Wall clock time and date at job start Tue Mar 31 2020 14:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.46975 * 2 1 4 4 N 1.40080 * 126.03855 * 270.15434 * 3 2 1 5 5 C 1.30836 * 108.20867 * 180.23079 * 4 3 2 6 6 C 1.50695 * 125.90309 * 179.81600 * 5 4 3 7 7 C 1.39880 * 108.19611 * 359.77857 * 5 4 3 8 8 C 1.50706 * 126.03564 * 179.97438 * 7 5 4 9 9 C 1.50689 * 109.47334 * 270.02957 * 8 7 5 10 10 O 1.20826 * 120.00140 * 359.97438 * 9 8 7 11 11 O 1.34232 * 120.00044 * 180.02562 * 9 8 7 12 12 C 1.45202 * 117.00298 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47114 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00183 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99981 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00314 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47278 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00109 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99901 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99853 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99902 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47235 * 60.00017 * 21 19 17 23 23 H 1.48497 * 109.46951 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47195 * 300.00167 * 21 19 17 25 25 C 1.34946 * 126.03491 * 89.99650 * 3 2 1 26 26 C 1.50703 * 126.12821 * 0.04077 * 25 3 2 27 27 H 1.09002 * 109.47268 * 60.00269 * 1 2 3 28 28 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47583 * 299.99398 * 1 2 3 30 30 H 1.08995 * 109.47583 * 240.00602 * 2 1 3 31 31 H 1.09002 * 109.47268 * 119.99731 * 2 1 3 32 32 H 1.09003 * 109.46956 * 269.95831 * 6 5 4 33 33 H 1.08999 * 109.47037 * 29.95728 * 6 5 4 34 34 H 1.09003 * 109.47071 * 149.95864 * 6 5 4 35 35 H 1.08997 * 109.46991 * 30.03182 * 8 7 5 36 36 H 1.08996 * 109.46546 * 150.02478 * 8 7 5 37 37 H 1.08999 * 109.46850 * 300.00018 * 12 11 9 38 38 H 1.09000 * 109.47070 * 59.99210 * 12 11 9 39 39 H 0.97004 * 119.99809 * 0.02562 * 15 13 12 40 40 H 1.08998 * 109.46737 * 300.00008 * 16 15 13 41 41 H 1.09002 * 109.46800 * 60.00009 * 16 15 13 42 42 H 0.97003 * 119.99757 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.47152 * 269.68605 * 26 25 3 44 44 H 1.09001 * 109.46980 * 149.68706 * 26 25 3 45 45 H 1.09004 * 109.47113 * 29.68687 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2901 2.1593 -1.1327 5 6 2.7110 3.3316 -0.7321 6 6 3.1191 4.4760 -1.6236 7 6 2.7158 3.3394 0.6666 8 6 3.1307 4.4913 1.5454 9 6 4.6062 4.3956 1.8358 10 8 5.2545 3.4851 1.3767 11 8 5.2003 5.3212 2.6053 12 6 6.6244 5.1662 2.8424 13 6 7.1125 6.2891 3.7208 14 8 6.3367 7.1369 4.1085 15 7 8.4112 6.3513 4.0757 16 6 8.8860 7.4433 4.9292 17 6 10.3637 7.2816 5.1764 18 1 10.8960 6.4485 4.7416 19 6 11.0360 8.1967 5.9586 20 7 10.3875 9.2103 6.4893 21 14 12.8676 7.9958 6.2656 22 1 13.5933 8.0293 4.9704 23 1 13.3485 9.1021 7.1317 24 1 13.1171 6.6961 6.9393 25 6 2.2828 2.1298 1.0913 26 6 2.1297 1.6943 2.5258 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.1851 4.4056 -1.8400 33 1 2.5554 4.4296 -2.5553 34 1 2.9120 5.4204 -1.1202 35 1 2.9210 5.4314 1.0352 36 1 2.5730 4.4535 2.4811 37 1 6.8087 4.2124 3.3366 38 1 7.1559 5.1911 1.8911 39 1 9.0318 5.6734 3.7653 40 1 8.7021 8.3971 4.4347 41 1 8.3540 7.4185 5.8803 42 1 10.8604 9.8538 7.0398 43 1 1.1255 1.9363 2.8738 44 1 2.8630 2.2131 3.1433 45 1 2.2898 0.6185 2.5981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795807652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:28 Heat of formation + Delta-G solvation = -85.737907 kcal Electronic energy + Delta-G solvation = -26460.324150 eV Core-core repulsion = 22478.378682 eV Total energy + Delta-G solvation = -3981.945468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.51308 -41.49289 -40.29515 -37.50741 -36.16046 -35.99052 -34.40243 -34.08378 -32.52570 -31.02094 -30.17035 -28.54561 -28.18123 -27.03792 -24.66646 -23.88898 -22.38651 -21.60960 -20.56690 -20.32746 -19.18910 -18.78240 -17.90478 -17.80691 -17.41700 -17.05807 -16.76577 -16.26198 -16.21790 -15.78626 -15.46205 -15.09704 -14.64329 -14.54809 -14.28486 -14.15807 -14.14434 -14.02419 -13.86361 -13.62917 -13.57336 -13.26923 -13.03983 -12.95283 -12.93866 -12.69404 -12.67309 -12.56545 -12.23385 -12.16737 -11.83408 -11.61024 -11.51082 -11.43957 -10.88094 -10.79600 -10.01167 -9.90939 -9.32679 -8.28416 -6.45017 0.83146 1.20887 1.24065 1.45085 1.48403 1.56687 1.58279 1.58506 1.83667 2.37014 2.68237 3.06603 3.47682 3.67872 3.70489 3.85392 3.97907 4.04362 4.08047 4.09145 4.14007 4.19635 4.31598 4.33217 4.55098 4.63297 4.67812 4.75275 4.76392 4.79996 4.97440 5.04501 5.09107 5.09354 5.18359 5.23717 5.25129 5.35949 5.43568 5.64642 5.72941 5.83376 6.14724 6.63534 6.70659 6.76197 6.82768 7.21761 7.37489 8.83338 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.001916 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.118390 B =14610.045105 C =14784.171850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.118 3.882 3 N -0.372 5.372 4 N -0.335 5.335 5 C 0.078 3.922 6 C -0.077 4.077 7 C -0.254 4.254 8 C -0.024 4.024 9 C 0.463 3.537 10 O -0.527 6.527 11 O -0.347 6.347 12 C 0.061 3.939 13 C 0.500 3.500 14 O -0.582 6.582 15 N -0.700 5.700 16 C 0.267 3.733 17 C -0.559 4.559 18 H 0.085 0.915 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.984 3.016 22 H -0.263 1.263 23 H -0.286 1.286 24 H -0.263 1.263 25 C 0.105 3.895 26 C -0.095 4.095 27 H 0.045 0.955 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.412 0.588 40 H -0.007 1.007 41 H -0.007 1.007 42 H 0.269 0.731 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.410 -19.710 -12.660 30.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.002 4.002 3 N -0.154 5.154 4 N -0.157 5.157 5 C -0.088 4.088 6 C -0.135 4.135 7 C -0.265 4.265 8 C -0.062 4.062 9 C 0.307 3.693 10 O -0.416 6.416 11 O -0.263 6.263 12 C -0.016 4.016 13 C 0.286 3.714 14 O -0.462 6.462 15 N -0.352 5.352 16 C 0.144 3.856 17 C -0.597 4.597 18 H 0.103 0.897 19 C -0.195 4.195 20 N -0.567 5.567 21 Si 0.808 3.192 22 H -0.188 1.188 23 H -0.211 1.211 24 H -0.187 1.187 25 C -0.024 4.024 26 C -0.153 4.153 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.248 0.752 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.099 0.901 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.037 -20.133 -13.417 31.414 hybrid contribution 1.491 0.461 0.713 1.716 sum -18.546 -19.672 -12.704 29.872 Atomic orbital electron populations 1.22121 0.93073 1.04320 1.02337 1.21997 0.96148 0.76516 1.05506 1.48774 1.51177 1.12650 1.02779 1.77227 1.24930 1.04360 1.09228 1.22566 0.97518 0.94598 0.94114 1.20294 1.01691 0.93403 0.98122 1.19180 1.17204 0.97074 0.93048 1.19608 0.85578 0.98987 1.02004 1.24569 0.92445 0.78281 0.74008 1.90651 1.66695 1.34485 1.49765 1.86583 1.23902 1.51321 1.64532 1.22661 0.79802 0.97925 1.01206 1.20698 0.82707 0.86684 0.81316 1.90680 1.55946 1.42621 1.56997 1.46060 1.08378 1.29813 1.50906 1.18623 0.94281 0.84593 0.88078 1.21587 0.93116 1.12187 1.32767 0.89687 1.26038 1.04511 0.94224 0.94696 1.70124 1.38875 1.14371 1.33341 0.85212 0.77402 0.78065 0.78561 1.18767 1.21123 1.18714 1.21332 0.97756 0.91226 0.92069 1.20642 1.04755 1.03218 0.86728 0.93536 0.88102 0.91779 0.88883 0.86654 0.90906 0.90206 0.88720 0.85085 0.84842 0.86185 0.86352 0.75228 0.98934 0.98876 0.92203 0.87681 0.90053 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.24 71.98 0.74 -0.61 16 2 C 0.12 1.35 6.96 86.38 0.60 1.95 16 3 N -0.37 -7.35 3.61 -334.69 -1.21 -8.55 16 4 N -0.34 -8.44 12.58 -47.38 -0.60 -9.03 16 5 C 0.08 1.81 7.22 43.10 0.31 2.12 16 6 C -0.08 -1.37 10.26 71.23 0.73 -0.64 16 7 C -0.25 -5.36 4.59 -20.14 -0.09 -5.45 16 8 C -0.02 -0.43 5.72 29.10 0.17 -0.26 16 9 C 0.46 11.71 7.95 71.23 0.57 12.28 16 10 O -0.53 -15.78 15.78 21.96 0.35 -15.44 16 11 O -0.35 -10.31 9.75 -45.08 -0.44 -10.75 16 12 C 0.06 1.76 5.94 71.23 0.42 2.19 16 13 C 0.50 19.95 7.91 87.65 0.69 20.64 16 14 O -0.58 -28.98 16.50 15.78 0.26 -28.72 16 15 N -0.70 -28.88 5.55 -466.79 -2.59 -31.47 16 16 C 0.27 14.35 5.43 85.63 0.46 14.82 16 17 C -0.56 -29.85 9.28 25.60 0.24 -29.62 16 18 H 0.09 4.07 7.60 -2.91 -0.02 4.05 16 19 C 0.01 0.29 5.46 84.65 0.46 0.75 16 20 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 21 Si 0.98 41.76 29.54 68.60 2.03 43.78 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 C 0.11 1.96 6.93 41.40 0.29 2.25 16 26 C -0.10 -1.05 9.73 71.24 0.69 -0.36 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 31 H 0.12 0.74 7.04 -2.39 -0.02 0.73 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.31 7.26 -2.39 -0.02 1.29 16 35 H 0.13 1.92 7.26 -2.39 -0.02 1.90 16 36 H 0.13 1.80 7.77 -2.39 -0.02 1.78 16 37 H 0.12 2.90 8.13 -2.39 -0.02 2.88 16 38 H 0.12 2.93 8.13 -2.39 -0.02 2.91 16 39 H 0.41 13.74 8.32 -92.71 -0.77 12.97 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.08 0.99 7.78 -2.39 -0.02 0.98 16 45 H 0.09 0.69 7.07 -2.38 -0.02 0.67 16 Total: -1.00 -81.55 389.48 4.60 -76.95 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.24 Total: 18.14 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 6.28 Total: 20.06 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -4.11 Total: -104.02 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: 0.17 Total: -54.91 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -81.55 4.60 -76.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795807652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.791 kcal (2) G-P(sol) polarization free energy of solvation -81.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds