Wall clock time and date at job start Tue Mar 31 2020 13:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47078 * 2 1 4 4 N 1.46498 * 109.46835 * 186.10279 * 3 2 1 5 5 N 1.39897 * 125.74276 * 294.22879 * 4 3 2 6 6 C 1.30306 * 109.20728 * 180.28255 * 5 4 3 7 7 C 1.41475 * 108.17069 * 359.74720 * 6 5 4 8 8 C 1.46747 * 126.51329 * 179.97438 * 7 6 5 9 9 O 1.21599 * 119.99956 * 180.02562 * 8 7 6 10 10 O 1.34827 * 120.00174 * 0.04490 * 8 7 6 11 11 C 1.45199 * 117.00074 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47320 * 180.02562 * 11 10 8 13 13 C 1.34767 * 125.74449 * 114.06437 * 4 3 2 14 14 N 1.38486 * 126.43016 * 359.97438 * 13 4 3 15 15 C 1.34775 * 119.99861 * 307.65303 * 14 13 4 16 16 O 1.21266 * 120.00210 * 358.99110 * 15 14 13 17 17 C 1.50700 * 119.99809 * 178.71400 * 15 14 13 18 18 C 1.52996 * 109.47230 * 180.27867 * 17 15 14 19 19 C 1.50700 * 109.47230 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00121 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99986 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00104 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99991 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47520 * 90.00118 * 23 21 19 25 25 H 1.48503 * 109.47282 * 210.00201 * 23 21 19 26 26 H 1.48505 * 109.47200 * 330.00007 * 23 21 19 27 27 H 1.09000 * 109.46972 * 299.99680 * 1 2 3 28 28 H 1.09000 * 109.46991 * 59.99789 * 1 2 3 29 29 H 1.09000 * 109.46776 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47213 * 240.00546 * 2 1 3 31 31 H 1.08996 * 109.47450 * 120.00384 * 2 1 3 32 32 H 1.09002 * 109.46806 * 66.10048 * 3 2 1 33 33 H 1.08999 * 109.47204 * 306.10416 * 3 2 1 34 34 H 1.08002 * 125.91855 * 179.77060 * 6 5 4 35 35 H 1.09005 * 109.47339 * 299.99917 * 11 10 8 36 36 H 1.08998 * 109.47291 * 59.99852 * 11 10 8 37 37 H 1.08998 * 109.47275 * 59.99578 * 12 11 10 38 38 H 1.08999 * 109.47329 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.46906 * 299.99711 * 12 11 10 40 40 H 0.96995 * 120.00153 * 127.65581 * 14 13 4 41 41 H 1.09003 * 109.47198 * 300.27833 * 17 15 14 42 42 H 1.09005 * 109.47377 * 60.27510 * 17 15 14 43 43 H 1.09003 * 109.47002 * 300.00086 * 18 17 15 44 44 H 1.08995 * 109.47668 * 59.99896 * 18 17 15 45 45 H 0.97005 * 120.00433 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4976 1.4451 -0.1468 5 7 4.4136 0.9442 0.7843 6 6 5.6231 1.1159 0.3309 7 6 5.5350 1.7401 -0.9356 8 6 6.6570 2.1186 -1.8025 9 8 6.4442 2.6529 -2.8739 10 8 7.9238 1.8736 -1.4111 11 6 8.9835 2.2754 -2.3188 12 6 10.3403 1.9184 -1.7086 13 6 4.1816 1.9276 -1.2030 14 7 3.6401 2.5063 -2.3387 15 6 2.6821 1.8606 -3.0327 16 8 2.3073 0.7648 -2.6732 17 6 2.0723 2.5030 -4.2519 18 6 1.0141 1.5704 -4.8445 19 6 0.4038 2.2131 -6.0633 20 1 0.7377 3.1890 -6.3836 21 6 -0.5800 1.5548 -6.7702 22 7 -0.9862 0.3662 -6.3806 23 14 -1.3359 2.3511 -8.2815 24 1 -0.5585 1.9643 -9.4861 25 1 -2.7409 1.8942 -8.4314 26 1 -1.3094 3.8280 -8.1284 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.7685 1.9239 0.9396 33 1 1.5902 1.9870 -0.8303 34 1 6.5350 0.8307 0.8345 35 1 8.8647 1.7549 -3.2692 36 1 8.9312 3.3514 -2.4849 37 1 10.3924 0.8423 -1.5429 38 1 11.1358 2.2196 -2.3902 39 1 10.4594 2.4386 -0.7582 40 1 3.9503 3.3764 -2.6347 41 1 1.6073 3.4479 -3.9706 42 1 2.8502 2.6874 -4.9930 43 1 1.4791 0.6255 -5.1258 44 1 0.2363 1.3860 -4.1035 45 1 -1.6786 -0.0968 -6.8777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813079299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:28 Heat of formation + Delta-G solvation = -65.189502 kcal Electronic energy + Delta-G solvation = -27705.658082 eV Core-core repulsion = 23724.603659 eV Total energy + Delta-G solvation = -3981.054423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.83493 -39.98893 -39.28038 -36.52080 -35.28958 -34.82381 -33.59602 -32.07708 -31.45412 -31.13441 -29.53499 -26.79311 -25.88284 -24.10498 -22.74576 -22.57625 -21.92659 -20.79405 -20.22500 -19.81331 -18.18963 -17.29213 -17.21571 -16.57181 -16.34824 -15.94286 -15.54027 -15.26158 -14.90009 -14.50757 -14.39872 -14.06471 -13.91449 -13.65627 -13.47486 -13.09179 -12.96490 -12.65905 -12.27183 -12.20263 -12.09991 -11.85318 -11.81378 -11.41054 -11.30731 -11.23853 -10.99047 -10.67510 -10.64773 -10.61988 -10.41099 -10.28377 -10.09236 -9.86732 -9.49502 -9.22603 -9.18887 -8.60424 -8.39705 -6.03896 -4.08597 1.18787 1.93809 2.02595 2.70108 2.79219 3.08970 3.25572 3.29440 3.36076 3.38307 4.30896 4.41594 4.74246 4.74975 4.84108 4.84859 4.92239 5.07627 5.12703 5.18475 5.20259 5.31741 5.32388 5.49342 5.53084 5.55803 5.61854 5.75110 5.76888 5.92202 6.01922 6.07186 6.09048 6.29920 6.35827 6.40031 6.43627 6.69026 6.87349 7.25367 7.52865 7.63834 7.71887 7.86337 7.95772 8.21510 8.36876 8.98600 9.55691 11.06866 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.003425 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.480606 B = 8174.252566 C =10254.796283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.135 3.865 4 N -0.345 5.345 5 N -0.287 5.287 6 C 0.111 3.889 7 C -0.309 4.309 8 C 0.549 3.451 9 O -0.520 6.520 10 O -0.356 6.356 11 C 0.064 3.936 12 C -0.152 4.152 13 C 0.405 3.595 14 N -0.662 5.662 15 C 0.512 3.488 16 O -0.505 6.505 17 C -0.126 4.126 18 C 0.039 3.961 19 C -0.529 4.529 20 H 0.057 0.943 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.198 0.802 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.427 0.573 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.787 4.688 14.888 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.014 3.986 4 N -0.126 5.126 5 N -0.107 5.107 6 C -0.077 4.077 7 C -0.325 4.325 8 C 0.395 3.605 9 O -0.410 6.410 10 O -0.273 6.273 11 C -0.010 4.010 12 C -0.209 4.209 13 C 0.176 3.824 14 N -0.317 5.317 15 C 0.302 3.698 16 O -0.376 6.376 17 C -0.166 4.166 18 C 0.002 3.998 19 C -0.567 4.567 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.215 0.785 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.267 0.733 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.417 3.464 15.703 21.597 hybrid contribution 0.310 1.153 -1.835 2.190 sum 14.727 4.617 13.867 20.748 Atomic orbital electron populations 1.21657 0.94275 1.02529 1.01960 1.21807 0.96727 0.94618 1.03900 1.22003 0.72632 1.00455 1.03469 1.48929 1.07614 1.44886 1.11183 1.77182 0.98337 1.21861 1.13293 1.23952 0.96365 0.94699 0.92698 1.18753 0.89378 1.22965 1.01377 1.19667 0.81861 0.75105 0.83881 1.90853 1.85507 1.41614 1.23018 1.86522 1.15249 1.76418 1.49117 1.22979 0.85022 1.00481 0.92478 1.21800 0.93997 1.03060 1.02026 1.17988 0.88764 0.92021 0.83605 1.43435 1.41359 1.23844 1.23069 1.22158 0.76849 0.85829 0.84977 1.90712 1.59398 1.19563 1.67958 1.21958 1.00982 1.01605 0.92073 1.18917 0.91772 0.93823 0.95319 1.21173 1.20685 1.03734 1.11135 0.92476 1.25006 0.96703 0.94873 0.97665 1.69984 1.29714 1.13227 1.39794 0.86581 0.78502 0.79576 0.83249 1.20608 1.21202 1.19835 0.93072 0.91676 0.92010 0.89326 0.91513 0.89378 0.88563 0.78519 0.91217 0.91287 0.91465 0.90340 0.91527 0.73265 0.89501 0.89199 0.95677 0.95724 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.13 -1.86 5.88 -26.73 -0.16 -2.02 16 3 C 0.13 1.81 5.43 -4.04 -0.02 1.79 16 4 N -0.34 -5.05 3.52 -59.94 -0.21 -5.26 16 5 N -0.29 -4.01 12.46 30.88 0.38 -3.62 16 6 C 0.11 1.37 11.86 -16.97 -0.20 1.16 16 7 C -0.31 -4.38 6.15 -104.86 -0.64 -5.03 16 8 C 0.55 7.80 7.94 34.17 0.27 8.07 16 9 O -0.52 -8.43 15.86 -19.34 -0.31 -8.74 16 10 O -0.36 -4.21 10.07 -40.84 -0.41 -4.62 16 11 C 0.06 0.60 6.20 37.16 0.23 0.83 16 12 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 13 C 0.40 6.14 6.81 -153.42 -1.05 5.10 16 14 N -0.66 -9.85 4.61 -11.08 -0.05 -9.90 16 15 C 0.51 9.18 6.59 -10.99 -0.07 9.10 16 16 O -0.50 -10.50 12.06 5.57 0.07 -10.43 16 17 C -0.13 -2.39 5.64 -27.88 -0.16 -2.55 16 18 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 19 C -0.53 -14.45 9.11 -34.44 -0.31 -14.76 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 23 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.55 6.46 -51.92 -0.34 1.22 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.38 6.12 -51.93 -0.32 1.06 16 34 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.43 5.38 8.51 -40.82 -0.35 5.04 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.02 0.67 8.10 -51.93 -0.42 0.24 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -33.52 383.35 -7.49 -41.01 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.88 Total: 3.35 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.58 Total: 2.06 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.86 Total: -44.61 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.65 Total: -23.79 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.52 -7.49 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813079299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.181 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds