Wall clock time and date at job start Tue Mar 31 2020 14:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47333 * 2 1 4 4 C 1.46493 * 119.99932 * 269.99839 * 3 2 1 5 5 C 1.50700 * 109.47432 * 270.00235 * 4 3 2 6 6 H 1.08004 * 119.99532 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00086 * 180.02562 * 5 4 3 8 8 N 1.31504 * 120.00252 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99689 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47219 * 359.97438 * 9 7 5 11 11 H 1.48510 * 109.46955 * 119.99848 * 9 7 5 12 12 H 1.48495 * 109.47236 * 239.99576 * 9 7 5 13 13 C 1.34776 * 119.99861 * 90.00148 * 3 2 1 14 14 O 1.21289 * 119.99627 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00055 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.47296 * 180.02562 * 15 13 3 17 17 C 1.34227 * 117.00465 * 179.97438 * 16 15 13 18 18 O 1.20827 * 119.99570 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99913 * 179.97438 * 17 16 15 20 20 C 1.53008 * 109.46781 * 180.02562 * 19 17 16 21 21 H 1.08996 * 109.47216 * 55.00115 * 20 19 17 22 22 C 1.53005 * 109.46912 * 295.00279 * 20 19 17 23 23 N 1.46500 * 109.46921 * 175.00576 * 20 19 17 24 24 C 1.36885 * 126.39286 * 239.99693 * 23 20 19 25 25 C 1.34665 * 106.81493 * 179.97438 * 24 23 20 26 26 N 1.34129 * 108.02445 * 0.02562 * 25 24 23 27 27 C 1.30498 * 109.25189 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47161 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47001 * 300.00167 * 1 2 3 30 30 H 1.08999 * 109.46807 * 59.99859 * 1 2 3 31 31 H 1.08997 * 109.47422 * 239.99523 * 2 1 3 32 32 H 1.09008 * 109.47018 * 120.00066 * 2 1 3 33 33 H 1.09003 * 109.47425 * 30.00231 * 4 3 2 34 34 H 1.09001 * 109.47233 * 149.99667 * 4 3 2 35 35 H 0.97005 * 120.00002 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47734 * 60.00530 * 15 13 3 37 37 H 1.08998 * 109.47620 * 300.00005 * 15 13 3 38 38 H 1.08997 * 109.47037 * 60.00908 * 19 17 16 39 39 H 1.08993 * 109.47581 * 300.00176 * 19 17 16 40 40 H 1.09000 * 109.46506 * 180.02562 * 22 20 19 41 41 H 1.08996 * 109.47046 * 299.99941 * 22 20 19 42 42 H 1.08991 * 109.47042 * 60.00040 * 22 20 19 43 43 H 1.07999 * 126.59054 * 359.73997 * 24 23 20 44 44 H 1.08008 * 125.98738 * 179.97438 * 25 24 23 45 45 H 1.08006 * 125.64605 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3903 -2.8774 8 7 3.3496 3.1264 -3.6175 9 14 5.9139 2.0972 -3.4163 10 1 6.6015 1.2420 -2.4158 11 1 5.9218 1.4186 -4.7373 12 1 6.6212 3.3985 -3.5241 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1602 1.1672 15 6 1.9914 1.3063 2.4723 16 8 2.3055 2.1960 3.5759 17 6 2.1334 1.7127 4.8163 18 8 1.7341 0.5834 4.9746 19 6 2.4395 2.5783 6.0114 20 6 2.1611 1.7928 7.2946 21 1 2.7236 0.8594 7.2786 22 6 0.6653 1.4853 7.3899 23 7 2.5705 2.5899 8.4536 24 6 3.5096 2.2429 9.3871 25 6 3.5730 3.2566 10.2714 26 7 2.6962 4.1967 9.8886 27 6 2.0923 3.8042 8.8004 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.6757 3.5169 -4.4435 36 1 2.6212 0.4186 2.5303 37 1 0.9433 1.0126 2.5299 38 1 1.8107 3.4682 5.9861 39 1 3.4884 2.8737 5.9870 40 1 0.4669 0.9261 8.3043 41 1 0.1028 2.4187 7.4060 42 1 0.3607 0.8923 6.5276 43 1 4.0858 1.3298 9.4120 44 1 4.2165 3.3039 11.1375 45 1 1.3348 4.3585 8.2660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845279161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:23 Heat of formation + Delta-G solvation = -55.020730 kcal Electronic energy + Delta-G solvation = -26911.432741 eV Core-core repulsion = 22930.819269 eV Total energy + Delta-G solvation = -3980.613471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.42606 -40.87205 -39.12636 -37.09583 -35.85632 -35.39352 -32.90784 -31.52290 -30.27387 -29.81722 -29.40629 -28.40468 -26.53443 -24.03007 -23.16060 -22.72144 -21.72843 -21.41406 -20.31704 -18.78118 -18.37400 -17.23947 -17.00174 -16.85499 -16.48332 -15.95016 -15.62441 -15.40727 -15.18000 -14.63990 -14.27150 -14.25283 -14.01734 -13.74711 -13.63717 -13.53952 -13.25006 -13.01251 -12.67190 -12.45318 -12.16766 -12.13600 -12.02327 -11.81098 -11.70921 -11.30557 -11.03124 -10.94507 -10.82233 -10.70213 -10.61515 -10.23851 -10.20697 -9.98756 -9.70868 -9.10409 -8.80768 -8.50652 -7.83875 -6.11532 -4.16613 1.71362 1.84695 2.01483 2.62629 2.92358 3.14526 3.25510 3.33663 3.37292 3.74685 3.85978 4.15814 4.37450 4.42325 4.43873 4.54568 4.66033 4.74709 4.86822 4.98656 5.01691 5.08241 5.13769 5.23218 5.24100 5.26547 5.31186 5.42694 5.49846 5.64240 5.66752 5.90553 5.96791 6.11284 6.17088 6.36562 6.44674 6.85709 6.91342 7.32168 7.36942 7.44376 7.80075 7.84247 8.13806 8.20695 8.76290 8.91660 9.48752 10.96678 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.002337 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.978230 B =11978.998545 C =12870.253318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.506 3.494 14 O -0.518 6.518 15 C 0.050 3.950 16 O -0.325 6.325 17 C 0.470 3.530 18 O -0.509 6.509 19 C -0.127 4.127 20 C 0.146 3.854 21 H 0.112 0.888 22 C -0.170 4.170 23 N -0.455 5.455 24 C -0.054 4.054 25 C -0.031 4.031 26 N -0.495 5.495 27 C 0.183 3.817 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.174 0.826 44 H 0.169 0.831 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.659 -7.013 21.216 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.290 3.710 14 O -0.394 6.394 15 C -0.027 4.027 16 O -0.239 6.239 17 C 0.312 3.688 18 O -0.398 6.398 19 C -0.166 4.166 20 C 0.043 3.957 21 H 0.130 0.870 22 C -0.228 4.228 23 N -0.139 5.139 24 C -0.187 4.187 25 C -0.179 4.179 26 N -0.213 5.213 27 C -0.099 4.099 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.191 0.809 44 H 0.186 0.814 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.746 -5.963 21.316 22.868 hybrid contribution 1.106 -1.155 -0.928 1.849 sum -4.640 -7.119 20.388 22.088 Atomic orbital electron populations 1.22232 0.96481 1.01728 1.02428 1.21518 0.93778 0.83923 1.03058 1.48220 1.63697 1.13410 1.07136 1.19349 0.96552 0.93713 0.77503 1.21445 0.96801 1.32119 1.06388 0.92364 1.24935 0.97958 0.94828 0.96356 1.69933 1.35654 1.33298 1.14332 0.86430 0.84477 0.78113 0.78320 1.19804 1.20914 1.20811 1.19691 0.79852 0.87181 0.84286 1.90730 1.44503 1.17470 1.86708 1.23029 1.02826 0.92578 0.84295 1.86561 1.78122 1.44991 1.14217 1.23190 0.74219 0.86599 0.84748 1.90658 1.42619 1.19899 1.86663 1.21682 1.06672 0.99344 0.88879 1.21176 0.98699 0.93982 0.81835 0.86962 1.22335 0.92456 1.03250 1.04724 1.45703 1.30635 1.16630 1.20893 1.22789 0.98783 1.03274 0.93826 1.22324 1.02001 0.91740 1.01842 1.70324 1.10059 1.29333 1.11591 1.24956 1.02631 0.85977 0.96339 0.91858 0.93176 0.91730 0.89351 0.91788 0.94575 0.93686 0.92670 0.88508 0.88549 0.86413 0.86445 0.91400 0.91694 0.88536 0.80894 0.81379 0.78066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.10 1.50 5.93 -4.04 -0.02 1.47 16 3 N -0.59 -11.84 2.46 -175.06 -0.43 -12.27 16 4 C 0.25 6.22 5.16 -5.20 -0.03 6.19 16 5 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.51 10.15 7.75 -10.99 -0.09 10.06 16 14 O -0.52 -12.88 16.08 -14.11 -0.23 -13.10 16 15 C 0.05 0.73 4.50 36.00 0.16 0.89 16 16 O -0.32 -4.73 9.75 -45.90 -0.45 -5.18 16 17 C 0.47 5.21 7.67 36.01 0.28 5.48 16 18 O -0.51 -6.08 13.72 -18.75 -0.26 -6.34 16 19 C -0.13 -0.98 5.29 -27.88 -0.15 -1.13 16 20 C 0.15 1.01 2.70 -67.92 -0.18 0.83 16 21 H 0.11 0.76 7.90 -51.93 -0.41 0.35 16 22 C -0.17 -1.12 8.99 37.16 0.33 -0.79 16 23 N -0.46 -3.59 2.62 -111.45 -0.29 -3.88 16 24 C -0.05 -0.43 11.54 -16.56 -0.19 -0.62 16 25 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 26 N -0.50 -5.62 11.25 -14.66 -0.16 -5.78 16 27 C 0.18 1.63 11.65 -90.38 -1.05 0.58 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.58 7.22 -51.93 -0.37 0.21 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.06 0.78 6.44 -51.92 -0.33 0.44 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.10 1.27 7.39 -51.93 -0.38 0.88 16 37 H 0.10 1.19 7.18 -51.93 -0.37 0.82 16 38 H 0.12 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.37 7.95 -51.93 -0.41 -0.04 16 42 H 0.10 0.76 5.96 -51.93 -0.31 0.45 16 43 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 45 H 0.20 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -35.41 382.69 -8.27 -43.68 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.75 Total: -1.56 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -1.19 Total: 7.48 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.15 Total: -47.20 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.93 Total: -24.62 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.41 -8.27 -43.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845279161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.340 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds