Wall clock time and date at job start Tue Mar 31 2020 14:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47185 * 2 1 4 4 O 1.45202 * 109.46838 * 240.00915 * 2 1 3 5 5 C 1.34227 * 117.00465 * 89.99460 * 4 2 1 6 6 O 1.20827 * 119.99570 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99913 * 179.97438 * 5 4 2 8 8 C 1.53008 * 109.46781 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.47216 * 55.00115 * 8 7 5 10 10 C 1.53005 * 109.46912 * 295.00279 * 8 7 5 11 11 N 1.46500 * 109.46921 * 175.00576 * 8 7 5 12 12 C 1.36885 * 126.39286 * 239.99693 * 11 8 7 13 13 C 1.34665 * 106.81493 * 179.97438 * 12 11 8 14 14 N 1.34129 * 108.02445 * 0.02562 * 13 12 11 15 15 C 1.30498 * 109.25189 * 359.97438 * 14 13 12 16 16 C 1.50690 * 109.47299 * 120.00837 * 2 1 3 17 17 O 1.21283 * 120.00290 * 119.99613 * 16 2 1 18 18 N 1.34777 * 119.99928 * 299.99909 * 16 2 1 19 19 C 1.46494 * 119.99960 * 359.97438 * 18 16 2 20 20 C 1.46502 * 120.00024 * 180.02562 * 18 16 2 21 21 C 1.50702 * 109.47126 * 89.99830 * 20 18 16 22 22 H 1.08001 * 120.00300 * 359.97438 * 21 20 18 23 23 C 1.37879 * 119.99977 * 179.97438 * 21 20 18 24 24 N 1.31513 * 120.00105 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00087 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46583 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46833 * 119.99783 * 25 23 21 28 28 H 1.48495 * 109.47098 * 240.00243 * 25 23 21 29 29 H 1.09000 * 109.47246 * 59.99271 * 1 2 3 30 30 H 1.08996 * 109.47546 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46865 * 299.99414 * 1 2 3 32 32 H 1.08997 * 109.47037 * 60.00908 * 7 5 4 33 33 H 1.08993 * 109.47581 * 300.00176 * 7 5 4 34 34 H 1.08996 * 109.47046 * 299.99941 * 10 8 7 35 35 H 1.08991 * 109.47042 * 60.00040 * 10 8 7 36 36 H 1.09000 * 109.46506 * 180.02562 * 10 8 7 37 37 H 1.07999 * 126.59054 * 359.73997 * 12 11 8 38 38 H 1.08008 * 125.98738 * 179.97438 * 13 12 11 39 39 H 1.08006 * 125.64605 * 179.97438 * 15 14 13 40 40 H 1.09009 * 109.46889 * 90.00386 * 19 18 16 41 41 H 1.09003 * 109.47419 * 210.00110 * 19 18 16 42 42 H 1.09001 * 109.47558 * 330.00711 * 19 18 16 43 43 H 1.08999 * 109.47235 * 209.99413 * 20 18 16 44 44 H 1.08992 * 109.47259 * 330.00058 * 20 18 16 45 45 H 0.96997 * 120.00563 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6843 -1.1857 5 6 2.2170 0.0642 -2.2812 6 8 1.9980 1.2521 -2.2503 7 6 2.7191 -0.5767 -3.5493 8 6 2.8641 0.4896 -4.6369 9 1 3.5035 1.2943 -4.2740 10 6 1.4849 1.0525 -4.9864 11 7 3.4639 -0.1097 -5.8316 12 6 4.6415 0.2613 -6.4224 13 6 4.8152 -0.5462 -7.4860 14 7 3.7717 -1.3870 -7.5435 15 6 2.9584 -1.1315 -6.5555 16 6 2.0323 -0.7105 1.2303 17 8 2.7296 -1.6966 1.1189 18 7 1.7068 -0.2502 2.4544 19 6 0.8650 0.9412 2.5890 20 6 2.1956 -0.9407 3.6505 21 6 3.5230 -0.3566 4.0604 22 1 3.9592 0.4480 3.4871 23 6 4.1807 -0.8496 5.1674 24 7 3.6495 -1.8291 5.8659 25 14 5.8265 -0.1262 5.6752 26 1 6.2037 0.9561 4.7310 27 1 5.7206 0.4288 7.0485 28 1 6.8634 -1.1888 5.6491 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.0102 -1.3369 -3.8776 33 1 3.6882 -1.0397 -3.3635 34 1 0.8454 0.2479 -5.3493 35 1 1.0386 1.4983 -4.0976 36 1 1.5882 1.8118 -5.7615 37 1 5.3023 1.0524 -6.1000 38 1 5.6483 -0.5206 -8.1730 39 1 2.0337 -1.6508 -6.3510 40 1 -0.1831 0.6436 2.6222 41 1 1.1229 1.4663 3.5087 42 1 1.0288 1.6000 1.7363 43 1 1.4778 -0.8155 4.4612 44 1 2.3171 -2.0018 3.4334 45 1 4.1123 -2.1762 6.6445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845279296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:34 Heat of formation + Delta-G solvation = -68.700132 kcal Electronic energy + Delta-G solvation = -27271.623956 eV Core-core repulsion = 23290.417301 eV Total energy + Delta-G solvation = -3981.206655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.06701 -42.00719 -40.63390 -38.10172 -36.76624 -36.56519 -34.94603 -33.15336 -32.01288 -30.22732 -29.67539 -29.21642 -27.73565 -26.01752 -24.98070 -24.00195 -22.41834 -22.12876 -20.99188 -20.47427 -19.25320 -18.71833 -18.16558 -18.04350 -17.52969 -17.18351 -16.81250 -16.44812 -16.14533 -16.07691 -15.43737 -15.12524 -14.79075 -14.71060 -14.52226 -14.34635 -14.28433 -14.22467 -13.85285 -13.71508 -13.54587 -13.35014 -13.11107 -12.91288 -12.79479 -12.63823 -12.61237 -12.42392 -12.34120 -12.22804 -11.91650 -11.71572 -11.64140 -10.93156 -10.67951 -10.67437 -10.61629 -9.53421 -9.44615 -8.25899 -6.40442 0.94868 1.04375 1.23747 1.35003 1.37491 1.48628 1.60745 1.86278 2.24221 2.32089 2.44402 3.04332 3.25271 3.37982 3.49508 3.63134 3.78104 3.85013 3.87958 4.00007 4.04328 4.30248 4.31699 4.43724 4.53396 4.59253 4.63843 4.66705 4.70563 4.76905 4.84971 4.88169 4.94118 5.10671 5.14050 5.18430 5.30231 5.39270 5.49399 5.76081 5.82614 6.01165 6.25421 6.47319 6.61504 6.68893 7.15033 7.18966 7.34115 8.81577 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017451 B = 0.002514 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.139746 B =11132.845007 C =12034.790473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.081 3.919 3 H 0.118 0.882 4 O -0.344 6.344 5 C 0.472 3.528 6 O -0.516 6.516 7 C -0.121 4.121 8 C 0.153 3.847 9 H 0.111 0.889 10 C -0.164 4.164 11 N -0.453 5.453 12 C -0.053 4.053 13 C -0.055 4.055 14 N -0.536 5.536 15 C 0.179 3.821 16 C 0.497 3.503 17 O -0.581 6.581 18 N -0.599 5.599 19 C 0.067 3.933 20 C 0.259 3.741 21 C -0.545 4.545 22 H 0.052 0.948 23 C 0.009 3.991 24 N -0.926 5.926 25 Si 0.967 3.033 26 H -0.268 1.268 27 H -0.268 1.268 28 H -0.282 1.282 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.140 0.860 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.197 0.803 38 H 0.180 0.820 39 H 0.228 0.772 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.033 0.967 44 H 0.000 1.000 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 9.343 -21.325 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.023 3.977 3 H 0.136 0.864 4 O -0.260 6.260 5 C 0.315 3.685 6 O -0.405 6.405 7 C -0.159 4.159 8 C 0.050 3.950 9 H 0.129 0.871 10 C -0.221 4.221 11 N -0.136 5.136 12 C -0.186 4.186 13 C -0.202 4.202 14 N -0.255 5.255 15 C -0.103 4.103 16 C 0.284 3.716 17 O -0.461 6.461 18 N -0.332 5.332 19 C -0.074 4.074 20 C 0.138 3.862 21 C -0.583 4.583 22 H 0.070 0.930 23 C -0.190 4.190 24 N -0.566 5.566 25 Si 0.791 3.209 26 H -0.192 1.192 27 H -0.193 1.193 28 H -0.208 1.208 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.158 0.842 33 H 0.134 0.866 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.214 0.786 38 H 0.197 0.803 39 H 0.244 0.756 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.051 0.949 44 H 0.018 0.982 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.370 8.550 -21.634 24.401 hybrid contribution 1.246 0.558 1.357 1.925 sum -6.124 9.108 -20.277 23.057 Atomic orbital electron populations 1.22416 0.89078 1.04552 1.06364 1.22524 0.97892 0.96637 0.80613 0.86402 1.86613 1.76810 1.42441 1.20090 1.23726 0.73701 0.85681 0.85382 1.90638 1.48850 1.16684 1.84298 1.21746 1.05976 1.00035 0.88118 1.21150 0.97984 0.94317 0.81583 0.87059 1.22272 0.93780 1.02345 1.03738 1.45745 1.18160 1.27334 1.22361 1.23195 0.91311 1.05521 0.98530 1.22659 0.99957 0.96798 1.00786 1.70286 1.05323 1.26973 1.22905 1.25444 1.01907 0.92281 0.90663 1.20755 0.80669 0.84884 0.85305 1.90674 1.39702 1.28839 1.86913 1.48047 1.50106 1.29559 1.05445 1.22255 0.94725 0.86250 1.04180 1.18844 0.93961 0.91785 0.81562 1.21709 1.05958 1.19197 1.11475 0.92960 1.25836 1.01744 0.95229 0.96225 1.70039 1.40597 1.27112 1.18817 0.85382 0.78776 0.78278 0.78461 1.19231 1.19258 1.20815 0.88851 0.91439 0.87165 0.84234 0.86612 0.90355 0.89439 0.91372 0.78639 0.80292 0.75587 0.89582 0.90804 0.89109 0.94862 0.98165 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 9.18 71.98 0.66 -2.70 16 2 C 0.08 2.35 2.18 29.84 0.07 2.41 16 3 H 0.12 3.13 6.41 -2.39 -0.02 3.11 16 4 O -0.34 -9.89 9.41 -45.04 -0.42 -10.31 16 5 C 0.47 10.09 7.65 71.24 0.54 10.64 16 6 O -0.52 -11.70 13.19 21.96 0.29 -11.41 16 7 C -0.12 -1.71 5.29 29.85 0.16 -1.55 16 8 C 0.15 1.90 2.70 45.00 0.12 2.02 16 9 H 0.11 1.45 7.90 -2.39 -0.02 1.43 16 10 C -0.16 -1.77 8.99 71.98 0.65 -1.12 16 11 N -0.45 -6.59 2.62 -506.53 -1.33 -7.92 16 12 C -0.05 -0.81 11.54 83.08 0.96 0.15 16 13 C -0.06 -1.04 11.87 83.52 0.99 -0.05 16 14 N -0.54 -11.95 11.25 -200.31 -2.25 -14.20 16 15 C 0.18 2.93 11.65 180.26 2.10 5.03 16 16 C 0.50 20.54 7.15 87.65 0.63 21.17 16 17 O -0.58 -30.58 16.08 15.76 0.25 -30.33 16 18 N -0.60 -24.42 2.86 -851.14 -2.43 -26.85 16 19 C 0.07 1.82 8.80 127.77 1.12 2.94 16 20 C 0.26 13.63 5.16 85.63 0.44 14.07 16 21 C -0.54 -30.91 9.39 25.60 0.24 -30.67 16 22 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 23 C 0.01 0.51 5.46 84.66 0.46 0.97 16 24 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 25 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 1.83 4.53 -2.39 -0.01 1.82 16 32 H 0.14 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.12 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.08 0.63 7.95 -2.39 -0.02 0.61 16 35 H 0.09 1.16 5.96 -2.39 -0.01 1.14 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.23 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.09 1.77 6.95 -2.38 -0.02 1.75 16 41 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 42 H 0.09 1.88 6.01 -2.39 -0.01 1.86 16 43 H 0.03 1.74 8.07 -2.39 -0.02 1.72 16 44 H 0.00 0.01 7.42 -2.39 -0.02 0.00 16 45 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -81.17 376.77 6.56 -74.61 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.99 Total: 11.57 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 9.14 Total: 23.31 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -5.73 Total: -103.84 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: 0.12 Total: -52.05 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -81.17 6.56 -74.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845279296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.914 kcal (2) G-P(sol) polarization free energy of solvation -81.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds