Wall clock time and date at job start Tue Mar 31 2020 14:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.47100 * 2 1 4 4 N 1.28503 * 124.40599 * 269.96240 * 3 2 1 5 5 C 1.31075 * 109.12944 * 179.74571 * 4 3 2 6 6 C 1.50702 * 127.12638 * 180.28751 * 5 4 3 7 7 C 1.41173 * 105.75296 * 0.43190 * 5 4 3 8 8 C 1.47120 * 127.27765 * 179.83284 * 7 5 4 9 9 O 1.21255 * 119.99696 * 359.71554 * 8 7 5 10 10 C 1.50704 * 120.00064 * 179.70809 * 8 7 5 11 11 O 1.45196 * 109.47016 * 180.02562 * 10 8 7 12 12 C 1.34234 * 116.99938 * 179.97438 * 11 10 8 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47274 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46977 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.46630 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46793 * 120.00131 * 22 20 18 25 25 H 1.48492 * 109.47108 * 240.00016 * 22 20 18 26 26 N 1.28581 * 124.40753 * 89.99573 * 3 2 1 27 27 H 1.09006 * 109.47109 * 59.99964 * 1 2 3 28 28 H 1.09002 * 109.47259 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47224 * 300.00369 * 1 2 3 30 30 H 1.08997 * 109.46863 * 240.00518 * 2 1 3 31 31 H 1.08990 * 109.47058 * 119.99718 * 2 1 3 32 32 H 1.08999 * 109.47228 * 270.17352 * 6 5 4 33 33 H 1.09007 * 109.46878 * 30.16965 * 6 5 4 34 34 H 1.08995 * 109.47223 * 150.17022 * 6 5 4 35 35 H 1.08996 * 109.46943 * 60.00236 * 10 8 7 36 36 H 1.08999 * 109.47285 * 300.00376 * 10 8 7 37 37 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 38 38 H 1.08997 * 109.47392 * 59.99712 * 14 12 11 39 39 H 1.09004 * 109.47330 * 299.99977 * 15 14 12 40 40 H 1.09005 * 109.47124 * 59.99773 * 15 14 12 41 41 H 1.08999 * 109.46783 * 300.00124 * 16 15 14 42 42 H 1.09000 * 109.46608 * 60.00231 * 16 15 14 43 43 H 1.08988 * 109.47430 * 300.00270 * 17 16 15 44 44 H 1.08997 * 109.46441 * 60.00731 * 17 16 15 45 45 H 0.97000 * 119.99712 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2611 2.0656 -1.0602 5 6 2.6771 3.2597 -0.7149 6 6 3.0681 4.3879 -1.6343 7 6 2.6865 3.2688 0.6968 8 6 3.0795 4.3794 1.5781 9 8 3.4512 5.4300 1.1003 10 6 3.0200 4.2112 3.0745 11 8 3.4538 5.4388 3.7171 12 6 3.4589 5.4551 5.0594 13 8 3.1128 4.4759 5.6768 14 6 3.8975 6.6944 5.7962 15 6 3.8105 6.4490 7.3038 16 6 4.2563 7.7070 8.0519 17 6 4.1687 7.4617 9.5596 18 6 4.6085 8.7006 10.2964 19 1 4.9189 9.5755 9.7445 20 6 4.6144 8.7171 11.6751 21 7 4.2369 7.6516 12.3471 22 14 5.1588 10.2531 12.5884 23 1 5.5310 11.3055 11.6091 24 1 4.0459 10.7424 13.4412 25 1 6.3316 9.9324 13.4409 26 7 2.2605 2.0663 1.0608 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 4.1323 4.3204 -1.8602 33 1 2.4952 4.3180 -2.5591 34 1 2.8594 5.3412 -1.1488 35 1 3.6744 3.3928 3.3744 36 1 1.9964 3.9865 3.3745 37 1 4.9262 6.9329 5.5260 38 1 3.2484 7.5271 5.5252 39 1 2.7819 6.2103 7.5744 40 1 4.4599 5.6164 7.5745 41 1 5.2850 7.9452 7.7813 42 1 3.6072 8.5398 7.7813 43 1 3.1401 7.2237 9.8299 44 1 4.8177 6.6289 9.8304 45 1 4.2408 7.6634 13.3170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837728877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:11 Heat of formation + Delta-G solvation = -38.709151 kcal Electronic energy + Delta-G solvation = -25625.492841 eV Core-core repulsion = 21645.586693 eV Total energy + Delta-G solvation = -3979.906148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.18752 -40.67437 -39.42030 -36.60965 -35.67583 -34.96480 -33.65389 -32.67938 -32.03572 -30.37044 -29.46383 -28.27103 -26.05617 -25.24538 -23.26108 -22.64376 -21.60865 -20.60805 -20.45188 -20.00895 -18.03631 -17.60429 -17.25494 -16.86584 -16.77257 -16.18157 -16.13088 -15.32126 -15.17200 -14.70040 -14.47640 -14.39105 -14.35434 -13.86778 -13.33431 -13.17297 -13.07370 -12.88128 -12.79609 -12.61363 -12.23393 -12.12933 -12.04126 -11.73845 -11.64766 -11.49758 -11.00798 -10.94085 -10.81717 -10.60371 -10.58159 -10.47773 -10.45011 -10.24711 -9.75662 -9.63413 -9.27525 -8.99546 -8.30695 -5.95418 -3.97736 0.48815 1.34494 1.55364 2.24421 2.29853 2.34597 3.23983 3.34026 3.41322 3.45567 3.61726 4.12386 4.15540 4.22672 4.41649 4.49572 4.58678 4.75997 4.80729 4.87291 4.94326 4.95681 5.00662 5.20833 5.22927 5.29127 5.30159 5.34790 5.40318 5.46611 5.73515 5.74208 6.00411 6.07686 6.19371 6.30494 6.48629 6.78567 6.87585 6.96456 7.17983 7.62218 7.73796 7.75778 7.88536 8.05660 8.47617 9.10119 9.66123 11.15929 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029347 B = 0.001626 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.869268 B =17216.439561 C =18045.438467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.131 3.869 3 N -0.133 5.133 4 N -0.292 5.292 5 C 0.065 3.935 6 C -0.072 4.072 7 C -0.080 4.080 8 C 0.451 3.549 9 O -0.412 6.412 10 C 0.031 3.969 11 O -0.345 6.345 12 C 0.462 3.538 13 O -0.503 6.503 14 C -0.110 4.110 15 C -0.109 4.109 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.520 4.520 19 H 0.056 0.944 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.284 1.284 26 N -0.231 5.231 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 -15.628 -31.425 35.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 N -0.037 5.037 4 N -0.133 5.133 5 C -0.099 4.099 6 C -0.131 4.131 7 C -0.239 4.239 8 C 0.322 3.678 9 O -0.279 6.279 10 C -0.044 4.044 11 O -0.262 6.262 12 C 0.305 3.695 13 O -0.389 6.389 14 C -0.148 4.148 15 C -0.146 4.146 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.558 4.558 19 H 0.074 0.926 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 N -0.081 5.081 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.445 -16.703 -31.335 36.089 hybrid contribution 0.407 1.107 0.680 1.361 sum -6.039 -15.596 -30.655 34.920 Atomic orbital electron populations 1.22206 0.92562 1.04361 1.03937 1.22205 0.96476 0.73659 1.06455 1.48271 1.42777 1.13533 0.99088 1.73950 1.18880 1.05195 1.15229 1.23459 0.99975 0.93828 0.92626 1.20291 1.02376 0.93365 0.97073 1.23196 1.11625 0.94650 0.94475 1.20775 0.73918 0.84374 0.88723 1.90594 1.33113 1.26266 1.77962 1.23038 1.03555 0.87412 0.90356 1.86593 1.78826 1.38081 1.22697 1.24348 0.74270 0.91023 0.79874 1.90684 1.43889 1.36264 1.68075 1.21630 1.04168 0.92744 0.96218 1.21592 1.02913 1.00475 0.89636 1.21655 0.99758 0.94643 0.98736 1.19105 0.97319 0.96983 0.88381 1.21322 1.43867 0.99328 0.91312 0.92603 1.25045 0.95529 0.96146 0.97877 1.69984 1.48193 1.28342 1.06966 0.86546 0.78264 0.83417 0.79826 1.19739 1.21071 1.21066 1.74485 1.13647 1.04147 1.15795 0.91263 0.89125 0.91120 0.86826 0.86734 0.89697 0.90253 0.88709 0.87307 0.87332 0.87638 0.87639 0.91500 0.91501 0.93140 0.93148 0.96526 0.96528 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.50 10.24 37.16 0.38 -0.12 16 2 C 0.13 0.47 7.24 -4.04 -0.03 0.44 16 3 N -0.13 -1.07 3.94 -10.61 -0.04 -1.12 16 4 N -0.29 -2.69 12.00 33.97 0.41 -2.28 16 5 C 0.06 0.61 7.40 -81.80 -0.61 0.00 16 6 C -0.07 -0.50 9.99 36.01 0.36 -0.14 16 7 C -0.08 -0.81 7.13 -82.79 -0.59 -1.40 16 8 C 0.45 4.87 7.22 -30.70 -0.22 4.65 16 9 O -0.41 -5.17 15.36 -14.08 -0.22 -5.39 16 10 C 0.03 0.34 5.76 36.01 0.21 0.55 16 11 O -0.34 -4.55 9.76 -45.92 -0.45 -5.00 16 12 C 0.46 6.65 7.96 36.01 0.29 6.94 16 13 O -0.50 -8.53 15.73 -18.75 -0.29 -8.82 16 14 C -0.11 -1.49 5.81 -27.89 -0.16 -1.65 16 15 C -0.11 -1.88 4.50 -26.73 -0.12 -2.00 16 16 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 17 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 18 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 22 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 N -0.23 -2.22 11.98 33.35 0.40 -1.82 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.71 6.78 -51.93 -0.35 0.35 16 35 H 0.11 1.10 8.13 -51.93 -0.42 0.67 16 36 H 0.11 1.09 8.13 -51.93 -0.42 0.67 16 37 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.46 8.14 -51.94 -0.42 0.04 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -35.69 392.01 -6.83 -42.51 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -7.08 Total: -5.72 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.18 Total: -8.48 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 1.50 Total: -31.88 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.96 Total: -19.21 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.69 -6.83 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837728877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.805 kcal (2) G-P(sol) polarization free energy of solvation -35.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds