Wall clock time and date at job start Tue Mar 31 2020 14:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46950 * 2 1 4 4 N 1.46501 * 109.46805 * 119.99767 * 2 1 3 5 5 C 1.35864 * 126.12874 * 299.95683 * 4 2 1 6 6 N 1.30157 * 109.01525 * 179.79947 * 5 4 2 7 7 C 1.35795 * 108.86074 * 0.38216 * 6 5 4 8 8 C 1.47175 * 126.24300 * 179.88429 * 7 6 5 9 9 O 1.21543 * 119.99629 * 179.69134 * 8 7 6 10 10 O 1.34786 * 120.00026 * 359.68422 * 8 7 6 11 11 C 1.45198 * 116.99773 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.47206 * 30.01008 * 11 10 8 13 13 C 1.52996 * 109.47742 * 270.00663 * 11 10 8 14 14 C 1.50706 * 109.47101 * 150.00578 * 11 10 8 15 15 O 1.21281 * 119.99699 * 5.00057 * 14 11 10 16 16 N 1.34773 * 120.00080 * 185.00548 * 14 11 10 17 17 C 1.46499 * 120.00036 * 359.72107 * 16 14 11 18 18 C 1.46506 * 119.99969 * 180.02562 * 16 14 11 19 19 C 1.50703 * 109.46877 * 269.72057 * 18 16 14 20 20 H 1.08005 * 119.99817 * 0.02562 * 19 18 16 21 21 C 1.37871 * 120.00081 * 179.97438 * 19 18 16 22 22 N 1.31520 * 119.99848 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00321 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46844 * 60.00490 * 23 21 19 25 25 H 1.48496 * 109.47153 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47045 * 300.00555 * 23 21 19 27 27 C 1.35327 * 126.12387 * 120.00313 * 4 2 1 28 28 H 1.09005 * 109.47013 * 300.00147 * 1 2 3 29 29 H 1.09005 * 109.46810 * 59.99792 * 1 2 3 30 30 H 1.08993 * 109.47384 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47204 * 240.00124 * 2 1 3 32 32 H 1.09005 * 109.46733 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47279 * 299.99387 * 3 2 1 34 34 H 1.09005 * 109.47383 * 60.00079 * 3 2 1 35 35 H 1.07997 * 125.49236 * 0.03846 * 5 4 2 36 36 H 1.09007 * 109.47052 * 300.00440 * 13 11 10 37 37 H 1.09002 * 109.46967 * 59.99917 * 13 11 10 38 38 H 1.08996 * 109.47639 * 180.02562 * 13 11 10 39 39 H 1.09003 * 109.47269 * 270.27384 * 17 16 14 40 40 H 1.08994 * 109.47173 * 30.28203 * 17 16 14 41 41 H 1.09005 * 109.47077 * 150.28374 * 17 16 14 42 42 H 1.09000 * 109.46803 * 29.71536 * 18 16 14 43 43 H 1.09000 * 109.47214 * 149.72329 * 18 16 14 44 44 H 0.96998 * 119.99944 * 179.97438 * 22 21 19 45 45 H 1.08004 * 126.56857 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7686 -0.3361 2.4838 6 7 2.3600 -1.1805 3.2784 7 6 3.0175 -2.1022 2.5287 8 6 3.8143 -3.2300 3.0379 9 8 4.3528 -3.9935 2.2606 10 8 3.9470 -3.4159 4.3663 11 6 4.7467 -4.5488 4.7967 12 1 5.5182 -4.7520 4.0539 13 6 3.8490 -5.7783 4.9491 14 6 5.3944 -4.2326 6.1202 15 8 5.1302 -3.1964 6.6924 16 7 6.2673 -5.1012 6.6678 17 6 6.5819 -6.3556 5.9795 18 6 6.8966 -4.7941 7.9547 19 6 8.1844 -4.0477 7.7187 20 1 8.5020 -3.8242 6.7109 21 6 8.9565 -3.6494 8.7892 22 7 8.5693 -3.9212 10.0164 23 14 10.5531 -2.7249 8.4968 24 1 10.2675 -1.4613 7.7707 25 1 11.1908 -2.4135 9.8011 26 1 11.4703 -3.5653 7.6859 27 6 2.7995 -1.7954 1.2166 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.1722 0.5078 2.7974 36 1 3.0775 -5.5751 5.6918 37 1 3.3805 -6.0070 3.9918 38 1 4.4493 -6.6287 5.2726 39 1 5.8847 -7.1302 6.2990 40 1 6.4956 -6.2107 4.9027 41 1 7.5996 -6.6594 6.2249 42 1 6.2233 -4.1777 8.5504 43 1 7.1067 -5.7218 8.4870 44 1 9.1127 -3.6413 10.7696 45 1 3.1783 -2.3316 0.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811216335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:31 Heat of formation + Delta-G solvation = -77.259207 kcal Electronic energy + Delta-G solvation = -27156.484478 eV Core-core repulsion = 23174.906674 eV Total energy + Delta-G solvation = -3981.577804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.36161 -41.69883 -40.40633 -37.60020 -36.99063 -36.70871 -34.90832 -33.07883 -32.16708 -30.84529 -29.59474 -28.19030 -27.67202 -26.27489 -25.43166 -24.09827 -23.72785 -21.60551 -21.27164 -20.41816 -18.88913 -18.66283 -18.31015 -17.90775 -17.38776 -17.18864 -16.76598 -16.47168 -16.27872 -15.83803 -15.41399 -15.16803 -14.88445 -14.80757 -14.70647 -14.27353 -14.11037 -13.95373 -13.66811 -13.51800 -13.33809 -13.20495 -13.11581 -13.04065 -12.80920 -12.61420 -12.51996 -12.38729 -12.21100 -12.16479 -11.93684 -11.90112 -11.74039 -11.18727 -10.86130 -10.65669 -10.62357 -9.81632 -9.52652 -8.24359 -6.39129 0.22962 1.18609 1.25819 1.35001 1.40036 1.47114 1.61344 1.71847 2.23820 2.32301 2.44741 3.05168 3.31342 3.41142 3.55913 3.70237 3.75795 3.84727 3.93718 3.99674 4.13009 4.23609 4.35047 4.52444 4.60438 4.60698 4.69125 4.69151 4.82846 4.84270 4.86991 4.94166 4.98789 5.08009 5.15459 5.19593 5.25251 5.26768 5.40883 5.50541 5.77708 6.01746 6.02832 6.46607 6.60566 6.68934 6.90605 7.20135 7.35245 8.82958 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.002610 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.565362 B =10723.920858 C =11632.456357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 C -0.164 4.164 4 N -0.440 5.440 5 C 0.200 3.800 6 N -0.498 5.498 7 C -0.097 4.097 8 C 0.549 3.451 9 O -0.526 6.526 10 O -0.335 6.335 11 C 0.077 3.923 12 H 0.118 0.882 13 C -0.159 4.159 14 C 0.499 3.501 15 O -0.580 6.580 16 N -0.599 5.599 17 C 0.068 3.932 18 C 0.260 3.740 19 C -0.548 4.548 20 H 0.051 0.949 21 C 0.008 3.992 22 N -0.926 5.926 23 Si 0.968 3.032 24 H -0.281 1.281 25 H -0.275 1.275 26 H -0.258 1.258 27 C 0.075 3.925 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.125 0.875 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.244 0.756 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.076 0.924 42 H -0.002 1.002 43 H 0.036 0.964 44 H 0.269 0.731 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.185 4.179 -26.966 32.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 C -0.221 4.221 4 N -0.121 5.121 5 C -0.085 4.085 6 N -0.216 5.216 7 C -0.222 4.222 8 C 0.395 3.605 9 O -0.417 6.417 10 O -0.250 6.250 11 C 0.019 3.981 12 H 0.135 0.865 13 C -0.216 4.216 14 C 0.286 3.714 15 O -0.460 6.460 16 N -0.332 5.332 17 C -0.073 4.073 18 C 0.139 3.861 19 C -0.586 4.586 20 H 0.069 0.931 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.792 3.208 24 H -0.207 1.207 25 H -0.200 1.200 26 H -0.182 1.182 27 C -0.067 4.067 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.143 0.857 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.087 0.913 35 H 0.260 0.740 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.017 0.983 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -17.156 4.541 -25.900 31.397 hybrid contribution 1.047 0.453 -0.101 1.146 sum -16.109 4.993 -26.002 30.992 Atomic orbital electron populations 1.22204 0.91470 1.03300 1.04930 1.22024 0.96730 0.94531 0.84730 1.22221 1.01590 0.93381 1.04947 1.46101 1.36029 1.20663 1.09313 1.25761 1.02512 1.01538 0.78673 1.70728 1.11513 1.04891 1.34449 1.19389 1.10608 1.00478 0.91767 1.20172 0.77284 0.82880 0.80114 1.90779 1.47308 1.46100 1.57491 1.86794 1.64897 1.48109 1.25232 1.22601 0.95361 0.86261 0.93924 0.86474 1.22279 1.00069 0.94875 1.04384 1.20665 0.79870 0.83721 0.87177 1.90676 1.63856 1.27096 1.64333 1.48051 1.41622 1.20493 1.22988 1.22209 1.02955 0.84555 0.97610 1.18850 0.91362 0.95739 0.80102 1.21657 1.06519 1.37463 0.92990 0.93101 1.25860 1.02034 0.96599 0.94588 1.70039 1.40135 1.47499 0.98854 0.85464 0.78782 0.78746 0.77796 1.20681 1.19951 1.18247 1.22876 0.95388 0.90502 0.97975 0.91264 0.87871 0.92430 0.85742 0.92855 0.87782 0.91299 0.73974 0.91829 0.89291 0.86951 0.89636 0.89430 0.90472 0.98344 0.94626 0.92254 0.76415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.39 9.24 71.98 0.67 0.27 16 2 C 0.12 0.56 3.57 44.99 0.16 0.72 16 3 C -0.16 -0.59 9.24 71.98 0.67 0.08 16 4 N -0.44 -6.15 2.59 -505.84 -1.31 -7.46 16 5 C 0.20 3.81 11.52 180.10 2.08 5.88 16 6 N -0.50 -15.59 11.33 -188.87 -2.14 -17.74 16 7 C -0.10 -2.96 7.01 40.47 0.28 -2.67 16 8 C 0.55 19.76 7.93 70.17 0.56 20.32 16 9 O -0.53 -18.27 16.14 19.70 0.32 -17.95 16 10 O -0.34 -14.05 9.43 -50.60 -0.48 -14.53 16 11 C 0.08 2.88 2.17 29.85 0.06 2.95 16 12 H 0.12 4.05 6.16 -2.38 -0.01 4.03 16 13 C -0.16 -4.44 9.27 71.98 0.67 -3.77 16 14 C 0.50 24.06 7.10 87.66 0.62 24.68 16 15 O -0.58 -34.83 16.08 15.72 0.25 -34.57 16 16 N -0.60 -27.43 2.86 -851.11 -2.43 -29.86 16 17 C 0.07 2.14 8.92 127.77 1.14 3.28 16 18 C 0.26 14.71 5.17 85.63 0.44 15.15 16 19 C -0.55 -33.03 9.39 25.60 0.24 -32.79 16 20 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 21 C 0.01 0.50 5.46 84.65 0.46 0.97 16 22 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 23 Si 0.97 46.52 29.54 68.60 2.03 48.55 16 24 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 26 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 27 C 0.08 1.46 11.22 83.75 0.94 2.40 16 28 H 0.07 0.19 7.94 -2.38 -0.02 0.17 16 29 H 0.10 -0.16 8.14 -2.38 -0.02 -0.18 16 30 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.12 0.16 8.07 -2.39 -0.02 0.14 16 32 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.07 0.27 7.94 -2.38 -0.02 0.25 16 35 H 0.24 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.11 2.53 5.10 -2.39 -0.01 2.52 16 39 H 0.09 2.11 7.01 -2.39 -0.02 2.09 16 40 H 0.09 2.25 6.08 -2.39 -0.01 2.24 16 41 H 0.08 2.46 8.07 -2.38 -0.02 2.44 16 42 H 0.00 -0.10 7.41 -2.39 -0.02 -0.12 16 43 H 0.04 1.98 8.07 -2.39 -0.02 1.96 16 44 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.22 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -92.23 382.73 6.50 -85.73 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.99 Total: 7.53 kcal Atomic # 6 Polarization: 28.48 SS G_CDS: 8.98 Total: 37.47 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -5.60 Total: -112.23 kcal Atomic # 8 Polarization: -67.14 SS G_CDS: 0.09 Total: -67.05 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -92.23 6.50 -85.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811216335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.471 kcal (2) G-P(sol) polarization free energy of solvation -92.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds