Wall clock time and date at job start Tue Mar 31 2020 14:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.46975 * 2 1 4 4 N 1.40080 * 126.03855 * 270.15434 * 3 2 1 5 5 C 1.30836 * 108.20867 * 180.23079 * 4 3 2 6 6 C 1.50695 * 125.90309 * 179.81600 * 5 4 3 7 7 C 1.39880 * 108.19611 * 359.77857 * 5 4 3 8 8 C 1.50706 * 126.03564 * 179.97438 * 7 5 4 9 9 C 1.50689 * 109.47334 * 270.02957 * 8 7 5 10 10 O 1.20826 * 120.00140 * 359.97438 * 9 8 7 11 11 O 1.34232 * 120.00044 * 180.02562 * 9 8 7 12 12 C 1.45202 * 117.00298 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47114 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00183 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99981 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00314 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47278 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00109 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99901 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99853 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99902 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47235 * 60.00017 * 21 19 17 23 23 H 1.48497 * 109.46951 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47195 * 300.00167 * 21 19 17 25 25 C 1.34946 * 126.03491 * 89.99650 * 3 2 1 26 26 C 1.50703 * 126.12821 * 0.04077 * 25 3 2 27 27 H 1.09002 * 109.47268 * 60.00269 * 1 2 3 28 28 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47583 * 299.99398 * 1 2 3 30 30 H 1.08995 * 109.47583 * 240.00602 * 2 1 3 31 31 H 1.09002 * 109.47268 * 119.99731 * 2 1 3 32 32 H 1.09003 * 109.46956 * 269.95831 * 6 5 4 33 33 H 1.08999 * 109.47037 * 29.95728 * 6 5 4 34 34 H 1.09003 * 109.47071 * 149.95864 * 6 5 4 35 35 H 1.08997 * 109.46991 * 30.03182 * 8 7 5 36 36 H 1.08996 * 109.46546 * 150.02478 * 8 7 5 37 37 H 1.08999 * 109.46850 * 300.00018 * 12 11 9 38 38 H 1.09000 * 109.47070 * 59.99210 * 12 11 9 39 39 H 0.97004 * 119.99809 * 0.02562 * 15 13 12 40 40 H 1.08998 * 109.46737 * 300.00008 * 16 15 13 41 41 H 1.09002 * 109.46800 * 60.00009 * 16 15 13 42 42 H 0.97003 * 119.99757 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.47152 * 269.68605 * 26 25 3 44 44 H 1.09001 * 109.46980 * 149.68706 * 26 25 3 45 45 H 1.09004 * 109.47113 * 29.68687 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2901 2.1593 -1.1327 5 6 2.7110 3.3316 -0.7321 6 6 3.1191 4.4760 -1.6236 7 6 2.7158 3.3394 0.6666 8 6 3.1307 4.4913 1.5454 9 6 4.6062 4.3956 1.8358 10 8 5.2545 3.4851 1.3767 11 8 5.2003 5.3212 2.6053 12 6 6.6244 5.1662 2.8424 13 6 7.1125 6.2891 3.7208 14 8 6.3367 7.1369 4.1085 15 7 8.4112 6.3513 4.0757 16 6 8.8860 7.4433 4.9292 17 6 10.3637 7.2816 5.1764 18 1 10.8960 6.4485 4.7416 19 6 11.0360 8.1967 5.9586 20 7 10.3875 9.2103 6.4893 21 14 12.8676 7.9958 6.2656 22 1 13.5933 8.0293 4.9704 23 1 13.3485 9.1021 7.1317 24 1 13.1171 6.6961 6.9393 25 6 2.2828 2.1298 1.0913 26 6 2.1297 1.6943 2.5258 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.1851 4.4056 -1.8400 33 1 2.5554 4.4296 -2.5553 34 1 2.9120 5.4204 -1.1202 35 1 2.9210 5.4314 1.0352 36 1 2.5730 4.4535 2.4811 37 1 6.8087 4.2124 3.3366 38 1 7.1559 5.1911 1.8911 39 1 9.0318 5.6734 3.7653 40 1 8.7021 8.3971 4.4347 41 1 8.3540 7.4185 5.8803 42 1 10.8604 9.8538 7.0398 43 1 1.1255 1.9363 2.8738 44 1 2.8630 2.2131 3.1433 45 1 2.2898 0.6185 2.5981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795807652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:29 Heat of formation + Delta-G solvation = -61.481501 kcal Electronic energy + Delta-G solvation = -26459.272313 eV Core-core repulsion = 22478.378682 eV Total energy + Delta-G solvation = -3980.893632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74710 -40.33470 -38.66343 -36.32675 -35.34485 -34.23214 -33.34526 -32.40349 -31.90069 -29.95214 -28.95444 -27.60085 -26.88179 -26.10153 -23.39103 -22.62933 -21.33953 -19.92583 -19.77485 -19.58683 -17.74576 -17.45579 -16.92841 -16.57999 -16.11328 -15.66495 -15.26698 -15.07351 -14.90789 -14.83436 -14.25668 -14.10198 -13.67863 -13.62455 -13.50047 -13.37414 -13.01897 -12.95603 -12.73285 -12.49384 -12.35725 -12.29150 -12.07545 -11.97822 -11.91471 -11.71395 -11.70107 -11.03143 -10.90086 -10.67689 -10.62138 -10.50097 -10.34313 -9.45213 -9.26124 -9.15970 -8.77397 -8.56161 -7.97699 -6.19221 -4.26680 1.58360 2.15561 2.24349 2.28510 2.84043 3.20196 3.24431 3.29382 3.30874 4.05844 4.08995 4.28974 4.34317 4.51688 4.56358 4.61557 4.75948 4.80904 4.89033 4.99896 5.10948 5.13269 5.15848 5.16821 5.22016 5.26062 5.28537 5.35351 5.37467 5.45842 5.50044 5.59591 5.69837 5.80517 5.93015 6.40361 6.50858 6.78880 7.23454 7.32267 7.46493 7.53481 7.60462 7.81257 7.92544 8.51277 8.71812 8.97750 9.39649 10.90826 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.001916 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.118390 B =14610.045105 C =14784.171850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.369 5.369 4 N -0.298 5.298 5 C 0.095 3.905 6 C -0.077 4.077 7 C -0.231 4.231 8 C -0.029 4.029 9 C 0.457 3.543 10 O -0.503 6.503 11 O -0.331 6.331 12 C 0.049 3.951 13 C 0.500 3.500 14 O -0.534 6.534 15 N -0.707 5.707 16 C 0.251 3.749 17 C -0.546 4.546 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.107 3.893 26 C -0.096 4.096 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.393 0.607 40 H 0.030 0.970 41 H 0.029 0.971 42 H 0.267 0.733 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.753 -17.651 -12.608 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.150 5.150 4 N -0.119 5.119 5 C -0.072 4.072 6 C -0.136 4.136 7 C -0.243 4.243 8 C -0.068 4.068 9 C 0.299 3.701 10 O -0.391 6.391 11 O -0.246 6.246 12 C -0.028 4.028 13 C 0.282 3.718 14 O -0.412 6.412 15 N -0.358 5.358 16 C 0.131 3.869 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.201 1.201 25 C -0.021 4.021 26 C -0.154 4.154 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.225 0.775 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.375 -18.016 -13.323 30.285 hybrid contribution 1.701 -0.121 0.722 1.852 sum -18.674 -18.137 -12.601 28.921 Atomic orbital electron populations 1.22182 0.94241 1.03050 1.03261 1.21648 0.95175 0.78004 1.04420 1.48427 1.51653 1.11748 1.03217 1.77305 1.23553 1.03534 1.07554 1.22134 0.97613 0.94255 0.93183 1.20227 1.02112 0.93323 0.97888 1.18968 1.16018 0.96114 0.93157 1.19479 0.88006 0.98451 1.00862 1.23930 0.91518 0.79367 0.75266 1.90662 1.65962 1.33601 1.48861 1.86574 1.24047 1.50238 1.63785 1.22818 0.79180 0.99655 1.01182 1.19914 0.83668 0.86272 0.81897 1.90704 1.54844 1.40436 1.55193 1.46372 1.07328 1.30577 1.51485 1.19166 0.94132 0.84318 0.89260 1.21178 0.92955 1.11534 1.32776 0.91830 1.24949 0.99038 0.94799 0.95179 1.69963 1.36543 1.13233 1.32431 0.86449 0.84154 0.77830 0.78321 1.20040 1.21042 1.20058 1.20774 0.99067 0.91473 0.90777 1.20515 1.03626 1.02275 0.89018 0.91595 0.90496 0.91978 0.88710 0.88989 0.90290 0.90790 0.90314 0.86794 0.87135 0.88750 0.88667 0.77464 0.95253 0.95267 0.92322 0.89827 0.89642 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.24 37.15 0.38 -0.46 16 2 C 0.13 0.83 6.96 -4.04 -0.03 0.80 16 3 N -0.37 -3.82 3.61 -57.14 -0.21 -4.03 16 4 N -0.30 -3.76 12.58 33.67 0.42 -3.34 16 5 C 0.09 1.12 7.22 -82.40 -0.59 0.52 16 6 C -0.08 -0.70 10.26 36.00 0.37 -0.33 16 7 C -0.23 -2.58 4.59 -105.05 -0.48 -3.06 16 8 C -0.03 -0.29 5.72 -29.04 -0.17 -0.46 16 9 C 0.46 6.15 7.95 36.00 0.29 6.43 16 10 O -0.50 -7.92 15.78 -18.75 -0.30 -8.21 16 11 O -0.33 -5.15 9.75 -45.91 -0.45 -5.60 16 12 C 0.05 0.75 5.94 36.00 0.21 0.97 16 13 C 0.50 10.00 7.91 -10.99 -0.09 9.91 16 14 O -0.53 -12.99 16.50 -14.10 -0.23 -13.23 16 15 N -0.71 -14.63 5.55 -61.47 -0.34 -14.97 16 16 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 17 C -0.55 -14.62 9.28 -34.44 -0.32 -14.94 16 18 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.88 -25.76 13.29 55.43 0.74 -25.03 16 21 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 25 C 0.11 1.08 6.93 -82.27 -0.57 0.51 16 26 C -0.10 -0.65 9.73 36.01 0.35 -0.30 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.41 7.04 -51.93 -0.37 0.05 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.58 7.26 -51.93 -0.38 0.20 16 35 H 0.11 0.94 7.26 -51.93 -0.38 0.56 16 36 H 0.11 0.87 7.77 -51.93 -0.40 0.47 16 37 H 0.09 1.27 8.13 -51.93 -0.42 0.84 16 38 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 39 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.62 7.78 -51.93 -0.40 0.22 16 45 H 0.07 0.39 7.07 -51.93 -0.37 0.02 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -36.48 389.48 -7.11 -43.59 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.82 Total: 1.51 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -0.77 Total: 7.80 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.61 Total: -47.36 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.98 Total: -27.03 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.48 -7.11 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795807652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.891 kcal (2) G-P(sol) polarization free energy of solvation -36.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds