Wall clock time and date at job start Tue Mar 31 2020 14:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46491 * 109.47289 * 2 1 4 4 C 1.46500 * 119.99801 * 269.99810 * 3 2 1 5 5 C 1.50703 * 109.47362 * 270.00009 * 4 3 2 6 6 H 1.08008 * 119.99752 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00291 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00007 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00048 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47079 * 89.99533 * 9 7 5 11 11 H 1.48497 * 109.46924 * 209.99386 * 9 7 5 12 12 H 1.48496 * 109.47007 * 329.99592 * 9 7 5 13 13 C 1.34776 * 120.00452 * 90.00236 * 3 2 1 14 14 O 1.21274 * 120.00467 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99643 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47016 * 180.02562 * 15 13 3 17 17 C 1.34234 * 116.99938 * 179.97438 * 16 15 13 18 18 O 1.20822 * 119.99973 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00068 * 179.97438 * 17 16 15 20 20 C 1.52992 * 109.47257 * 180.02562 * 19 17 16 21 21 H 1.08999 * 109.47251 * 305.00182 * 20 19 17 22 22 C 1.53003 * 109.47222 * 65.00044 * 20 19 17 23 23 N 1.46498 * 109.47177 * 184.99819 * 20 19 17 24 24 C 1.36888 * 126.39597 * 119.71391 * 23 20 19 25 25 C 1.34669 * 106.81557 * 179.84461 * 24 23 20 26 26 N 1.34126 * 108.02007 * 0.41731 * 25 24 23 27 27 C 1.30497 * 109.25775 * 359.73659 * 26 25 24 28 28 H 1.09002 * 109.47127 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47522 * 300.00160 * 1 2 3 30 30 H 1.09002 * 109.47121 * 60.00199 * 1 2 3 31 31 H 1.09005 * 109.47240 * 239.99518 * 2 1 3 32 32 H 1.09003 * 109.46951 * 120.00329 * 2 1 3 33 33 H 1.08996 * 109.47402 * 29.99639 * 4 3 2 34 34 H 1.08999 * 109.47280 * 150.00267 * 4 3 2 35 35 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.46943 * 60.00331 * 15 13 3 37 37 H 1.08999 * 109.47285 * 300.00471 * 15 13 3 38 38 H 1.09004 * 109.46932 * 300.00373 * 19 17 16 39 39 H 1.08997 * 109.47392 * 59.99712 * 19 17 16 40 40 H 1.08993 * 109.47263 * 59.99694 * 22 20 19 41 41 H 1.08998 * 109.47147 * 180.02562 * 22 20 19 42 42 H 1.09005 * 109.46613 * 300.00052 * 22 20 19 43 43 H 1.07996 * 126.59190 * 359.97438 * 24 23 20 44 44 H 1.08001 * 125.98900 * 180.11831 * 25 24 23 45 45 H 1.08004 * 125.64754 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3902 -2.8775 8 7 3.3495 3.1263 -3.6176 9 14 5.9136 2.0960 -3.4170 10 1 5.9762 0.8754 -4.2606 11 1 6.3931 3.2635 -4.1995 12 1 6.7736 1.9152 -2.2201 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1600 1.1671 15 6 1.9913 1.3063 2.4723 16 8 2.3055 2.1960 3.5759 17 6 2.1335 1.7127 4.8163 18 8 1.7341 0.5834 4.9746 19 6 2.4396 2.5782 6.0114 20 6 2.1612 1.7929 7.2945 21 1 1.1366 1.4212 7.2780 22 6 3.1302 0.6127 7.3906 23 7 2.3438 2.6702 8.4534 24 6 1.3936 2.9959 9.3834 25 6 1.9834 3.8189 10.2713 26 7 3.2564 3.9983 9.8887 27 6 3.4794 3.3134 8.8005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6875 -2.0284 34 1 2.0956 3.1409 -1.1385 35 1 3.6756 3.5167 -4.4435 36 1 2.6212 0.4186 2.5302 37 1 0.9433 1.0125 2.5299 38 1 3.4885 2.8736 5.9869 39 1 1.8109 3.4682 5.9861 40 1 4.1547 0.9843 7.4071 41 1 2.9316 0.0530 8.3046 42 1 2.9943 -0.0401 6.5283 43 1 0.3686 2.6563 9.4026 44 1 1.5125 4.2611 11.1368 45 1 4.4168 3.2686 8.2659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845279160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:20 Heat of formation + Delta-G solvation = -54.957196 kcal Electronic energy + Delta-G solvation = -26913.660798 eV Core-core repulsion = 22933.050081 eV Total energy + Delta-G solvation = -3980.610716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.42622 -40.87214 -39.12768 -37.09550 -35.85606 -35.39526 -32.90554 -31.52211 -30.27254 -29.81677 -29.40508 -28.40050 -26.53259 -24.02717 -23.15934 -22.72083 -21.72785 -21.41525 -20.31584 -18.77865 -18.37424 -17.22131 -17.08961 -16.76439 -16.48379 -15.95201 -15.58844 -15.56015 -14.98516 -14.73064 -14.33257 -14.17518 -14.09419 -13.69657 -13.57313 -13.51252 -13.34082 -13.01219 -12.63915 -12.46805 -12.15192 -12.12440 -12.03682 -11.79847 -11.71032 -11.30326 -11.02336 -10.97397 -10.80367 -10.71658 -10.59664 -10.23707 -10.20410 -9.98821 -9.72540 -9.10299 -8.80847 -8.50186 -7.83915 -6.11203 -4.16410 1.71252 1.84546 2.01742 2.62590 2.92333 3.14668 3.25960 3.33231 3.37410 3.74660 3.86280 4.15805 4.37518 4.42430 4.44430 4.54472 4.66185 4.74754 4.87257 4.98827 5.01966 5.08288 5.13606 5.23430 5.24527 5.26478 5.31893 5.42552 5.49927 5.64281 5.68071 5.90482 5.96824 6.11283 6.17200 6.36583 6.44571 6.85690 6.91473 7.32274 7.36928 7.44357 7.80179 7.84360 8.13928 8.20801 8.76328 8.91594 9.48864 10.96969 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.002324 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.557269 B =12047.318833 C =12801.224599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.518 6.518 15 C 0.050 3.950 16 O -0.325 6.325 17 C 0.470 3.530 18 O -0.509 6.509 19 C -0.128 4.128 20 C 0.147 3.853 21 H 0.112 0.888 22 C -0.171 4.171 23 N -0.455 5.455 24 C -0.055 4.055 25 C -0.031 4.031 26 N -0.495 5.495 27 C 0.184 3.816 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.174 0.826 44 H 0.169 0.831 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 -6.794 21.195 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.290 3.710 14 O -0.394 6.394 15 C -0.027 4.027 16 O -0.239 6.239 17 C 0.312 3.688 18 O -0.398 6.398 19 C -0.166 4.166 20 C 0.043 3.957 21 H 0.130 0.870 22 C -0.228 4.228 23 N -0.139 5.139 24 C -0.187 4.187 25 C -0.179 4.179 26 N -0.213 5.213 27 C -0.099 4.099 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.191 0.809 44 H 0.186 0.814 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.564 -6.000 21.295 22.813 hybrid contribution 0.231 -0.860 -0.927 1.286 sum -5.332 -6.861 20.368 22.144 Atomic orbital electron populations 1.22234 0.96497 1.01728 1.02423 1.21514 0.93769 0.83926 1.03057 1.48219 1.63706 1.13411 1.07139 1.19344 0.96539 0.93708 0.77495 1.21407 0.96802 1.32184 1.06417 0.92407 1.24936 0.97964 0.94811 0.96360 1.69924 1.35758 1.33230 1.14312 0.86479 0.84504 0.77725 0.78615 1.20605 1.21025 1.19875 1.19688 0.79851 0.87179 0.84284 1.90726 1.44495 1.17472 1.86699 1.23030 1.02823 0.92581 0.84302 1.86563 1.78109 1.45001 1.14217 1.23190 0.74277 0.86540 0.84748 1.90656 1.42664 1.19853 1.86659 1.21684 1.06753 0.99269 0.88888 1.21171 1.03449 0.89216 0.81826 0.86983 1.22338 0.98468 0.97261 1.04738 1.45709 1.10806 1.36326 1.21020 1.22785 0.96306 1.05726 0.93908 1.22324 0.91364 1.02440 1.01778 1.70323 1.17058 1.22333 1.11596 1.24967 0.92395 0.96137 0.96357 0.91857 0.93181 0.91739 0.89348 0.91781 0.94589 0.93692 0.92616 0.88475 0.88587 0.86380 0.86480 0.91658 0.91396 0.88520 0.80906 0.81386 0.78048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.10 1.50 5.93 -4.05 -0.02 1.48 16 3 N -0.59 -11.85 2.46 -175.07 -0.43 -12.28 16 4 C 0.25 6.22 5.16 -5.19 -0.03 6.20 16 5 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 9 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 13 C 0.51 10.15 7.75 -10.98 -0.09 10.07 16 14 O -0.52 -12.88 16.08 -14.10 -0.23 -13.11 16 15 C 0.05 0.73 4.50 36.01 0.16 0.89 16 16 O -0.32 -4.74 9.75 -45.92 -0.45 -5.18 16 17 C 0.47 5.21 7.68 36.01 0.28 5.48 16 18 O -0.51 -6.08 13.72 -18.75 -0.26 -6.34 16 19 C -0.13 -0.98 5.28 -27.89 -0.15 -1.13 16 20 C 0.15 1.02 2.70 -67.93 -0.18 0.83 16 21 H 0.11 0.75 7.90 -51.93 -0.41 0.34 16 22 C -0.17 -1.16 8.99 37.16 0.33 -0.83 16 23 N -0.46 -3.58 2.62 -111.46 -0.29 -3.88 16 24 C -0.05 -0.43 11.54 -16.56 -0.19 -0.62 16 25 C -0.03 -0.29 11.87 -17.81 -0.21 -0.51 16 26 N -0.50 -5.63 11.25 -14.67 -0.16 -5.80 16 27 C 0.18 1.65 11.65 -90.38 -1.05 0.60 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.10 1.26 7.39 -51.93 -0.38 0.87 16 37 H 0.10 1.20 7.18 -51.93 -0.37 0.83 16 38 H 0.12 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.39 7.95 -51.93 -0.41 -0.02 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.79 5.96 -51.93 -0.31 0.48 16 43 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 45 H 0.20 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -35.36 382.69 -8.27 -43.63 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.75 Total: -1.44 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -1.19 Total: 7.48 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.15 Total: -47.21 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.93 Total: -24.63 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.36 -8.27 -43.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845279160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.329 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds