Wall clock time and date at job start Tue Mar 31 2020 14:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46858 * 2 1 4 4 C 1.46493 * 120.00462 * 270.00349 * 3 2 1 5 5 C 1.50699 * 109.46766 * 270.00114 * 4 3 2 6 6 H 1.07996 * 120.00260 * 359.97438 * 5 4 3 7 7 C 1.37885 * 120.00034 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99800 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00114 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47271 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47181 * 120.00288 * 9 7 5 12 12 H 1.48500 * 109.47192 * 240.00310 * 9 7 5 13 13 C 1.34783 * 119.99543 * 90.00017 * 3 2 1 14 14 O 1.21275 * 119.99750 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00343 * 0.02562 * 13 3 2 16 16 O 1.45195 * 109.47001 * 179.97438 * 15 13 3 17 17 C 1.34236 * 116.99634 * 179.97438 * 16 15 13 18 18 O 1.20821 * 119.99927 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99716 * 179.97438 * 17 16 15 20 20 C 1.50702 * 109.46927 * 180.02562 * 19 17 16 21 21 C 1.39872 * 126.03842 * 264.97520 * 20 19 17 22 22 N 1.30828 * 108.20306 * 180.02562 * 21 20 19 23 23 N 1.40081 * 108.20591 * 359.78274 * 22 21 20 24 24 C 1.46503 * 126.03723 * 180.23447 * 23 22 21 25 25 C 1.34940 * 107.92509 * 0.36139 * 23 22 21 26 26 C 1.50706 * 126.13005 * 179.90777 * 25 23 22 27 27 H 1.09004 * 109.46947 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46941 * 299.99918 * 1 2 3 29 29 H 1.08995 * 109.47380 * 59.99401 * 1 2 3 30 30 H 1.08998 * 109.47157 * 240.00808 * 2 1 3 31 31 H 1.08995 * 109.47055 * 119.99889 * 2 1 3 32 32 H 1.09007 * 109.47110 * 29.99716 * 4 3 2 33 33 H 1.09000 * 109.47435 * 150.00146 * 4 3 2 34 34 H 0.97003 * 120.00055 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47062 * 59.99632 * 15 13 3 36 36 H 1.09000 * 109.46439 * 299.99900 * 15 13 3 37 37 H 1.09001 * 109.47023 * 60.00403 * 19 17 16 38 38 H 1.09000 * 109.47586 * 300.00273 * 19 17 16 39 39 H 1.08009 * 125.89832 * 359.97438 * 21 20 19 40 40 H 1.08999 * 109.47072 * 270.14685 * 24 23 22 41 41 H 1.08995 * 109.47552 * 30.15181 * 24 23 22 42 42 H 1.09005 * 109.47194 * 150.15115 * 24 23 22 43 43 H 1.08999 * 109.47015 * 269.69246 * 26 25 23 44 44 H 1.09000 * 109.46646 * 29.68398 * 26 25 23 45 45 H 1.09000 * 109.47248 * 149.69116 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2686 5 6 3.6857 1.8352 -1.7036 6 1 4.3428 1.2311 -1.0957 7 6 4.1490 2.3899 -2.8779 8 7 3.3490 3.1260 -3.6179 9 14 5.9130 2.0959 -3.4175 10 1 6.6004 1.2398 -2.4176 11 1 5.9200 1.4168 -4.7381 12 1 6.6209 3.3968 -3.5261 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1598 1.1673 15 6 1.9923 1.3059 2.4724 16 8 2.3073 2.1953 3.5760 17 6 2.1362 1.7115 4.8164 18 8 1.7371 0.5822 4.9746 19 6 2.4432 2.5766 6.0115 20 6 2.1701 1.8026 7.2754 21 6 0.9865 1.8341 8.0201 22 7 1.1274 1.0340 9.0455 23 7 2.4052 0.4632 8.9829 24 6 2.9685 -0.4957 9.9366 25 6 3.0265 0.9547 7.8906 26 6 4.4220 0.6151 7.4339 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1412 -1.1382 34 1 3.6751 3.5166 -4.4438 35 1 2.6229 0.4187 2.5299 36 1 0.9445 1.0114 2.5302 37 1 1.8143 3.4666 5.9870 38 1 3.4921 2.8722 5.9864 39 1 0.1083 2.4189 7.7891 40 1 3.4802 0.0430 10.7341 41 1 2.1665 -1.0989 10.3621 42 1 3.6780 -1.1447 9.4232 43 1 5.1303 1.3128 7.8806 44 1 4.6684 -0.4006 7.7433 45 1 4.4766 0.6876 6.3477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795864859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:14 Heat of formation + Delta-G solvation = -66.945433 kcal Electronic energy + Delta-G solvation = -27034.896583 eV Core-core repulsion = 23053.766018 eV Total energy + Delta-G solvation = -3981.130565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.41459 -41.52550 -40.46596 -37.56574 -36.93860 -34.92637 -34.69838 -33.93899 -31.76604 -31.16587 -30.24675 -28.38480 -27.60529 -26.66089 -24.86998 -24.15153 -22.56501 -21.68296 -20.39499 -20.11823 -18.90346 -18.62144 -18.05062 -17.75595 -17.37657 -17.35240 -16.78871 -16.40372 -16.19108 -15.83757 -15.24152 -14.95569 -14.81110 -14.64429 -14.47407 -14.12868 -13.97112 -13.77936 -13.61599 -13.58554 -13.37797 -13.27686 -13.17206 -13.05355 -13.02829 -12.69778 -12.67578 -12.50098 -12.20997 -12.02577 -11.74827 -11.67036 -11.59810 -11.55818 -10.70137 -10.63948 -10.20559 -9.52723 -9.34550 -8.21994 -6.36362 0.83543 1.21642 1.27446 1.38326 1.40651 1.52295 1.64724 1.65273 1.87041 2.37327 2.54781 3.08164 3.46589 3.56382 3.75225 3.78401 3.98007 4.02145 4.09869 4.16732 4.22497 4.34849 4.38419 4.40174 4.43729 4.59014 4.63584 4.71006 4.72716 4.89540 4.93216 4.94846 5.03308 5.03485 5.18558 5.20706 5.35677 5.37830 5.55950 5.67332 5.81288 6.05543 6.11066 6.59759 6.70964 6.73176 6.76977 7.23435 7.38485 8.85665 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.002430 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.744969 B =11519.902280 C =12074.956510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.499 3.501 14 O -0.576 6.576 15 C 0.063 3.937 16 O -0.350 6.350 17 C 0.461 3.539 18 O -0.527 6.527 19 C -0.023 4.023 20 C -0.254 4.254 21 C 0.056 3.944 22 N -0.335 5.335 23 N -0.379 5.379 24 C 0.090 3.910 25 C 0.103 3.897 26 C -0.095 4.095 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.028 0.972 33 H 0.000 1.000 34 H 0.267 0.733 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.199 0.801 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 -9.165 24.841 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.329 5.329 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.014 4.014 16 O -0.266 6.266 17 C 0.305 3.695 18 O -0.416 6.416 19 C -0.061 4.061 20 C -0.266 4.266 21 C -0.129 4.129 22 N -0.156 5.156 23 N -0.161 5.161 24 C -0.049 4.049 25 C -0.026 4.026 26 C -0.153 4.153 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.046 0.954 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.216 0.784 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.227 -9.449 25.864 27.563 hybrid contribution 0.773 0.369 -1.536 1.759 sum -0.454 -9.080 24.327 25.971 Atomic orbital electron populations 1.22176 0.94446 1.03703 1.01817 1.21842 0.95464 0.81082 1.04314 1.48212 1.63685 1.15204 1.05765 1.18793 0.95619 0.91677 0.79781 1.21723 0.97753 1.32072 1.06537 0.92702 1.25866 1.02437 0.94463 0.96432 1.70056 1.37711 1.34169 1.14831 0.85347 0.78958 0.78012 0.78369 1.19007 1.19519 1.20771 1.20577 0.78272 0.86654 0.85836 1.90674 1.47049 1.20113 1.87751 1.22737 1.04334 0.92098 0.82189 1.86594 1.79118 1.45570 1.15279 1.24638 0.73399 0.87346 0.84079 1.90638 1.43130 1.21171 1.86622 1.19617 1.06767 0.96577 0.83132 1.19316 0.96243 1.09550 1.01475 1.24104 0.99062 0.97501 0.92212 1.77289 0.98675 1.15390 1.24247 1.48703 1.10685 1.35497 1.21216 1.22177 1.00013 0.90916 0.91837 1.21322 0.97396 0.95150 0.88727 1.20620 0.88316 1.03921 1.02470 0.88506 0.92501 0.93653 0.90013 0.88515 0.95356 0.98198 0.92381 0.86794 0.86588 0.84734 0.85098 0.78385 0.89086 0.89166 0.87340 0.87681 0.89260 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.24 71.98 0.74 -3.32 16 2 C 0.09 2.86 5.93 86.38 0.51 3.37 16 3 N -0.60 -25.19 2.46 -826.15 -2.03 -27.21 16 4 C 0.26 14.05 5.16 85.63 0.44 14.49 16 5 C -0.54 -31.00 9.39 25.60 0.24 -30.76 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 9 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.50 21.23 7.75 87.66 0.68 21.91 16 14 O -0.58 -30.57 16.08 15.78 0.25 -30.32 16 15 C 0.06 1.96 4.50 71.24 0.32 2.28 16 16 O -0.35 -10.98 9.76 -45.12 -0.44 -11.42 16 17 C 0.46 11.90 7.95 71.23 0.57 12.47 16 18 O -0.53 -15.69 15.78 21.98 0.35 -15.34 16 19 C -0.02 -0.41 5.85 29.10 0.17 -0.24 16 20 C -0.25 -5.15 4.59 -20.14 -0.09 -5.24 16 21 C 0.06 1.21 11.96 85.24 1.02 2.23 16 22 N -0.34 -7.98 12.57 -57.02 -0.72 -8.70 16 23 N -0.38 -7.22 4.01 -356.03 -1.43 -8.65 16 24 C 0.09 0.88 11.27 127.77 1.44 2.32 16 25 C 0.10 1.90 6.93 41.41 0.29 2.18 16 26 C -0.10 -1.10 9.80 71.24 0.70 -0.41 16 27 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 2.56 8.07 -2.39 -0.02 2.54 16 31 H 0.10 2.30 6.44 -2.39 -0.02 2.28 16 32 H 0.03 1.53 8.07 -2.38 -0.02 1.51 16 33 H 0.00 -0.01 7.42 -2.39 -0.02 -0.02 16 34 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.11 3.06 7.39 -2.39 -0.02 3.05 16 36 H 0.12 3.07 7.18 -2.39 -0.02 3.05 16 37 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.13 1.84 8.01 -2.39 -0.02 1.82 16 39 H 0.20 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.11 0.54 7.05 -2.38 -0.02 0.52 16 43 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.09 0.73 7.07 -2.39 -0.02 0.71 16 45 H 0.08 1.06 7.89 -2.39 -0.02 1.04 16 Total: -1.00 -84.15 386.44 6.77 -77.37 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.99 Total: 11.08 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 7.48 Total: 22.15 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -3.89 Total: -100.08 kcal Atomic # 8 Polarization: -57.24 SS G_CDS: 0.16 Total: -57.08 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -84.15 6.77 -77.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795864859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.427 kcal (2) G-P(sol) polarization free energy of solvation -84.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds