5.330 16 C -0.067 4.067 17 C 0.128 3.872 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.080 4.080 27 N -0.119 5.119 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.127 0.873 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.205 0.795 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -19.190 11.752 -15.787 27.488 hybrid contribution 1.140 0.897 0.841 1.676 sum -18.050 12.649 -14.946 26.630 Atomic orbital electron populations 1.22262 0.93099 1.03654 1.03425 1.21444 0.95166 0.92954 0.85479 1.22263 1.02746 0.93656 1.04085 1.48831 1.48377 1.07885 1.08238 1.22810 0.94846 0.99273 0.84661 1.19297 1.21209 0.95658 0.92846 1.20006 0.73140 0.81766 0.86079 1.90798 1.51845 1.27562 1.71426 1.86646 1.75439 1.37968 1.23456 1.22602 0.96241 1.01402 0.78389 0.87683 1.22269 0.96222 1.03526 1.00622 1.19782 0.82980 0.85028 0.82909 1.90702 1.61155 1.36264 1.51296 1.48061 1.37455 1.35439 1.12074 1.21837 0.99689 0.91075 0.94145 1.19342 0.82860 0.89368 0.95611 1.21429 0.90665 1.04810 1.39715 0.92425 1.24930 0.99289 0.94825 0.95045 1.69933 1.28229 1.13382 1.41797 0.86487 0.83274 0.78869 0.78752 1.20634 1.21058 1.19869 1.24363 0.94797 0.99388 0.89403 1.77271 1.21572 0.92351 1.20686 0.91660 0.90097 0.91324 0.87313 0.89543 0.91213 0.91101 0.79493 0.89410 0.91312 0.90986 0.93159 0.90355 0.92318 0.94638 0.93636 0.92690 0.78178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 9.52 37.16 0.35 -0.42 16 2 C 0.15 0.89 3.91 -67.93 -0.27 0.63 16 3 C -0.17 -0.68 8.83 37.16 0.33 -0.35 16 4 N -0.35 -3.46 3.49 -54.30 -0.19 -3.65 16 5 C 0.14 1.41 10.40 -16.54 -0.17 1.24 16 6 C -0.28 -3.70 6.13 -105.08 -0.64 -4.35 16 7 C 0.54 8.63 7.93 34.41 0.27 8.90 16 8 O -0.53 -8.80 16.16 -19.29 -0.31 -9.11 16 9 O -0.32 -5.65 9.27 -47.29 -0.44 -6.09 16 10 C 0.07 1.24 2.17 -27.88 -0.06 1.18 16 11 H 0.11 1.74 6.13 -51.93 -0.32 1.42 16 12 C -0.17 -2.27 9.28 37.16 0.34 -1.93 16 13 C 0.51 11.10 7.10 -10.98 -0.08 11.02 16 14 O -0.52 -13.65 16.09 -14.05 -0.23 -13.87 16 15 N -0.60 -12.81 2.86 -182.95 -0.52 -13.33 16 16 C 0.08 1.21 8.93 59.84 0.53 1.74 16 17 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 18 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 19 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 22 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.11 1.40 11.87 -16.96 -0.20 1.20 16 27 N -0.30 -3.73 12.50 30.87 0.39 -3.34 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.25 7.13 -51.93 -0.37 -0.12 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.19 1.43 7.24 -52.49 -0.38 1.05 16 36 H 0.09 1.03 5.15 -51.93 -0.27 0.77 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.66 7.03 -51.93 -0.36 0.29 16 40 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 41 H 0.06 0.79 6.08 -51.93 -0.32 0.47 16 42 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 43 H 0.05 1.34 7.43 -51.93 -0.39 0.96 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.20 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -36.65 382.21 -6.45 -43.10 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.59 Total: -2.17 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -0.03 Total: 11.57 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.41 Total: -46.27 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.98 Total: -29.08 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.65 -6.45 -43.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787809523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.476 kcal (2) G-P(sol) polarization free energy of solvation -36.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds