Wall clock time and date at job start Tue Mar 31 2020 14:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47144 * 2 1 4 4 C 1.46501 * 120.00223 * 270.00461 * 3 2 1 5 5 C 1.50698 * 109.46903 * 269.99964 * 4 3 2 6 6 H 1.08004 * 120.00342 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99906 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00339 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00250 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47491 * 89.99545 * 9 7 5 11 11 H 1.48497 * 109.47580 * 209.99856 * 9 7 5 12 12 H 1.48506 * 109.46645 * 329.99712 * 9 7 5 13 13 C 1.34780 * 120.00041 * 90.00355 * 3 2 1 14 14 O 1.21280 * 120.00101 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99748 * 359.97438 * 13 3 2 16 16 O 1.45201 * 109.47080 * 180.02562 * 15 13 3 17 17 C 1.34788 * 117.00169 * 180.02562 * 16 15 13 18 18 O 1.21549 * 119.99754 * 0.02562 * 17 16 15 19 19 C 1.47172 * 120.00139 * 179.97438 * 17 16 15 20 20 C 1.36503 * 126.24280 * 179.97438 * 19 17 16 21 21 N 1.35334 * 106.86209 * 180.02562 * 20 19 17 22 22 C 1.46506 * 126.12665 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47289 * 119.99510 * 22 21 20 24 24 C 1.52992 * 109.46999 * 239.99978 * 22 21 20 25 25 C 1.35860 * 107.74813 * 0.26061 * 21 20 19 26 26 N 1.30160 * 109.01980 * 359.55887 * 25 21 20 27 27 H 1.09002 * 109.46892 * 299.99107 * 1 2 3 28 28 H 1.08998 * 109.47450 * 59.99629 * 1 2 3 29 29 H 1.09010 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46655 * 240.00425 * 2 1 3 31 31 H 1.09002 * 109.47200 * 120.00816 * 2 1 3 32 32 H 1.08998 * 109.47474 * 29.99806 * 4 3 2 33 33 H 1.08996 * 109.47587 * 150.00110 * 4 3 2 34 34 H 0.97005 * 120.00857 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47112 * 60.00369 * 15 13 3 36 36 H 1.08995 * 109.47322 * 300.00287 * 15 13 3 37 37 H 1.08000 * 126.57092 * 0.03598 * 20 19 17 38 38 H 1.08998 * 109.46566 * 359.97438 * 22 21 20 39 39 H 1.09002 * 109.47153 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.46832 * 60.00146 * 23 22 21 41 41 H 1.09004 * 109.47261 * 300.00128 * 23 22 21 42 42 H 1.09001 * 109.47066 * 299.99819 * 24 22 21 43 43 H 1.08996 * 109.47747 * 59.99485 * 24 22 21 44 44 H 1.09002 * 109.47103 * 179.97438 * 24 22 21 45 45 H 1.07998 * 125.49304 * 179.71629 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6856 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0959 7 6 4.1492 2.3906 -2.8775 8 7 3.3493 3.1267 -3.6176 9 14 5.9132 2.0965 -3.4172 10 1 5.9759 0.8760 -4.2609 11 1 6.3928 3.2641 -4.1995 12 1 6.7734 1.9156 -2.2203 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 8 2.3055 2.1959 3.5759 17 6 2.1338 1.7102 4.8215 18 8 1.7329 0.5738 4.9807 19 6 2.4328 2.5553 5.9887 20 6 2.3052 2.1958 7.2993 21 7 2.6829 3.2648 8.0382 22 6 2.7088 3.3379 9.5012 23 6 4.1357 3.6262 9.9723 24 6 1.7799 4.4586 9.9723 25 6 3.0288 4.2599 7.1803 26 7 2.8854 3.8353 5.9583 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6752 3.5173 -4.4435 35 1 2.6213 0.4185 2.5302 36 1 0.9433 1.0124 2.5299 37 1 1.9677 1.2410 7.6747 38 1 2.3730 2.3886 9.9183 39 1 4.1548 3.6811 11.0607 40 1 4.4711 4.5757 9.5550 41 1 4.7975 2.8278 9.6366 42 1 2.1154 5.4080 9.5551 43 1 0.7635 4.2532 9.6367 44 1 1.7988 4.5127 11.0608 45 1 3.3703 5.2437 7.4661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811215270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:06 Heat of formation + Delta-G solvation = -57.129712 kcal Electronic energy + Delta-G solvation = -26806.722687 eV Core-core repulsion = 22826.017763 eV Total energy + Delta-G solvation = -3980.704924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.56496 -40.11129 -38.75403 -36.55214 -36.13436 -35.17665 -32.77117 -31.58484 -30.24451 -30.05528 -28.89076 -27.99452 -26.51205 -24.15200 -23.51008 -22.98663 -22.36242 -20.86049 -20.24648 -18.56274 -17.87697 -17.18545 -16.65871 -16.46062 -16.30425 -15.75376 -15.68998 -15.30341 -14.88996 -14.50744 -14.38486 -14.25519 -14.09182 -13.62527 -13.38020 -13.18651 -12.95834 -12.90615 -12.74807 -12.37084 -12.09922 -11.99990 -11.96749 -11.89554 -11.54100 -11.15922 -10.87224 -10.78843 -10.69831 -10.51249 -10.39562 -10.31987 -10.11130 -10.07801 -9.58514 -8.95116 -8.85953 -8.38373 -7.65004 -5.99194 -4.03611 1.20866 2.10924 2.12812 2.71874 3.28507 3.34647 3.39168 3.41845 3.47912 3.86742 3.96161 4.19472 4.24084 4.33517 4.38520 4.50168 4.83776 4.88539 4.93302 5.00341 5.02122 5.06163 5.14600 5.29527 5.34068 5.35351 5.35899 5.45655 5.47083 5.67238 5.74119 5.81603 6.05914 6.09461 6.26600 6.46644 6.52585 6.69440 7.08690 7.48553 7.51042 7.57800 7.94567 7.98308 8.28105 8.40361 8.94183 9.10174 9.61118 11.08947 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018218 B = 0.002427 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.584367 B =11533.045770 C =12449.711679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.594 5.594 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.514 6.514 15 C 0.049 3.951 16 O -0.309 6.309 17 C 0.554 3.446 18 O -0.519 6.519 19 C -0.045 4.045 20 C 0.045 3.955 21 N -0.452 5.452 22 C 0.125 3.875 23 C -0.165 4.165 24 C -0.165 4.165 25 C 0.187 3.813 26 N -0.434 5.434 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.191 0.809 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 -2.969 29.249 29.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.328 5.328 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.389 6.389 15 C -0.029 4.029 16 O -0.222 6.222 17 C 0.398 3.602 18 O -0.408 6.408 19 C -0.172 4.172 20 C -0.095 4.095 21 N -0.135 5.135 22 C 0.022 3.978 23 C -0.223 4.223 24 C -0.223 4.223 25 C -0.097 4.097 26 N -0.152 5.152 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.208 0.792 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.311 -2.099 28.450 28.851 hybrid contribution 0.752 -0.801 0.286 1.136 sum -3.559 -2.901 28.735 29.100 Atomic orbital electron populations 1.22238 0.96628 1.01597 1.02416 1.21492 0.93697 0.84046 1.02957 1.48193 1.64142 1.13377 1.07102 1.19312 0.96389 0.93747 0.77615 1.21445 0.96900 1.31885 1.06251 0.92395 1.24934 0.97880 0.94904 0.96418 1.69932 1.35695 1.33444 1.14326 0.86487 0.84707 0.77608 0.78575 1.20682 1.21099 1.19863 1.19706 0.79754 0.87186 0.84260 1.90734 1.44064 1.17411 1.86652 1.22982 1.02605 0.92689 0.84582 1.86747 1.77998 1.43851 1.13589 1.19684 0.73683 0.84187 0.82598 1.90841 1.44271 1.18780 1.86939 1.19341 1.13809 0.93702 0.90362 1.22512 1.02575 0.93789 0.90597 1.45781 1.48127 1.11644 1.07940 1.21612 0.98095 1.02051 0.75993 1.22202 0.94230 1.03379 1.02483 1.22201 0.99604 0.97989 1.02496 1.25223 1.04580 0.96087 0.83774 1.70865 1.14672 1.08995 1.20623 0.93095 0.91839 0.91973 0.89509 0.91747 0.94679 0.93706 0.92736 0.88704 0.88786 0.79183 0.87743 0.90112 0.91240 0.91432 0.91238 0.91449 0.90112 0.77209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.24 37.16 0.38 -2.01 16 2 C 0.10 1.70 5.93 -4.05 -0.02 1.68 16 3 N -0.59 -13.13 2.46 -175.07 -0.43 -13.56 16 4 C 0.25 6.65 5.16 -5.19 -0.03 6.62 16 5 C -0.53 -15.28 9.39 -34.44 -0.32 -15.61 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 9 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.51 11.56 7.75 -10.98 -0.09 11.48 16 14 O -0.51 -14.27 16.08 -14.10 -0.23 -14.49 16 15 C 0.05 0.89 4.51 36.00 0.16 1.05 16 16 O -0.31 -6.12 9.77 -47.42 -0.46 -6.58 16 17 C 0.55 9.47 7.95 34.36 0.27 9.74 16 18 O -0.52 -8.81 16.67 -19.30 -0.32 -9.13 16 19 C -0.04 -0.66 7.01 -83.11 -0.58 -1.24 16 20 C 0.04 0.45 11.22 -16.63 -0.19 0.26 16 21 N -0.45 -3.48 2.59 -111.24 -0.29 -3.77 16 22 C 0.12 0.46 3.56 -67.93 -0.24 0.21 16 23 C -0.17 -0.47 9.25 37.16 0.34 -0.13 16 24 C -0.17 -0.45 9.24 37.15 0.34 -0.11 16 25 C 0.19 1.83 11.52 -89.91 -1.04 0.80 16 26 N -0.43 -6.55 11.33 -11.05 -0.13 -6.68 16 27 H 0.05 0.69 7.22 -51.93 -0.37 0.32 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 31 H 0.06 0.91 6.44 -51.93 -0.33 0.58 16 32 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.04 1.36 7.42 -51.93 -0.39 0.97 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.10 1.54 7.40 -51.93 -0.38 1.15 16 36 H 0.09 1.47 7.18 -51.93 -0.37 1.10 16 37 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.10 0.24 8.07 -51.93 -0.42 -0.18 16 39 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 40 H 0.07 0.20 7.94 -51.93 -0.41 -0.21 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.19 7.93 -51.93 -0.41 -0.22 16 43 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 45 H 0.21 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -38.92 388.07 -8.25 -47.18 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -6.86 Total: -4.27 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: -1.10 Total: 14.43 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.11 Total: -50.36 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -1.01 Total: -30.21 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.92 -8.25 -47.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811215270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.952 kcal (2) G-P(sol) polarization free energy of solvation -38.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds