Wall clock time and date at job start Tue Mar 31 2020 14:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46950 * 2 1 4 4 N 1.46501 * 109.46805 * 119.99767 * 2 1 3 5 5 C 1.35864 * 126.12874 * 299.95683 * 4 2 1 6 6 N 1.30157 * 109.01525 * 179.79947 * 5 4 2 7 7 C 1.35795 * 108.86074 * 0.38216 * 6 5 4 8 8 C 1.47175 * 126.24300 * 179.88429 * 7 6 5 9 9 O 1.21543 * 119.99629 * 179.69134 * 8 7 6 10 10 O 1.34786 * 120.00026 * 359.68422 * 8 7 6 11 11 C 1.45198 * 116.99773 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.47206 * 30.01008 * 11 10 8 13 13 C 1.52996 * 109.47742 * 270.00663 * 11 10 8 14 14 C 1.50706 * 109.47101 * 150.00578 * 11 10 8 15 15 O 1.21281 * 119.99699 * 5.00057 * 14 11 10 16 16 N 1.34773 * 120.00080 * 185.00548 * 14 11 10 17 17 C 1.46499 * 120.00036 * 359.72107 * 16 14 11 18 18 C 1.46506 * 119.99969 * 180.02562 * 16 14 11 19 19 C 1.50703 * 109.46877 * 269.72057 * 18 16 14 20 20 H 1.08005 * 119.99817 * 0.02562 * 19 18 16 21 21 C 1.37871 * 120.00081 * 179.97438 * 19 18 16 22 22 N 1.31520 * 119.99848 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00321 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46844 * 60.00490 * 23 21 19 25 25 H 1.48496 * 109.47153 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47045 * 300.00555 * 23 21 19 27 27 C 1.35327 * 126.12387 * 120.00313 * 4 2 1 28 28 H 1.09005 * 109.47013 * 300.00147 * 1 2 3 29 29 H 1.09005 * 109.46810 * 59.99792 * 1 2 3 30 30 H 1.08993 * 109.47384 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47204 * 240.00124 * 2 1 3 32 32 H 1.09005 * 109.46733 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47279 * 299.99387 * 3 2 1 34 34 H 1.09005 * 109.47383 * 60.00079 * 3 2 1 35 35 H 1.07997 * 125.49236 * 0.03846 * 5 4 2 36 36 H 1.09007 * 109.47052 * 300.00440 * 13 11 10 37 37 H 1.09002 * 109.46967 * 59.99917 * 13 11 10 38 38 H 1.08996 * 109.47639 * 180.02562 * 13 11 10 39 39 H 1.09003 * 109.47269 * 270.27384 * 17 16 14 40 40 H 1.08994 * 109.47173 * 30.28203 * 17 16 14 41 41 H 1.09005 * 109.47077 * 150.28374 * 17 16 14 42 42 H 1.09000 * 109.46803 * 29.71536 * 18 16 14 43 43 H 1.09000 * 109.47214 * 149.72329 * 18 16 14 44 44 H 0.96998 * 119.99944 * 179.97438 * 22 21 19 45 45 H 1.08004 * 126.56857 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7686 -0.3361 2.4838 6 7 2.3600 -1.1805 3.2784 7 6 3.0175 -2.1022 2.5287 8 6 3.8143 -3.2300 3.0379 9 8 4.3528 -3.9935 2.2606 10 8 3.9470 -3.4159 4.3663 11 6 4.7467 -4.5488 4.7967 12 1 5.5182 -4.7520 4.0539 13 6 3.8490 -5.7783 4.9491 14 6 5.3944 -4.2326 6.1202 15 8 5.1302 -3.1964 6.6924 16 7 6.2673 -5.1012 6.6678 17 6 6.5819 -6.3556 5.9795 18 6 6.8966 -4.7941 7.9547 19 6 8.1844 -4.0477 7.7187 20 1 8.5020 -3.8242 6.7109 21 6 8.9565 -3.6494 8.7892 22 7 8.5693 -3.9212 10.0164 23 14 10.5531 -2.7249 8.4968 24 1 10.2675 -1.4613 7.7707 25 1 11.1908 -2.4135 9.8011 26 1 11.4703 -3.5653 7.6859 27 6 2.7995 -1.7954 1.2166 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.1722 0.5078 2.7974 36 1 3.0775 -5.5751 5.6918 37 1 3.3805 -6.0070 3.9918 38 1 4.4493 -6.6287 5.2726 39 1 5.8847 -7.1302 6.2990 40 1 6.4956 -6.2107 4.9027 41 1 7.5996 -6.6594 6.2249 42 1 6.2233 -4.1777 8.5504 43 1 7.1067 -5.7218 8.4870 44 1 9.1127 -3.6413 10.7696 45 1 3.1783 -2.3316 0.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811216335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:31 Heat of formation + Delta-G solvation = -51.978791 kcal Electronic energy + Delta-G solvation = -27155.388237 eV Core-core repulsion = 23174.906674 eV Total energy + Delta-G solvation = -3980.481563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.54482 -40.25796 -38.72336 -36.54163 -36.12327 -34.79850 -32.80607 -31.70752 -31.31169 -29.91488 -27.97936 -27.62282 -26.08093 -24.95256 -23.79115 -23.48770 -22.09564 -20.84061 -20.14730 -18.71533 -17.91725 -17.20051 -16.56416 -16.44277 -16.15618 -15.69178 -15.41849 -15.29584 -14.84436 -14.52034 -14.46823 -14.23365 -14.01545 -13.64962 -13.34127 -13.13836 -12.93096 -12.87204 -12.69571 -12.27525 -12.09213 -12.06072 -11.96179 -11.88049 -11.56892 -11.27439 -11.11991 -10.86618 -10.66202 -10.56513 -10.45221 -10.30342 -10.10983 -10.08999 -9.59596 -8.93149 -8.76685 -8.38353 -7.62751 -5.99497 -4.04093 1.23694 2.12756 2.15491 2.74968 3.31131 3.36368 3.40143 3.40692 3.46481 3.88437 3.97814 4.21026 4.25415 4.34101 4.40228 4.49719 4.85065 4.86387 4.94744 4.97058 5.03592 5.07217 5.11231 5.20304 5.22818 5.34940 5.36582 5.47392 5.63080 5.74908 5.76073 5.78825 5.94204 6.08603 6.14580 6.30725 6.54717 6.71770 7.07230 7.47609 7.52765 7.57099 7.95899 8.00087 8.27563 8.39703 8.93677 9.10036 9.60598 11.08621 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.002610 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.565362 B =10723.920858 C =11632.456357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 C -0.166 4.166 4 N -0.452 5.452 5 C 0.187 3.813 6 N -0.435 5.435 7 C -0.044 4.044 8 C 0.554 3.446 9 O -0.518 6.518 10 O -0.304 6.304 11 C 0.069 3.931 12 H 0.105 0.895 13 C -0.169 4.169 14 C 0.508 3.492 15 O -0.515 6.515 16 N -0.598 5.598 17 C 0.077 3.923 18 C 0.247 3.753 19 C -0.527 4.527 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.044 3.956 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.211 0.789 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.036 0.964 44 H 0.264 0.736 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.926 4.126 -23.667 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 C -0.223 4.223 4 N -0.135 5.135 5 C -0.097 4.097 6 N -0.152 5.152 7 C -0.171 4.171 8 C 0.399 3.601 9 O -0.407 6.407 10 O -0.218 6.218 11 C 0.010 3.990 12 H 0.123 0.877 13 C -0.226 4.226 14 C 0.292 3.708 15 O -0.390 6.390 16 N -0.332 5.332 17 C -0.067 4.067 18 C 0.129 3.871 19 C -0.566 4.566 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.203 1.203 27 C -0.095 4.095 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.228 0.772 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -16.890 4.534 -22.550 28.536 hybrid contribution 1.063 0.397 -1.051 1.547 sum -15.827 4.931 -23.601 28.841 Atomic orbital electron populations 1.22199 0.92689 1.03568 1.03774 1.21612 0.95860 0.94311 0.85975 1.22207 1.02546 0.93812 1.03772 1.45767 1.37522 1.21649 1.08551 1.25209 1.04022 1.02152 0.78322 1.70844 1.09303 1.03090 1.31975 1.19350 1.08063 0.99724 0.89984 1.19689 0.77129 0.82148 0.81168 1.90824 1.46530 1.45504 1.57889 1.86796 1.64470 1.47262 1.23283 1.22649 0.94299 0.85136 0.96935 0.87726 1.22273 1.00663 0.96304 1.03381 1.19768 0.80381 0.84736 0.85872 1.90722 1.61672 1.24350 1.62209 1.48055 1.42406 1.18565 1.24150 1.21831 1.01978 0.86549 0.96334 1.19332 0.92792 0.96860 0.78165 1.21404 1.05528 1.36614 0.93075 0.92485 1.24930 0.98310 0.95915 0.94932 1.69926 1.38688 1.46779 0.97994 0.86546 0.83053 0.80451 0.77311 1.20154 1.21167 1.20254 1.22515 0.97210 0.90769 0.99015 0.91260 0.90126 0.91482 0.87746 0.91393 0.90113 0.91241 0.77231 0.90960 0.91357 0.89350 0.93206 0.92347 0.90383 0.93641 0.94649 0.92661 0.79197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.46 9.24 37.16 0.34 -0.12 16 2 C 0.12 0.49 3.57 -67.93 -0.24 0.25 16 3 C -0.17 -0.54 9.24 37.16 0.34 -0.19 16 4 N -0.45 -3.62 2.59 -111.24 -0.29 -3.91 16 5 C 0.19 1.87 11.52 -89.91 -1.04 0.83 16 6 N -0.43 -6.65 11.33 -11.05 -0.13 -6.77 16 7 C -0.04 -0.66 7.01 -83.11 -0.58 -1.24 16 8 C 0.55 9.77 7.93 34.36 0.27 10.04 16 9 O -0.52 -9.09 16.14 -19.30 -0.31 -9.40 16 10 O -0.30 -6.13 9.43 -47.39 -0.45 -6.57 16 11 C 0.07 1.28 2.17 -27.88 -0.06 1.22 16 12 H 0.11 1.84 6.16 -51.93 -0.32 1.52 16 13 C -0.17 -2.46 9.27 37.16 0.34 -2.12 16 14 C 0.51 11.80 7.10 -10.98 -0.08 11.72 16 15 O -0.51 -14.47 16.08 -14.05 -0.23 -14.70 16 16 N -0.60 -13.41 2.86 -182.95 -0.52 -13.93 16 17 C 0.08 1.27 8.92 59.85 0.53 1.80 16 18 C 0.25 6.69 5.17 -5.19 -0.03 6.67 16 19 C -0.53 -15.47 9.39 -34.44 -0.32 -15.79 16 20 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 21 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 23 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.04 0.46 11.22 -16.64 -0.19 0.28 16 28 H 0.07 0.20 7.94 -51.93 -0.41 -0.22 16 29 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.28 8.07 -51.93 -0.42 -0.14 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.07 0.23 7.94 -51.93 -0.41 -0.18 16 35 H 0.21 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.12 5.10 -51.93 -0.26 0.85 16 39 H 0.05 0.69 7.01 -51.93 -0.36 0.32 16 40 H 0.06 0.83 6.08 -51.93 -0.32 0.51 16 41 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 42 H 0.05 1.38 7.41 -51.93 -0.38 1.00 16 43 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.19 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -39.31 382.73 -7.89 -47.20 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.66 Total: -3.77 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: -0.80 Total: 15.04 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.20 Total: -51.05 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.98 Total: -30.68 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.31 -7.89 -47.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811216335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.780 kcal (2) G-P(sol) polarization free energy of solvation -39.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds