Wall clock time and date at job start Tue Mar 31 2020 14:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.47100 * 2 1 4 4 N 1.28503 * 124.40599 * 269.96240 * 3 2 1 5 5 C 1.31075 * 109.12944 * 179.74571 * 4 3 2 6 6 C 1.50702 * 127.12638 * 180.28751 * 5 4 3 7 7 C 1.41173 * 105.75296 * 0.43190 * 5 4 3 8 8 C 1.47120 * 127.27765 * 179.83284 * 7 5 4 9 9 O 1.21255 * 119.99696 * 359.71554 * 8 7 5 10 10 C 1.50704 * 120.00064 * 179.70809 * 8 7 5 11 11 O 1.45196 * 109.47016 * 180.02562 * 10 8 7 12 12 C 1.34234 * 116.99938 * 179.97438 * 11 10 8 13 13 O 1.20822 * 119.99973 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.52992 * 109.47257 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47274 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46977 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.46630 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46793 * 120.00131 * 22 20 18 25 25 H 1.48492 * 109.47108 * 240.00016 * 22 20 18 26 26 N 1.28581 * 124.40753 * 89.99573 * 3 2 1 27 27 H 1.09006 * 109.47109 * 59.99964 * 1 2 3 28 28 H 1.09002 * 109.47259 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47224 * 300.00369 * 1 2 3 30 30 H 1.08997 * 109.46863 * 240.00518 * 2 1 3 31 31 H 1.08990 * 109.47058 * 119.99718 * 2 1 3 32 32 H 1.08999 * 109.47228 * 270.17352 * 6 5 4 33 33 H 1.09007 * 109.46878 * 30.16965 * 6 5 4 34 34 H 1.08995 * 109.47223 * 150.17022 * 6 5 4 35 35 H 1.08996 * 109.46943 * 60.00236 * 10 8 7 36 36 H 1.08999 * 109.47285 * 300.00376 * 10 8 7 37 37 H 1.09004 * 109.46932 * 300.00373 * 14 12 11 38 38 H 1.08997 * 109.47392 * 59.99712 * 14 12 11 39 39 H 1.09004 * 109.47330 * 299.99977 * 15 14 12 40 40 H 1.09005 * 109.47124 * 59.99773 * 15 14 12 41 41 H 1.08999 * 109.46783 * 300.00124 * 16 15 14 42 42 H 1.09000 * 109.46608 * 60.00231 * 16 15 14 43 43 H 1.08988 * 109.47430 * 300.00270 * 17 16 15 44 44 H 1.08997 * 109.46441 * 60.00731 * 17 16 15 45 45 H 0.97000 * 119.99712 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2611 2.0656 -1.0602 5 6 2.6771 3.2597 -0.7149 6 6 3.0681 4.3879 -1.6343 7 6 2.6865 3.2688 0.6968 8 6 3.0795 4.3794 1.5781 9 8 3.4512 5.4300 1.1003 10 6 3.0200 4.2112 3.0745 11 8 3.4538 5.4388 3.7171 12 6 3.4589 5.4551 5.0594 13 8 3.1128 4.4759 5.6768 14 6 3.8975 6.6944 5.7962 15 6 3.8105 6.4490 7.3038 16 6 4.2563 7.7070 8.0519 17 6 4.1687 7.4617 9.5596 18 6 4.6085 8.7006 10.2964 19 1 4.9189 9.5755 9.7445 20 6 4.6144 8.7171 11.6751 21 7 4.2369 7.6516 12.3471 22 14 5.1588 10.2531 12.5884 23 1 5.5310 11.3055 11.6091 24 1 4.0459 10.7424 13.4412 25 1 6.3316 9.9324 13.4409 26 7 2.2605 2.0663 1.0608 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 4.1323 4.3204 -1.8602 33 1 2.4952 4.3180 -2.5591 34 1 2.8594 5.3412 -1.1488 35 1 3.6744 3.3928 3.3744 36 1 1.9964 3.9865 3.3745 37 1 4.9262 6.9329 5.5260 38 1 3.2484 7.5271 5.5252 39 1 2.7819 6.2103 7.5744 40 1 4.4599 5.6164 7.5745 41 1 5.2850 7.9452 7.7813 42 1 3.6072 8.5398 7.7813 43 1 3.1401 7.2237 9.8299 44 1 4.8177 6.6289 9.8304 45 1 4.2408 7.6634 13.3170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837728877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:11 Heat of formation + Delta-G solvation = -59.885545 kcal Electronic energy + Delta-G solvation = -25626.411118 eV Core-core repulsion = 21645.586693 eV Total energy + Delta-G solvation = -3980.824426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.84941 -41.75807 -40.35114 -37.74899 -36.61192 -36.15755 -34.65552 -34.32789 -32.55374 -31.83567 -30.57347 -28.90233 -27.63803 -26.11242 -24.48256 -23.61555 -22.25530 -22.05207 -21.46517 -21.26234 -18.89813 -18.45948 -18.35617 -18.07324 -17.79245 -17.67653 -17.02663 -16.48467 -16.44905 -15.75970 -15.65368 -15.40699 -14.93749 -14.56417 -14.46671 -14.24168 -14.00845 -13.86077 -13.64715 -13.53162 -13.48157 -13.30742 -13.07941 -12.84970 -12.72115 -12.40301 -12.32435 -12.18348 -12.17542 -12.15028 -11.96218 -11.72563 -11.51170 -11.36555 -11.31342 -11.18297 -11.00019 -10.53699 -10.38679 -8.17560 -6.28909 -0.28472 0.66899 1.02749 1.12083 1.36183 1.42157 1.42400 1.55974 1.56093 2.43057 2.49685 2.87055 3.15590 3.56996 3.66184 3.82616 3.86497 3.92842 3.95340 4.00917 4.07070 4.11589 4.19611 4.35521 4.51016 4.55535 4.65757 4.66598 4.70214 4.74964 4.80809 4.88162 4.92035 5.12263 5.16703 5.16880 5.18910 5.34148 5.39145 5.45825 5.58749 5.80267 5.90327 6.04479 6.27520 6.64577 6.89808 6.94349 7.40597 8.94694 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029347 B = 0.001626 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.869268 B =17216.439561 C =18045.438467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.125 5.125 4 N -0.300 5.300 5 C 0.056 3.944 6 C -0.071 4.071 7 C -0.100 4.100 8 C 0.461 3.539 9 O -0.434 6.434 10 C 0.028 3.972 11 O -0.346 6.346 12 C 0.468 3.532 13 O -0.534 6.534 14 C -0.102 4.102 15 C -0.100 4.100 16 C -0.097 4.097 17 C 0.018 3.982 18 C -0.541 4.541 19 H 0.065 0.935 20 C -0.006 4.006 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.258 1.258 24 H -0.280 1.280 25 H -0.279 1.279 26 N -0.239 5.239 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.055 0.945 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.063 0.937 43 H -0.012 1.012 44 H -0.012 1.012 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 -15.115 -32.949 36.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.000 4.000 3 N -0.030 5.030 4 N -0.142 5.142 5 C -0.107 4.107 6 C -0.129 4.129 7 C -0.257 4.257 8 C 0.333 3.667 9 O -0.303 6.303 10 C -0.046 4.046 11 O -0.262 6.262 12 C 0.313 3.687 13 O -0.423 6.423 14 C -0.139 4.139 15 C -0.138 4.138 16 C -0.135 4.135 17 C -0.019 4.019 18 C -0.579 4.579 19 H 0.084 0.916 20 C -0.203 4.203 21 N -0.577 5.577 22 Si 0.792 3.208 23 H -0.182 1.182 24 H -0.205 1.205 25 H -0.205 1.205 26 N -0.090 5.090 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.074 0.926 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.006 0.994 44 H 0.006 0.994 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.127 -16.184 -32.892 37.167 hybrid contribution 0.250 0.798 1.112 1.391 sum -5.877 -15.386 -31.780 35.795 Atomic orbital electron populations 1.22184 0.91931 1.05705 1.02638 1.22715 0.96978 0.71906 1.08374 1.48820 1.41340 1.14397 0.98462 1.73950 1.19238 1.05297 1.15670 1.23842 0.99694 0.94449 0.92689 1.20355 1.03174 0.92228 0.97167 1.23094 1.13019 0.94817 0.94802 1.20720 0.73143 0.84250 0.88541 1.90583 1.34409 1.27065 1.78197 1.23223 1.04224 0.86780 0.90408 1.86564 1.78591 1.39126 1.21954 1.24395 0.73431 0.90701 0.80157 1.90681 1.45474 1.37446 1.68725 1.21522 1.06294 0.93049 0.93080 1.21365 1.01566 0.98483 0.92354 1.21449 1.00999 0.96385 0.94640 1.19065 0.94713 0.95423 0.92749 1.21800 1.43767 1.00264 0.92083 0.91637 1.26058 0.95473 0.99710 0.99071 1.70129 1.49350 1.30824 1.07416 0.85355 0.77827 0.79171 0.78416 1.18223 1.20535 1.20523 1.74452 1.13821 1.04187 1.16515 0.92261 0.86455 0.92604 0.84709 0.85087 0.88765 0.88769 0.89362 0.86455 0.86526 0.85205 0.85207 0.92872 0.92871 0.91866 0.91876 0.99373 0.99379 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.24 71.98 0.74 0.01 16 2 C 0.12 0.64 7.24 86.38 0.63 1.27 16 3 N -0.12 -1.88 3.94 -187.49 -0.74 -2.62 16 4 N -0.30 -5.24 12.00 -46.45 -0.56 -5.80 16 5 C 0.06 1.02 7.40 43.39 0.32 1.34 16 6 C -0.07 -0.93 9.99 71.24 0.71 -0.22 16 7 C -0.10 -1.99 7.13 42.07 0.30 -1.69 16 8 C 0.46 9.79 7.22 28.02 0.20 9.99 16 9 O -0.43 -10.74 15.36 15.85 0.24 -10.49 16 10 C 0.03 0.60 5.76 71.24 0.41 1.01 16 11 O -0.35 -8.73 9.76 -45.10 -0.44 -9.17 16 12 C 0.47 12.99 7.96 71.24 0.57 13.56 16 13 O -0.53 -18.03 15.73 21.98 0.35 -17.68 16 14 C -0.10 -2.57 5.81 29.85 0.17 -2.39 16 15 C -0.10 -3.42 4.50 30.59 0.14 -3.28 16 16 C -0.10 -3.87 5.15 30.60 0.16 -3.71 16 17 C 0.02 0.95 4.97 29.85 0.15 1.10 16 18 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 19 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 20 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 21 N -0.94 -58.44 13.29 21.45 0.28 -58.16 16 22 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 26 N -0.24 -4.42 11.98 -48.39 -0.58 -5.00 16 27 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 28 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.09 1.29 6.78 -2.39 -0.02 1.27 16 35 H 0.12 2.30 8.13 -2.39 -0.02 2.28 16 36 H 0.12 2.30 8.13 -2.39 -0.02 2.28 16 37 H 0.13 2.69 8.14 -2.38 -0.02 2.67 16 38 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.05 1.94 8.10 -2.38 -0.02 1.92 16 40 H 0.05 1.94 8.10 -2.38 -0.02 1.92 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 44 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 45 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -77.78 392.01 6.75 -71.03 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 0.98 Total: 4.92 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 5.19 Total: -13.83 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -1.59 Total: -71.58 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: 0.15 Total: -37.34 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -77.78 6.75 -71.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837728877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.146 kcal (2) G-P(sol) polarization free energy of solvation -77.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds