Wall clock time and date at job start Tue Mar 31 2020 14:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.47517 * 2 1 4 4 C 1.53001 * 109.47189 * 240.00313 * 2 1 3 5 5 C 1.50698 * 109.47505 * 64.99751 * 4 2 1 6 6 O 1.20823 * 119.99584 * 0.02562 * 5 4 2 7 7 O 1.34225 * 120.00276 * 180.02562 * 5 4 2 8 8 C 1.45200 * 117.00048 * 180.02562 * 7 5 4 9 9 H 1.08993 * 109.47475 * 329.99839 * 8 7 5 10 10 C 1.53006 * 109.47003 * 89.99778 * 8 7 5 11 11 C 1.50698 * 109.46811 * 209.99590 * 8 7 5 12 12 O 1.21274 * 120.00414 * 354.99767 * 11 8 7 13 13 N 1.34776 * 119.99626 * 174.99815 * 11 8 7 14 14 C 1.46503 * 120.00522 * 0.02562 * 13 11 8 15 15 C 1.46508 * 120.00166 * 179.97438 * 13 11 8 16 16 C 1.50701 * 109.46623 * 89.99969 * 15 13 11 17 17 H 1.08000 * 120.00374 * 0.02562 * 16 15 13 18 18 C 1.37874 * 119.99772 * 180.02562 * 16 15 13 19 19 N 1.31518 * 120.00305 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00042 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47328 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47445 * 120.00365 * 20 18 16 23 23 H 1.48506 * 109.47224 * 239.99775 * 20 18 16 24 24 N 1.46499 * 109.47238 * 120.00054 * 2 1 3 25 25 C 1.36888 * 126.39639 * 239.71359 * 24 2 1 26 26 C 1.34675 * 106.81261 * 179.84275 * 25 24 2 27 27 N 1.34126 * 108.02282 * 0.41876 * 26 25 24 28 28 C 1.30505 * 109.25529 * 359.73873 * 27 26 25 29 29 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47360 * 300.00121 * 1 2 3 31 31 H 1.09007 * 109.47484 * 60.00116 * 1 2 3 32 32 H 1.09003 * 109.47041 * 304.99524 * 4 2 1 33 33 H 1.09003 * 109.47102 * 185.00258 * 4 2 1 34 34 H 1.09001 * 109.46801 * 60.00026 * 10 8 7 35 35 H 1.09001 * 109.46998 * 179.97438 * 10 8 7 36 36 H 1.09000 * 109.47050 * 299.99913 * 10 8 7 37 37 H 1.08992 * 109.47575 * 89.99119 * 14 13 11 38 38 H 1.08994 * 109.47305 * 210.00451 * 14 13 11 39 39 H 1.09007 * 109.46469 * 329.99619 * 14 13 11 40 40 H 1.08994 * 109.47263 * 210.00467 * 15 13 11 41 41 H 1.09002 * 109.46810 * 330.00361 * 15 13 11 42 42 H 0.96998 * 120.00457 * 179.97438 * 19 18 16 43 43 H 1.07991 * 126.59056 * 359.97438 * 25 24 2 44 44 H 1.08000 * 125.98571 * 180.12365 * 26 25 24 45 45 H 1.07999 * 125.64339 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0140 1.0835 -2.3637 7 8 1.9830 -0.3900 -3.6952 8 6 1.5659 0.4110 -4.8322 9 1 0.6378 0.9290 -4.5908 10 6 2.6526 1.4374 -5.1590 11 6 1.3461 -0.4846 -6.0240 12 8 1.6101 -1.6661 -5.9516 13 7 0.8562 0.0274 -7.1704 14 6 0.5379 1.4547 -7.2582 15 6 0.6430 -0.8431 -8.3294 16 6 -0.7524 -1.4102 -8.2816 17 1 -1.4144 -1.1481 -7.4695 18 6 -1.1840 -2.2637 -9.2746 19 7 -0.3778 -2.5834 -10.2634 20 14 -2.9139 -2.9662 -9.2158 21 1 -3.6146 -2.4560 -8.0100 22 1 -3.6575 -2.5532 -10.4331 23 1 -2.8445 -4.4485 -9.1574 24 7 2.0183 -0.6906 1.1961 25 6 2.8129 -0.1569 2.1746 26 6 3.0184 -1.1295 3.0832 27 7 2.3746 -2.2298 2.6661 28 6 1.7734 -1.9743 1.5363 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -1.7198 -1.2952 33 1 3.1263 -0.7994 -1.2056 34 1 3.5808 0.9194 -5.4004 35 1 2.3397 2.0385 -6.0128 36 1 2.8116 2.0852 -4.2969 37 1 1.4153 2.0023 -7.6021 38 1 -0.2812 1.6017 -7.9621 39 1 0.2425 1.8221 -6.2753 40 1 0.7696 -0.2661 -9.2454 41 1 1.3671 -1.6576 -8.3100 42 1 -0.6813 -3.1841 -10.9618 43 1 3.1989 0.8510 2.2120 44 1 3.6033 -1.0406 3.9867 45 1 1.1788 -2.6739 0.9676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845279294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:29 Heat of formation + Delta-G solvation = -49.918708 kcal Electronic energy + Delta-G solvation = -27294.277304 eV Core-core repulsion = 23313.885073 eV Total energy + Delta-G solvation = -3980.392231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.40755 -40.96001 -39.16088 -37.08332 -35.81296 -35.01438 -32.98726 -31.89712 -31.22845 -29.55859 -28.70132 -27.76640 -26.25915 -24.72479 -23.90774 -22.66965 -21.66187 -21.22889 -20.26453 -18.97287 -18.38063 -17.22605 -16.83631 -16.64744 -16.57911 -15.85780 -15.57753 -15.41464 -14.86802 -14.66067 -14.41697 -14.13937 -14.09738 -13.73780 -13.65806 -13.37908 -13.18073 -12.98818 -12.58304 -12.40036 -12.25829 -12.13107 -12.00484 -11.82072 -11.72781 -11.52096 -11.27436 -10.97150 -10.86110 -10.73284 -10.63965 -10.23233 -10.21895 -9.96764 -9.70218 -9.01564 -8.79209 -8.51034 -7.81650 -6.11907 -4.17138 1.73336 1.87787 2.05447 2.65319 2.93894 3.15653 3.25275 3.33373 3.37138 3.75960 3.89483 4.17732 4.37419 4.41078 4.46627 4.56437 4.62910 4.74864 4.86763 4.89991 4.97114 5.02896 5.15112 5.22883 5.27243 5.34324 5.42089 5.44417 5.52506 5.54382 5.73232 5.76855 5.88693 5.99392 6.12944 6.25682 6.46131 6.87455 6.89879 7.31158 7.37289 7.47500 7.81973 7.83791 8.13100 8.19882 8.76221 8.91359 9.48240 10.96288 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.002531 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.768986 B =11058.630612 C =11871.286767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.147 3.853 3 H 0.112 0.888 4 C -0.128 4.128 5 C 0.470 3.530 6 O -0.508 6.508 7 O -0.321 6.321 8 C 0.070 3.930 9 H 0.107 0.893 10 C -0.170 4.170 11 C 0.507 3.493 12 O -0.519 6.519 13 N -0.595 5.595 14 C 0.076 3.924 15 C 0.246 3.754 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 N -0.455 5.455 25 C -0.055 4.055 26 C -0.032 4.032 27 N -0.495 5.495 28 C 0.184 3.816 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.046 0.954 42 H 0.264 0.736 43 H 0.173 0.827 44 H 0.169 0.831 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.845 11.026 19.340 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.044 3.956 3 H 0.130 0.870 4 C -0.166 4.166 5 C 0.313 3.687 6 O -0.398 6.398 7 O -0.236 6.236 8 C 0.012 3.988 9 H 0.125 0.875 10 C -0.228 4.228 11 C 0.292 3.708 12 O -0.394 6.394 13 N -0.328 5.328 14 C -0.068 4.068 15 C 0.128 3.872 16 C -0.568 4.568 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.208 1.208 24 N -0.138 5.138 25 C -0.188 4.188 26 C -0.179 4.179 27 N -0.213 5.213 28 C -0.098 4.098 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.191 0.809 44 H 0.186 0.814 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.744 9.906 19.467 22.585 hybrid contribution -1.014 0.556 -0.569 1.289 sum 4.729 10.462 18.898 22.112 Atomic orbital electron populations 1.22342 0.92022 1.03639 1.04872 1.21169 0.96517 0.96824 0.81097 0.87014 1.21688 1.05109 1.01059 0.88753 1.23181 0.76199 0.84021 0.85312 1.90642 1.37595 1.24480 1.87037 1.86610 1.70998 1.51873 1.14091 1.22693 1.00363 0.91690 0.84082 0.87508 1.22285 0.98852 0.98128 1.03486 1.19741 0.79320 0.88208 0.83571 1.90713 1.50576 1.15883 1.82269 1.48084 1.61963 1.09301 1.13494 1.21851 1.00897 0.82018 1.02039 1.19373 0.97510 0.89475 0.80878 1.21439 0.98281 1.28279 1.08785 0.92387 1.24939 0.97934 0.95995 0.95214 1.69935 1.35756 1.35467 1.12050 0.86426 0.83990 0.79046 0.77862 1.19802 1.20886 1.20788 1.45718 1.38093 1.11601 1.18413 1.22775 1.02251 1.01442 0.92336 1.22322 1.04636 0.89626 1.01347 1.70331 1.12375 1.28110 1.10511 1.24986 1.03675 0.85251 0.95882 0.91613 0.91405 0.88477 0.86344 0.86602 0.90898 0.89149 0.91311 0.93079 0.90214 0.92379 0.94549 0.93622 0.92653 0.80936 0.81409 0.78021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 8.98 37.15 0.33 -0.98 16 2 C 0.15 1.08 2.70 -67.94 -0.18 0.90 16 3 H 0.11 0.77 7.90 -51.93 -0.41 0.36 16 4 C -0.13 -1.04 5.28 -27.88 -0.15 -1.19 16 5 C 0.47 5.48 7.65 36.00 0.28 5.75 16 6 O -0.51 -6.36 13.19 -18.75 -0.25 -6.61 16 7 O -0.32 -4.80 9.42 -45.88 -0.43 -5.23 16 8 C 0.07 1.06 2.16 -27.88 -0.06 1.00 16 9 H 0.11 1.53 6.14 -51.93 -0.32 1.21 16 10 C -0.17 -1.99 9.27 37.16 0.34 -1.65 16 11 C 0.51 10.36 7.10 -10.99 -0.08 10.28 16 12 O -0.52 -13.02 16.09 -14.05 -0.23 -13.24 16 13 N -0.59 -12.08 2.86 -182.95 -0.52 -12.60 16 14 C 0.08 1.11 8.92 59.85 0.53 1.64 16 15 C 0.25 6.24 5.16 -5.19 -0.03 6.21 16 16 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 17 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 20 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 N -0.45 -3.72 2.62 -111.46 -0.29 -4.02 16 25 C -0.06 -0.44 11.54 -16.56 -0.19 -0.63 16 26 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 27 N -0.50 -5.77 11.25 -14.66 -0.16 -5.93 16 28 C 0.18 1.73 11.65 -90.37 -1.05 0.68 16 29 H 0.06 0.47 7.95 -51.93 -0.41 0.05 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.90 5.96 -51.93 -0.31 0.59 16 32 H 0.12 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.94 5.12 -51.93 -0.27 0.67 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.61 7.02 -51.93 -0.36 0.25 16 38 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 39 H 0.06 0.70 6.07 -51.92 -0.32 0.39 16 40 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.20 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -35.60 377.38 -7.91 -43.51 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.54 Total: -0.89 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.88 Total: 8.14 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.24 Total: -47.86 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.91 Total: -25.08 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.60 -7.91 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845279294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.404 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds