Wall clock time and date at job start Tue Mar 31 2020 14:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46858 * 2 1 4 4 C 1.46493 * 120.00462 * 270.00349 * 3 2 1 5 5 C 1.50699 * 109.46766 * 270.00114 * 4 3 2 6 6 H 1.07996 * 120.00260 * 359.97438 * 5 4 3 7 7 C 1.37885 * 120.00034 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99800 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00114 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47271 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47181 * 120.00288 * 9 7 5 12 12 H 1.48500 * 109.47192 * 240.00310 * 9 7 5 13 13 C 1.34783 * 119.99543 * 90.00017 * 3 2 1 14 14 O 1.21275 * 119.99750 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00343 * 0.02562 * 13 3 2 16 16 O 1.45195 * 109.47001 * 179.97438 * 15 13 3 17 17 C 1.34236 * 116.99634 * 179.97438 * 16 15 13 18 18 O 1.20821 * 119.99927 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99716 * 179.97438 * 17 16 15 20 20 C 1.50702 * 109.46927 * 180.02562 * 19 17 16 21 21 C 1.39872 * 126.03842 * 264.97520 * 20 19 17 22 22 N 1.30828 * 108.20306 * 180.02562 * 21 20 19 23 23 N 1.40081 * 108.20591 * 359.78274 * 22 21 20 24 24 C 1.46503 * 126.03723 * 180.23447 * 23 22 21 25 25 C 1.34940 * 107.92509 * 0.36139 * 23 22 21 26 26 C 1.50706 * 126.13005 * 179.90777 * 25 23 22 27 27 H 1.09004 * 109.46947 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46941 * 299.99918 * 1 2 3 29 29 H 1.08995 * 109.47380 * 59.99401 * 1 2 3 30 30 H 1.08998 * 109.47157 * 240.00808 * 2 1 3 31 31 H 1.08995 * 109.47055 * 119.99889 * 2 1 3 32 32 H 1.09007 * 109.47110 * 29.99716 * 4 3 2 33 33 H 1.09000 * 109.47435 * 150.00146 * 4 3 2 34 34 H 0.97003 * 120.00055 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47062 * 59.99632 * 15 13 3 36 36 H 1.09000 * 109.46439 * 299.99900 * 15 13 3 37 37 H 1.09001 * 109.47023 * 60.00403 * 19 17 16 38 38 H 1.09000 * 109.47586 * 300.00273 * 19 17 16 39 39 H 1.08009 * 125.89832 * 359.97438 * 21 20 19 40 40 H 1.08999 * 109.47072 * 270.14685 * 24 23 22 41 41 H 1.08995 * 109.47552 * 30.15181 * 24 23 22 42 42 H 1.09005 * 109.47194 * 150.15115 * 24 23 22 43 43 H 1.08999 * 109.47015 * 269.69246 * 26 25 23 44 44 H 1.09000 * 109.46646 * 29.68398 * 26 25 23 45 45 H 1.09000 * 109.47248 * 149.69116 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2686 5 6 3.6857 1.8352 -1.7036 6 1 4.3428 1.2311 -1.0957 7 6 4.1490 2.3899 -2.8779 8 7 3.3490 3.1260 -3.6179 9 14 5.9130 2.0959 -3.4175 10 1 6.6004 1.2398 -2.4176 11 1 5.9200 1.4168 -4.7381 12 1 6.6209 3.3968 -3.5261 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1598 1.1673 15 6 1.9923 1.3059 2.4724 16 8 2.3073 2.1953 3.5760 17 6 2.1362 1.7115 4.8164 18 8 1.7371 0.5822 4.9746 19 6 2.4432 2.5766 6.0115 20 6 2.1701 1.8026 7.2754 21 6 0.9865 1.8341 8.0201 22 7 1.1274 1.0340 9.0455 23 7 2.4052 0.4632 8.9829 24 6 2.9685 -0.4957 9.9366 25 6 3.0265 0.9547 7.8906 26 6 4.4220 0.6151 7.4339 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1412 -1.1382 34 1 3.6751 3.5166 -4.4438 35 1 2.6229 0.4187 2.5299 36 1 0.9445 1.0114 2.5302 37 1 1.8143 3.4666 5.9870 38 1 3.4921 2.8722 5.9864 39 1 0.1083 2.4189 7.7891 40 1 3.4802 0.0430 10.7341 41 1 2.1665 -1.0989 10.3621 42 1 3.6780 -1.1447 9.4232 43 1 5.1303 1.3128 7.8806 44 1 4.6684 -0.4006 7.7433 45 1 4.4766 0.6876 6.3477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795864859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:14 Heat of formation + Delta-G solvation = -43.290984 kcal Electronic energy + Delta-G solvation = -27033.870849 eV Core-core repulsion = 23053.766018 eV Total energy + Delta-G solvation = -3980.104832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65408 -40.33005 -38.89427 -36.33217 -35.28240 -34.01174 -33.22180 -32.84010 -30.37331 -30.13532 -28.94059 -27.02364 -26.68702 -25.75872 -23.08577 -22.70095 -21.54643 -20.88512 -19.53172 -18.62302 -17.74634 -16.97129 -16.58489 -16.47405 -16.33732 -16.03561 -15.63111 -15.12003 -14.71144 -14.59271 -14.26512 -13.97881 -13.55022 -13.52013 -13.43044 -13.15706 -12.87960 -12.81622 -12.70558 -12.47175 -12.38618 -12.12450 -12.05008 -11.92168 -11.60663 -11.23780 -10.93015 -10.85137 -10.81552 -10.60970 -10.49406 -10.46133 -10.15116 -9.64553 -9.49314 -8.98289 -8.59343 -8.45513 -7.74399 -6.06270 -4.10978 1.57512 2.20228 2.26773 2.32360 2.87551 3.27096 3.29074 3.36946 3.41203 3.94853 4.18868 4.34685 4.43286 4.67784 4.74057 4.76132 4.88625 4.90576 4.95052 5.04392 5.10182 5.15437 5.23898 5.26424 5.28522 5.38495 5.41907 5.51715 5.59612 5.63435 5.74080 5.88620 6.00636 6.19514 6.36174 6.45175 6.50002 6.73855 7.00637 7.40155 7.45874 7.48104 7.82565 7.90352 8.20313 8.30936 8.85294 9.00244 9.54034 11.01928 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.002430 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.744969 B =11519.902280 C =12074.956510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.050 3.950 16 O -0.331 6.331 17 C 0.457 3.543 18 O -0.506 6.506 19 C -0.029 4.029 20 C -0.234 4.234 21 C 0.068 3.932 22 N -0.300 5.300 23 N -0.374 5.374 24 C 0.101 3.899 25 C 0.107 3.893 26 C -0.096 4.096 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.184 0.816 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 -7.363 23.490 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.027 4.027 16 O -0.246 6.246 17 C 0.299 3.701 18 O -0.393 6.393 19 C -0.068 4.068 20 C -0.245 4.245 21 C -0.118 4.118 22 N -0.120 5.120 23 N -0.156 5.156 24 C -0.040 4.040 25 C -0.021 4.021 26 C -0.154 4.154 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.201 0.799 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.344 -7.590 24.482 25.739 hybrid contribution 1.160 -0.157 -1.178 1.661 sum -1.184 -7.746 23.305 24.587 Atomic orbital electron populations 1.22234 0.96552 1.01666 1.02423 1.21499 0.93745 0.83987 1.02963 1.48212 1.63878 1.13382 1.07175 1.19331 0.96467 0.93723 0.77612 1.21462 0.96847 1.31979 1.06276 0.92362 1.24941 0.97918 0.94895 0.96380 1.69940 1.35615 1.33402 1.14340 0.86429 0.84554 0.78069 0.78286 1.19802 1.20982 1.20842 1.19742 0.79666 0.87150 0.84326 1.90711 1.44477 1.17522 1.86761 1.22918 1.02578 0.92641 0.84562 1.86576 1.78640 1.44990 1.14421 1.23939 0.74464 0.87235 0.84462 1.90653 1.41977 1.20078 1.86632 1.19494 1.05181 0.96852 0.85282 1.19129 0.95921 1.08468 1.00988 1.23721 0.98225 0.97553 0.92336 1.77361 0.97101 1.14264 1.23240 1.48342 1.11235 1.35382 1.20633 1.21838 0.99515 0.91016 0.91676 1.20809 0.96379 0.95878 0.89064 1.20515 0.89614 1.02335 1.02978 0.91942 0.93117 0.91785 0.89466 0.91793 0.94658 0.93692 0.92730 0.88905 0.88906 0.86627 0.87088 0.79933 0.90737 0.89236 0.89526 0.89749 0.90889 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.10 1.62 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -12.41 2.46 -175.06 -0.43 -12.84 16 4 C 0.25 6.37 5.16 -5.20 -0.03 6.35 16 5 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 9 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.51 10.69 7.75 -10.98 -0.09 10.61 16 14 O -0.52 -13.30 16.08 -14.10 -0.23 -13.52 16 15 C 0.05 0.82 4.50 36.01 0.16 0.98 16 16 O -0.33 -5.39 9.76 -45.92 -0.45 -5.84 16 17 C 0.46 6.26 7.95 36.00 0.29 6.55 16 18 O -0.51 -7.99 15.78 -18.75 -0.30 -8.28 16 19 C -0.03 -0.29 5.85 -29.04 -0.17 -0.46 16 20 C -0.23 -2.54 4.59 -105.05 -0.48 -3.02 16 21 C 0.07 0.75 11.96 -17.37 -0.21 0.54 16 22 N -0.30 -3.66 12.57 30.63 0.39 -3.28 16 23 N -0.37 -3.84 4.01 -63.88 -0.26 -4.09 16 24 C 0.10 0.59 11.27 59.85 0.67 1.26 16 25 C 0.11 1.08 6.93 -82.27 -0.57 0.51 16 26 C -0.10 -0.68 9.80 36.01 0.35 -0.33 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.09 1.37 7.39 -51.93 -0.38 0.99 16 36 H 0.09 1.34 7.18 -51.93 -0.37 0.97 16 37 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.11 0.90 8.01 -51.93 -0.42 0.49 16 39 H 0.18 1.52 8.06 -52.48 -0.42 1.10 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.33 7.05 -51.93 -0.37 -0.03 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.41 7.07 -51.93 -0.37 0.04 16 45 H 0.09 0.68 7.89 -51.93 -0.41 0.27 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -37.48 386.44 -6.62 -44.09 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.75 Total: -2.33 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -0.13 Total: 9.22 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.44 Total: -45.81 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.97 Total: -27.64 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.48 -6.62 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795864859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.800 kcal (2) G-P(sol) polarization free energy of solvation -37.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds