Wall clock time and date at job start Tue Mar 31 2020 14:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47144 * 2 1 4 4 C 1.46501 * 120.00223 * 270.00461 * 3 2 1 5 5 C 1.50698 * 109.46903 * 269.99964 * 4 3 2 6 6 H 1.08004 * 120.00342 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99906 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00339 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00250 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47491 * 89.99545 * 9 7 5 11 11 H 1.48497 * 109.47580 * 209.99856 * 9 7 5 12 12 H 1.48506 * 109.46645 * 329.99712 * 9 7 5 13 13 C 1.34780 * 120.00041 * 90.00355 * 3 2 1 14 14 O 1.21280 * 120.00101 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99748 * 359.97438 * 13 3 2 16 16 O 1.45201 * 109.47080 * 180.02562 * 15 13 3 17 17 C 1.34788 * 117.00169 * 180.02562 * 16 15 13 18 18 O 1.21549 * 119.99754 * 0.02562 * 17 16 15 19 19 C 1.47172 * 120.00139 * 179.97438 * 17 16 15 20 20 C 1.36503 * 126.24280 * 179.97438 * 19 17 16 21 21 N 1.35334 * 106.86209 * 180.02562 * 20 19 17 22 22 C 1.46506 * 126.12665 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47289 * 119.99510 * 22 21 20 24 24 C 1.52992 * 109.46999 * 239.99978 * 22 21 20 25 25 C 1.35860 * 107.74813 * 0.26061 * 21 20 19 26 26 N 1.30160 * 109.01980 * 359.55887 * 25 21 20 27 27 H 1.09002 * 109.46892 * 299.99107 * 1 2 3 28 28 H 1.08998 * 109.47450 * 59.99629 * 1 2 3 29 29 H 1.09010 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46655 * 240.00425 * 2 1 3 31 31 H 1.09002 * 109.47200 * 120.00816 * 2 1 3 32 32 H 1.08998 * 109.47474 * 29.99806 * 4 3 2 33 33 H 1.08996 * 109.47587 * 150.00110 * 4 3 2 34 34 H 0.97005 * 120.00857 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47112 * 60.00369 * 15 13 3 36 36 H 1.08995 * 109.47322 * 300.00287 * 15 13 3 37 37 H 1.08000 * 126.57092 * 0.03598 * 20 19 17 38 38 H 1.08998 * 109.46566 * 359.97438 * 22 21 20 39 39 H 1.09002 * 109.47153 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.46832 * 60.00146 * 23 22 21 41 41 H 1.09004 * 109.47261 * 300.00128 * 23 22 21 42 42 H 1.09001 * 109.47066 * 299.99819 * 24 22 21 43 43 H 1.08996 * 109.47747 * 59.99485 * 24 22 21 44 44 H 1.09002 * 109.47103 * 179.97438 * 24 22 21 45 45 H 1.07998 * 125.49304 * 179.71629 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6856 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0959 7 6 4.1492 2.3906 -2.8775 8 7 3.3493 3.1267 -3.6176 9 14 5.9132 2.0965 -3.4172 10 1 5.9759 0.8760 -4.2609 11 1 6.3928 3.2641 -4.1995 12 1 6.7734 1.9156 -2.2203 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 8 2.3055 2.1959 3.5759 17 6 2.1338 1.7102 4.8215 18 8 1.7329 0.5738 4.9807 19 6 2.4328 2.5553 5.9887 20 6 2.3052 2.1958 7.2993 21 7 2.6829 3.2648 8.0382 22 6 2.7088 3.3379 9.5012 23 6 4.1357 3.6262 9.9723 24 6 1.7799 4.4586 9.9723 25 6 3.0288 4.2599 7.1803 26 7 2.8854 3.8353 5.9583 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6752 3.5173 -4.4435 35 1 2.6213 0.4185 2.5302 36 1 0.9433 1.0124 2.5299 37 1 1.9677 1.2410 7.6747 38 1 2.3730 2.3886 9.9183 39 1 4.1548 3.6811 11.0607 40 1 4.4711 4.5757 9.5550 41 1 4.7975 2.8278 9.6366 42 1 2.1154 5.4080 9.5551 43 1 0.7635 4.2532 9.6367 44 1 1.7988 4.5127 11.0608 45 1 3.3703 5.2437 7.4661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811215270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:05 Heat of formation + Delta-G solvation = -81.502104 kcal Electronic energy + Delta-G solvation = -26807.779553 eV Core-core repulsion = 22826.017763 eV Total energy + Delta-G solvation = -3981.761790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.35232 -41.51073 -40.44056 -37.57544 -36.99541 -36.95092 -34.93859 -32.23881 -31.76039 -31.20983 -30.35848 -28.39974 -28.18461 -25.42866 -24.62963 -24.09261 -23.98525 -21.60932 -21.28503 -20.25413 -18.80708 -18.60250 -18.30333 -17.89214 -17.75469 -17.25188 -16.82104 -16.54262 -16.16258 -15.85585 -15.40411 -15.14526 -14.87601 -14.82341 -14.69724 -14.52234 -14.06487 -13.80621 -13.76041 -13.58793 -13.28073 -13.20166 -13.10441 -13.07213 -12.67954 -12.50716 -12.38141 -12.22306 -12.15780 -12.04689 -11.94463 -11.78174 -11.71676 -11.17722 -10.85679 -10.72653 -10.64308 -9.80660 -9.54383 -8.23204 -6.37715 0.23837 1.19169 1.24472 1.35944 1.39730 1.49870 1.62127 1.71735 2.24539 2.33758 2.46622 3.06434 3.33335 3.44980 3.57338 3.75564 3.84547 3.94427 3.97589 4.04998 4.14170 4.16057 4.27870 4.38928 4.59851 4.60974 4.69714 4.83737 4.84729 4.88358 4.95031 4.99589 5.02821 5.12639 5.20017 5.23913 5.27312 5.36843 5.41328 5.54587 5.80258 6.02172 6.04366 6.47266 6.62353 6.71177 6.91401 7.21860 7.36916 8.84374 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018218 B = 0.002427 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.584367 B =11533.045770 C =12449.711679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.498 3.502 14 O -0.578 6.578 15 C 0.062 3.938 16 O -0.341 6.341 17 C 0.551 3.449 18 O -0.525 6.525 19 C -0.098 4.098 20 C 0.077 3.923 21 N -0.440 5.440 22 C 0.120 3.880 23 C -0.163 4.163 24 C -0.163 4.163 25 C 0.200 3.800 26 N -0.499 5.499 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.032 0.968 33 H -0.003 1.003 34 H 0.268 0.732 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.221 0.779 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.103 0.897 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 -4.764 32.164 32.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.200 1.200 13 C 0.285 3.715 14 O -0.458 6.458 15 C -0.015 4.015 16 O -0.256 6.256 17 C 0.398 3.602 18 O -0.415 6.415 19 C -0.223 4.223 20 C -0.066 4.066 21 N -0.121 5.121 22 C 0.020 3.980 23 C -0.221 4.221 24 C -0.220 4.220 25 C -0.085 4.085 26 N -0.217 5.217 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.050 0.950 33 H 0.015 0.985 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.237 0.763 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.121 0.879 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -4.038 -3.951 31.399 31.903 hybrid contribution 0.622 -0.203 -0.478 0.810 sum -3.415 -4.155 30.921 31.385 Atomic orbital electron populations 1.22180 0.94277 1.03849 1.01793 1.21882 0.95618 0.80880 1.04453 1.48205 1.63685 1.15321 1.05531 1.18791 0.95678 0.91582 0.79744 1.21697 0.97792 1.32219 1.06624 0.92866 1.25876 1.02541 0.94390 0.96402 1.70049 1.37811 1.34056 1.14780 0.85388 0.78791 0.78313 0.78142 1.18503 1.20535 1.20019 1.20556 0.78356 0.86636 0.85904 1.90691 1.47033 1.20319 1.87739 1.22861 1.04742 0.92001 0.81910 1.86742 1.78843 1.45097 1.14940 1.20116 0.73338 0.84635 0.82150 1.90801 1.45008 1.18913 1.86823 1.19389 1.17645 0.94259 0.91021 1.22889 0.99693 0.94865 0.89112 1.46113 1.46215 1.10302 1.09492 1.22020 0.99091 1.03689 0.73183 1.22213 0.93141 1.02810 1.03900 1.22210 0.98527 0.97400 1.03898 1.25744 1.02675 0.97239 0.82858 1.70749 1.17153 1.10010 1.23776 0.92557 0.93680 0.88182 0.89828 0.88414 0.95030 0.98480 0.92326 0.86328 0.85872 0.76274 0.85652 0.87842 0.91363 0.92640 0.91337 0.92544 0.87859 0.74090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 10.24 71.98 0.74 -3.55 16 2 C 0.09 3.01 5.93 86.38 0.51 3.52 16 3 N -0.59 -27.03 2.46 -826.18 -2.03 -29.05 16 4 C 0.26 14.83 5.16 85.63 0.44 15.27 16 5 C -0.54 -32.66 9.39 25.60 0.24 -32.42 16 6 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 7 C 0.01 0.41 5.46 84.66 0.46 0.88 16 8 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 9 Si 0.97 46.46 29.54 68.60 2.03 48.48 16 10 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 C 0.50 23.60 7.75 87.66 0.68 24.27 16 14 O -0.58 -34.22 16.08 15.77 0.25 -33.97 16 15 C 0.06 2.23 4.51 71.24 0.32 2.55 16 16 O -0.34 -13.97 9.77 -50.60 -0.49 -14.47 16 17 C 0.55 19.03 7.95 70.17 0.56 19.59 16 18 O -0.53 -17.35 16.67 19.68 0.33 -17.02 16 19 C -0.10 -2.88 7.01 40.47 0.28 -2.59 16 20 C 0.08 1.41 11.22 83.75 0.94 2.35 16 21 N -0.44 -5.82 2.59 -505.85 -1.31 -7.13 16 22 C 0.12 0.49 3.56 44.99 0.16 0.65 16 23 C -0.16 -0.43 9.25 71.98 0.67 0.24 16 24 C -0.16 -0.39 9.24 71.98 0.66 0.28 16 25 C 0.20 3.71 11.52 180.10 2.08 5.78 16 26 N -0.50 -15.38 11.33 -188.87 -2.14 -17.52 16 27 H 0.06 1.42 7.22 -2.39 -0.02 1.41 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.08 2.76 8.07 -2.38 -0.02 2.74 16 31 H 0.10 2.51 6.44 -2.39 -0.02 2.50 16 32 H 0.03 1.78 8.07 -2.39 -0.02 1.76 16 33 H 0.00 -0.19 7.42 -2.39 -0.02 -0.21 16 34 H 0.27 15.55 8.31 -92.70 -0.77 14.77 16 35 H 0.12 3.68 7.40 -2.39 -0.02 3.67 16 36 H 0.12 3.68 7.18 -2.39 -0.02 3.67 16 37 H 0.22 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.13 0.06 8.07 -2.39 -0.02 0.04 16 39 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.07 0.22 7.94 -2.39 -0.02 0.20 16 41 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 42 H 0.07 0.20 7.93 -2.39 -0.02 0.18 16 43 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.24 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -91.29 388.07 6.64 -84.65 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.98 Total: 6.54 kcal Atomic # 6 Polarization: 28.07 SS G_CDS: 8.74 Total: 36.82 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -5.19 Total: -111.03 kcal Atomic # 8 Polarization: -65.54 SS G_CDS: 0.09 Total: -65.46 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -91.29 6.64 -84.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811215270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.146 kcal (2) G-P(sol) polarization free energy of solvation -91.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds