Wall clock time and date at job start Tue Mar 31 2020 14:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47711 * 2 1 4 4 C 1.46500 * 120.00065 * 270.00360 * 3 2 1 5 5 C 1.50700 * 109.46977 * 269.99301 * 4 3 2 6 6 H 1.07994 * 120.00031 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99821 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00406 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99748 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47195 * 60.00331 * 9 7 5 11 11 H 1.48500 * 109.47360 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47149 * 300.00465 * 9 7 5 13 13 C 1.34778 * 120.00068 * 89.99075 * 3 2 1 14 14 O 1.21283 * 120.00031 * 180.02562 * 13 3 2 15 15 C 1.50692 * 119.99950 * 0.02562 * 13 3 2 16 16 O 1.45203 * 109.47413 * 179.97438 * 15 13 3 17 17 C 1.34748 * 117.00483 * 179.97438 * 16 15 13 18 18 O 1.21522 * 120.00074 * 0.02562 * 17 16 15 19 19 C 1.47283 * 120.00313 * 179.97438 * 17 16 15 20 20 C 1.41343 * 126.42661 * 359.97438 * 19 17 16 21 21 N 1.30433 * 108.01626 * 179.77376 * 20 19 17 22 22 N 1.39924 * 108.91571 * 0.38371 * 21 20 19 23 23 C 1.46500 * 125.74379 * 179.86995 * 22 21 20 24 24 C 1.52997 * 109.47473 * 264.69222 * 23 22 21 25 25 C 1.53006 * 109.47249 * 144.68924 * 23 22 21 26 26 C 1.34230 * 108.51587 * 359.60584 * 22 21 20 27 27 H 1.09000 * 109.47242 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46880 * 300.00393 * 1 2 3 29 29 H 1.08996 * 109.46834 * 60.00044 * 1 2 3 30 30 H 1.09004 * 109.47247 * 239.99972 * 2 1 3 31 31 H 1.09005 * 109.46962 * 119.99832 * 2 1 3 32 32 H 1.09009 * 109.47115 * 29.99134 * 4 3 2 33 33 H 1.08998 * 109.47700 * 149.99252 * 4 3 2 34 34 H 0.96993 * 120.00100 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47445 * 59.99489 * 15 13 3 36 36 H 1.09007 * 109.47142 * 299.99206 * 15 13 3 37 37 H 1.08003 * 125.99336 * 359.97438 * 20 19 17 38 38 H 1.08998 * 109.46845 * 24.69771 * 23 22 21 39 39 H 1.09002 * 109.47153 * 59.99757 * 24 23 22 40 40 H 1.09001 * 109.46832 * 299.99948 * 24 23 22 41 41 H 1.09004 * 109.47261 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47002 * 60.00085 * 25 23 22 43 43 H 1.08993 * 109.46955 * 180.02562 * 25 23 22 44 44 H 1.09000 * 109.47050 * 300.00351 * 25 23 22 45 45 H 1.08000 * 126.29478 * 180.22525 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0962 7 6 4.1492 2.3896 -2.8779 8 7 3.3493 3.1256 -3.6181 9 14 5.9132 2.0954 -3.4175 10 1 6.1403 0.6386 -3.5948 11 1 6.1609 2.7955 -4.7035 12 1 6.8411 2.6187 -2.3829 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9921 1.3061 2.4722 16 8 2.3070 2.1955 3.5759 17 6 2.1351 1.7100 4.8211 18 8 1.7335 0.5742 4.9804 19 6 2.4351 2.5556 5.9892 20 6 2.9077 3.8874 5.9620 21 7 3.0459 4.2916 7.1944 22 7 2.6824 3.2512 8.0565 23 6 2.7016 3.3065 9.5203 24 6 4.0203 2.7263 10.0354 25 6 1.5333 2.4903 10.0770 26 6 2.3076 2.1958 7.3166 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0284 33 1 2.0957 3.1410 -1.1385 34 1 3.6751 3.5155 -4.4443 35 1 2.6224 0.4188 2.5299 36 1 0.9441 1.0117 2.5301 37 1 3.1148 4.4694 5.0761 38 1 2.6086 4.3425 9.8460 39 1 4.8526 3.3077 9.6389 40 1 4.1131 1.6902 9.7097 41 1 4.0347 2.7678 11.1246 42 1 1.6261 1.4542 9.7513 43 1 1.5473 2.5318 11.1660 44 1 0.5938 2.9037 9.7100 45 1 1.9688 1.2409 7.6905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787810735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:11 Heat of formation + Delta-G solvation = -66.955389 kcal Electronic energy + Delta-G solvation = -26839.344836 eV Core-core repulsion = 22858.213839 eV Total energy + Delta-G solvation = -3981.130997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.59605 -41.38851 -40.36723 -37.48412 -36.92048 -36.78637 -34.92116 -31.87509 -31.63482 -31.48865 -30.41135 -28.39566 -28.22198 -25.50798 -24.68178 -24.03624 -23.37497 -21.68810 -20.98365 -20.23788 -19.19635 -18.61205 -18.14284 -17.79001 -17.64531 -17.11240 -16.56905 -16.48660 -16.16043 -15.84474 -15.76492 -15.10639 -14.80435 -14.64142 -14.50850 -14.05846 -13.99017 -13.79327 -13.74494 -13.55736 -13.25935 -13.23075 -13.09686 -13.07171 -12.65143 -12.50917 -12.46490 -12.37554 -12.19092 -12.03616 -12.01323 -11.76325 -11.69637 -11.48425 -10.69655 -10.68937 -10.63013 -9.92169 -9.51809 -8.21702 -6.36065 0.25789 0.94826 1.10114 1.37664 1.42278 1.48137 1.52108 1.65489 2.09183 2.35445 2.49885 3.08220 3.37065 3.47550 3.65128 3.77843 3.85506 3.91038 4.00262 4.03238 4.07362 4.19302 4.28905 4.41066 4.52857 4.62006 4.63330 4.70440 4.79905 4.87621 4.91659 4.97283 5.05172 5.15280 5.20346 5.21240 5.26969 5.35153 5.38879 5.56288 5.80489 5.81960 6.05994 6.40046 6.60024 6.72794 6.74428 7.23894 7.38865 8.85509 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.002433 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.881364 B =11507.651743 C =12383.845058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.065 3.935 16 O -0.346 6.346 17 C 0.548 3.452 18 O -0.537 6.537 19 C -0.308 4.308 20 C 0.098 3.902 21 N -0.321 5.321 22 N -0.345 5.345 23 C 0.140 3.860 24 C -0.162 4.162 25 C -0.164 4.164 26 C 0.158 3.842 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.030 0.970 33 H -0.001 1.001 34 H 0.267 0.733 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.197 0.803 38 H 0.111 0.889 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.062 0.938 45 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 -7.556 28.846 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.286 3.714 14 O -0.457 6.457 15 C -0.012 4.012 16 O -0.261 6.261 17 C 0.395 3.605 18 O -0.428 6.428 19 C -0.321 4.321 20 C -0.090 4.090 21 N -0.140 5.140 22 N -0.123 5.123 23 C 0.041 3.959 24 C -0.220 4.220 25 C -0.222 4.222 26 C 0.004 3.996 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.213 0.787 38 H 0.129 0.871 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.096 0.904 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.699 -6.188 29.616 30.618 hybrid contribution 0.619 -0.329 -1.667 1.809 sum -4.080 -6.517 27.948 28.987 Atomic orbital electron populations 1.22177 0.94342 1.03782 1.01827 1.21869 0.95554 0.80970 1.04415 1.48200 1.63672 1.15274 1.05642 1.18781 0.95553 0.91653 0.79791 1.21675 0.97841 1.32182 1.06585 0.92740 1.25850 1.02378 0.94468 0.96435 1.70036 1.37799 1.34087 1.14774 0.85478 0.79026 0.79058 0.77308 1.18368 1.20355 1.20447 1.20557 0.78295 0.86652 0.85848 1.90677 1.47080 1.20175 1.87759 1.22804 1.04727 0.91955 0.81690 1.86597 1.79370 1.45315 1.14852 1.20241 0.73265 0.84811 0.82200 1.90788 1.45411 1.19778 1.86847 1.19340 1.24278 0.97202 0.91282 1.24387 0.94694 0.93828 0.96057 1.77226 1.24184 1.12028 1.00534 1.49260 1.46692 1.08314 1.08062 1.21893 0.98845 1.04035 0.71130 1.22256 0.94624 1.01449 1.03693 1.22284 0.95596 1.00386 1.03947 1.23223 0.92767 0.94591 0.89056 0.88356 0.92396 0.93753 0.90030 0.88326 0.95239 0.98288 0.92371 0.86445 0.85986 0.78673 0.87112 0.93243 0.91457 0.87396 0.90364 0.87088 0.91909 0.76336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 10.24 71.98 0.74 -3.30 16 2 C 0.09 2.85 5.93 86.38 0.51 3.36 16 3 N -0.60 -25.56 2.46 -826.15 -2.03 -27.59 16 4 C 0.26 14.29 5.16 85.63 0.44 14.73 16 5 C -0.54 -31.60 9.39 25.60 0.24 -31.36 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.45 5.46 84.66 0.46 0.92 16 8 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 9 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 C 0.50 21.79 7.75 87.65 0.68 22.47 16 14 O -0.58 -31.46 16.08 15.76 0.25 -31.21 16 15 C 0.06 2.10 4.51 71.23 0.32 2.42 16 16 O -0.35 -11.99 9.60 -50.20 -0.48 -12.48 16 17 C 0.55 16.32 7.95 70.20 0.56 16.88 16 18 O -0.54 -16.29 16.69 19.76 0.33 -15.96 16 19 C -0.31 -7.81 6.13 -20.16 -0.12 -7.94 16 20 C 0.10 2.56 11.87 85.66 1.02 3.57 16 21 N -0.32 -7.81 12.50 -56.24 -0.70 -8.52 16 22 N -0.35 -6.03 3.50 -325.70 -1.14 -7.17 16 23 C 0.14 1.27 3.91 44.99 0.18 1.45 16 24 C -0.16 -1.14 9.52 71.98 0.69 -0.45 16 25 C -0.16 -0.62 8.82 71.98 0.64 0.01 16 26 C 0.16 2.83 10.39 84.30 0.88 3.71 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 2.58 8.07 -2.38 -0.02 2.56 16 31 H 0.10 2.34 6.44 -2.38 -0.02 2.33 16 32 H 0.03 1.61 8.07 -2.38 -0.02 1.59 16 33 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.12 3.26 7.40 -2.39 -0.02 3.25 16 36 H 0.12 3.25 7.18 -2.38 -0.02 3.24 16 37 H 0.20 5.08 8.06 -2.91 -0.02 5.06 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 42 H 0.08 0.20 7.13 -2.39 -0.02 0.18 16 43 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.22 2.40 7.23 -2.91 -0.02 2.38 16 Total: -1.00 -82.17 387.47 6.75 -75.43 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.99 Total: 9.85 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: 7.22 Total: 26.47 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -3.59 Total: -99.45 kcal Atomic # 8 Polarization: -59.75 SS G_CDS: 0.10 Total: -59.64 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -82.17 6.75 -75.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787810735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.470 kcal (2) G-P(sol) polarization free energy of solvation -82.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds