Wall clock time and date at job start Tue Mar 31 2020 14:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47470 * 2 1 4 4 N 1.46498 * 109.47252 * 120.00193 * 2 1 3 5 5 C 1.34233 * 125.73941 * 275.31782 * 4 2 1 6 6 C 1.38128 * 107.40399 * 180.17429 * 5 4 2 7 7 C 1.47285 * 126.42661 * 179.83401 * 6 5 4 8 8 O 1.21528 * 119.99534 * 359.71761 * 7 6 5 9 9 O 1.34750 * 120.00163 * 179.71880 * 7 6 5 10 10 C 1.45200 * 116.99841 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47237 * 329.99595 * 10 9 7 12 12 C 1.53005 * 109.47499 * 89.99984 * 10 9 7 13 13 C 1.50706 * 109.47184 * 209.99677 * 10 9 7 14 14 O 1.21283 * 119.99503 * 354.99895 * 13 10 9 15 15 N 1.34773 * 120.00081 * 174.72622 * 13 10 9 16 16 C 1.46492 * 120.00231 * 359.97438 * 15 13 10 17 17 C 1.46506 * 119.99968 * 180.02562 * 15 13 10 18 18 C 1.50699 * 109.47352 * 89.99400 * 17 15 13 19 19 H 1.08000 * 119.99828 * 0.02562 * 18 17 15 20 20 C 1.37870 * 120.00146 * 179.97438 * 18 17 15 21 21 N 1.31516 * 119.99841 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00215 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46988 * 90.00142 * 22 20 18 24 24 H 1.48502 * 109.47218 * 209.99962 * 22 20 18 25 25 H 1.48501 * 109.47118 * 330.00116 * 22 20 18 26 26 C 1.41349 * 107.14795 * 359.57757 * 6 5 4 27 27 N 1.30431 * 108.01234 * 0.25776 * 26 6 5 28 28 H 1.09002 * 109.46826 * 300.00170 * 1 2 3 29 29 H 1.08997 * 109.46957 * 60.00273 * 1 2 3 30 30 H 1.08996 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47516 * 239.99868 * 2 1 3 32 32 H 1.09005 * 109.46855 * 300.00179 * 3 2 1 33 33 H 1.08992 * 109.47170 * 59.99883 * 3 2 1 34 34 H 1.09001 * 109.47377 * 180.02562 * 3 2 1 35 35 H 1.07994 * 126.29991 * 0.04504 * 5 4 2 36 36 H 1.08999 * 109.47302 * 180.02562 * 12 10 9 37 37 H 1.09002 * 109.46726 * 299.99889 * 12 10 9 38 38 H 1.08996 * 109.46859 * 59.99551 * 12 10 9 39 39 H 1.09001 * 109.47443 * 89.99785 * 16 15 13 40 40 H 1.08999 * 109.47479 * 210.00762 * 16 15 13 41 41 H 1.09006 * 109.47080 * 330.00171 * 16 15 13 42 42 H 1.08995 * 109.47161 * 210.00105 * 17 15 13 43 43 H 1.09002 * 109.46900 * 329.99415 * 17 15 13 44 44 H 0.97007 * 120.00044 * 180.02562 * 21 20 18 45 45 H 1.08003 * 125.98965 * 180.26356 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1845 -0.1376 2.4079 6 6 2.6633 -1.1227 3.2495 7 6 2.9947 -0.9690 4.6763 8 8 2.8575 0.1097 5.2191 9 8 3.4499 -2.0242 5.3798 10 6 3.7558 -1.7997 6.7814 11 1 4.0730 -0.7665 6.9230 12 6 2.5087 -2.0706 7.6254 13 6 4.8631 -2.7282 7.2089 14 8 5.2846 -3.5645 6.4383 15 7 5.3887 -2.6257 8.4457 16 6 4.8840 -1.6112 9.3743 17 6 6.4655 -3.5280 8.8612 18 6 7.7974 -2.9123 8.5177 19 1 7.8378 -1.9453 8.0383 20 6 8.9644 -3.5828 8.8164 21 7 8.9153 -4.7601 9.4006 22 14 10.6154 -2.8193 8.3913 23 1 11.0887 -1.9961 9.5331 24 1 11.6014 -3.8946 8.1142 25 1 10.4687 -1.9603 7.1889 26 6 2.7700 -2.3075 2.4860 27 7 2.3846 -2.0392 1.2692 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.9831 0.8892 2.6751 36 1 2.7382 -1.9015 8.6775 37 1 1.7078 -1.3990 7.3162 38 1 2.1915 -3.1037 7.4837 39 1 4.0619 -2.0281 9.9562 40 1 5.6850 -1.3029 10.0461 41 1 4.5294 -0.7477 8.8114 42 1 6.4075 -3.6917 9.9372 43 1 6.3613 -4.4810 8.3426 44 1 9.7364 -5.2318 9.6112 45 1 3.1108 -3.2666 2.8470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787809523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:40 Heat of formation + Delta-G solvation = -62.956028 kcal Electronic energy + Delta-G solvation = -27191.696502 eV Core-core repulsion = 23210.738930 eV Total energy + Delta-G solvation = -3980.957572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.61157 -41.57340 -40.32715 -37.50172 -36.79610 -36.67320 -34.88990 -33.07010 -31.62075 -31.26083 -29.57917 -28.25628 -27.63658 -26.26273 -25.48839 -23.94663 -23.30906 -21.64753 -20.99267 -20.36956 -19.30339 -18.68850 -18.16285 -17.75297 -17.25120 -17.07718 -16.57115 -16.41676 -16.21776 -15.94146 -15.69256 -15.10898 -14.78569 -14.68509 -14.30790 -14.12887 -14.01282 -13.85225 -13.62598 -13.49338 -13.30783 -13.22859 -13.10641 -13.01501 -12.81338 -12.58552 -12.50298 -12.48344 -12.38404 -12.21762 -12.04031 -11.87241 -11.71518 -11.46918 -10.69493 -10.64284 -10.59100 -9.92867 -9.50053 -8.23407 -6.37781 0.24761 0.93924 1.10355 1.36037 1.39336 1.48085 1.52683 1.65303 2.08719 2.34020 2.47555 3.06442 3.35023 3.44124 3.63222 3.70834 3.82605 3.88631 3.89492 3.92752 4.06312 4.27891 4.34563 4.45022 4.61431 4.62512 4.65897 4.69680 4.74173 4.79033 4.86811 4.91111 4.97256 5.12418 5.14416 5.20173 5.20797 5.28102 5.37082 5.52441 5.79086 5.79696 6.04214 6.39074 6.57732 6.70921 6.73942 7.22191 7.37141 8.83839 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.002598 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.147838 B =10773.233079 C =11490.347162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 C -0.165 4.165 4 N -0.345 5.345 5 C 0.157 3.843 6 C -0.308 4.308 7 C 0.545 3.455 8 O -0.538 6.538 9 O -0.340 6.340 10 C 0.081 3.919 11 H 0.116 0.884 12 C -0.160 4.160 13 C 0.500 3.500 14 O -0.578 6.578 15 N -0.600 5.600 16 C 0.068 3.932 17 C 0.260 3.740 18 C -0.545 4.545 19 H 0.051 0.949 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.967 3.033 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.276 1.276 26 C 0.098 3.902 27 N -0.320 5.320 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.219 0.781 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.034 0.966 43 H 0.001 0.999 44 H 0.268 0.732 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.463 15.471 -14.903 29.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 C -0.223 4.223 4 N -0.123 5.123 5 C 0.003 3.997 6 C -0.321 4.321 7 C 0.392 3.608 8 O -0.429 6.429 9 O -0.256 6.256 10 C 0.023 3.977 11 H 0.134 0.866 12 C -0.217 4.217 13 C 0.286 3.714 14 O -0.458 6.458 15 N -0.332 5.332 16 C -0.073 4.073 17 C 0.139 3.861 18 C -0.584 4.584 19 H 0.069 0.931 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.791 3.209 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.201 1.201 26 C -0.089 4.089 27 N -0.139 5.139 28 H 0.086 0.914 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.235 0.765 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.077 0.923 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -20.407 14.773 -16.367 30.043 hybrid contribution 1.437 -0.011 0.931 1.713 sum -18.969 14.762 -15.436 28.566 Atomic orbital electron populations 1.22246 0.91737 1.02991 1.04896 1.21897 0.96202 0.93844 0.83988 1.22287 1.02023 0.92206 1.05796 1.49256 1.46840 1.07007 1.09190 1.23209 0.92651 0.99810 0.84079 1.19354 1.23801 0.96871 0.92093 1.20313 0.72627 0.81134 0.86677 1.90769 1.52775 1.27605 1.71780 1.86650 1.75912 1.39219 1.23810 1.22528 0.96059 0.99980 0.79127 0.86649 1.22278 0.94701 1.03766 1.00995 1.20665 0.83501 0.84923 0.82265 1.90662 1.63244 1.38918 1.52968 1.48046 1.36290 1.35710 1.13160 1.22195 1.00596 0.90770 0.93766 1.18842 0.83968 0.88584 0.94671 1.21681 0.92059 1.04737 1.39917 0.93089 1.25832 1.03196 0.95260 0.94738 1.70042 1.29464 1.14564 1.42468 0.85428 0.78490 0.78147 0.78817 1.18590 1.20518 1.20099 1.24384 0.95170 0.99581 0.89764 1.77217 1.22063 0.94190 1.20389 0.91383 0.87420 0.93030 0.87150 0.87013 0.90359 0.92215 0.76475 0.87331 0.89338 0.91481 0.89679 0.90667 0.89422 0.94799 0.98111 0.92312 0.78549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.52 71.98 0.69 -0.41 16 2 C 0.14 1.36 3.91 44.99 0.18 1.53 16 3 C -0.17 -0.83 8.83 71.98 0.64 -0.20 16 4 N -0.35 -6.28 3.49 -325.70 -1.14 -7.41 16 5 C 0.16 2.98 10.40 84.30 0.88 3.86 16 6 C -0.31 -8.16 6.13 -20.16 -0.12 -8.28 16 7 C 0.55 17.09 7.93 70.20 0.56 17.65 16 8 O -0.54 -17.24 16.16 19.75 0.32 -16.92 16 9 O -0.34 -12.18 9.27 -50.23 -0.47 -12.65 16 10 C 0.08 2.75 2.17 29.85 0.06 2.81 16 11 H 0.12 3.65 6.13 -2.39 -0.01 3.64 16 12 C -0.16 -3.99 9.28 71.98 0.67 -3.32 16 13 C 0.50 22.32 7.10 87.66 0.62 22.95 16 14 O -0.58 -32.10 16.09 15.71 0.25 -31.85 16 15 N -0.60 -26.02 2.86 -851.13 -2.43 -28.45 16 16 C 0.07 2.03 8.93 127.77 1.14 3.17 16 17 C 0.26 14.18 5.16 85.63 0.44 14.62 16 18 C -0.55 -31.97 9.39 25.60 0.24 -31.73 16 19 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 20 C 0.01 0.52 5.46 84.65 0.46 0.99 16 21 N -0.93 -56.31 13.29 21.44 0.28 -56.02 16 22 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 C 0.10 2.62 11.87 85.67 1.02 3.64 16 27 N -0.32 -7.93 12.50 -56.24 -0.70 -8.63 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 33 H 0.08 0.29 7.13 -2.39 -0.02 0.27 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.22 2.67 7.24 -2.91 -0.02 2.64 16 36 H 0.11 2.21 5.15 -2.39 -0.01 2.19 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 1.96 7.03 -2.39 -0.02 1.94 16 40 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 41 H 0.09 2.11 6.08 -2.38 -0.01 2.09 16 42 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 43 H 0.00 0.05 7.43 -2.39 -0.02 0.03 16 44 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 45 H 0.20 5.11 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -83.22 382.21 6.60 -76.61 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.00 Total: 10.40 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 7.46 Total: 27.28 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -3.99 Total: -100.52 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: 0.11 Total: -61.42 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -83.22 6.60 -76.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787809523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.656 kcal (2) G-P(sol) polarization free energy of solvation -83.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds