Wall clock time and date at job start Tue Mar 31 2020 14:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47446 * 2 1 4 4 O 1.45195 * 109.47057 * 120.00366 * 2 1 3 5 5 C 1.34226 * 116.99927 * 269.99438 * 4 2 1 6 6 O 1.20823 * 120.00320 * 0.02562 * 5 4 2 7 7 C 1.50708 * 120.00122 * 180.02562 * 5 4 2 8 8 C 1.52995 * 109.47362 * 180.02562 * 7 5 4 9 9 H 1.09005 * 109.46850 * 305.00148 * 8 7 5 10 10 C 1.53001 * 109.47132 * 64.99725 * 8 7 5 11 11 N 1.46498 * 109.47571 * 184.99995 * 8 7 5 12 12 C 1.36878 * 126.40148 * 119.70884 * 11 8 7 13 13 C 1.34661 * 106.81836 * 179.84501 * 12 11 8 14 14 N 1.34130 * 108.02351 * 0.42466 * 13 12 11 15 15 C 1.30500 * 109.25223 * 359.73087 * 14 13 12 16 16 C 1.50702 * 109.46573 * 240.00234 * 2 1 3 17 17 O 1.21287 * 120.00026 * 248.56697 * 16 2 1 18 18 N 1.34777 * 120.00006 * 68.56890 * 16 2 1 19 19 C 1.46494 * 120.00251 * 4.58150 * 18 16 2 20 20 C 1.46502 * 119.99457 * 184.58146 * 18 16 2 21 21 C 1.50703 * 109.47152 * 90.00340 * 20 18 16 22 22 H 1.07993 * 119.99827 * 359.97438 * 21 20 18 23 23 C 1.37880 * 119.99900 * 179.97438 * 21 20 18 24 24 N 1.31512 * 119.99780 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99712 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46883 * 89.99960 * 25 23 21 27 27 H 1.48503 * 109.46762 * 210.00013 * 25 23 21 28 28 H 1.48495 * 109.46928 * 329.99890 * 25 23 21 29 29 H 1.09001 * 109.46492 * 307.15208 * 1 2 3 30 30 H 1.08994 * 109.47320 * 67.14708 * 1 2 3 31 31 H 1.08995 * 109.47043 * 187.15367 * 1 2 3 32 32 H 1.08998 * 109.46798 * 300.00098 * 7 5 4 33 33 H 1.08998 * 109.46748 * 59.99715 * 7 5 4 34 34 H 1.09002 * 109.47379 * 300.00298 * 10 8 7 35 35 H 1.08994 * 109.47218 * 60.00116 * 10 8 7 36 36 H 1.09000 * 109.47130 * 180.02562 * 10 8 7 37 37 H 1.08006 * 126.58471 * 359.97438 * 12 11 8 38 38 H 1.08005 * 125.99024 * 180.12265 * 13 12 11 39 39 H 1.07998 * 125.65248 * 179.97438 * 15 14 13 40 40 H 1.09003 * 109.47023 * 86.11538 * 19 18 16 41 41 H 1.08998 * 109.47309 * 206.11783 * 19 18 16 42 42 H 1.08999 * 109.46890 * 326.12304 * 19 18 16 43 43 H 1.09007 * 109.46486 * 210.00025 * 20 18 16 44 44 H 1.08991 * 109.47700 * 329.99871 * 20 18 16 45 45 H 0.97001 * 119.99582 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0639 2.2810 6 8 1.9976 1.2516 2.2506 7 6 2.7194 -0.5772 3.5491 8 6 2.8635 0.4887 4.6371 9 1 3.5025 1.2939 4.2746 10 6 1.4839 1.0506 4.9865 11 7 3.4634 -0.1106 5.8317 12 6 4.6434 0.2573 6.4198 13 6 4.8142 -0.5463 7.4867 14 7 3.7716 -1.3884 7.5432 15 6 2.9585 -1.1332 6.5549 16 6 2.0322 -0.7104 -1.2305 17 8 2.5962 -1.7791 -1.1261 18 7 1.8547 -0.1581 -2.4471 19 6 1.2644 1.1773 -2.5663 20 6 2.2522 -0.8935 -3.6503 21 6 1.0931 -1.7247 -4.1368 22 1 0.1545 -1.7074 -3.6029 23 6 1.2310 -2.5074 -5.2635 24 7 2.3739 -2.5281 -5.9139 25 14 -0.2055 -3.5383 -5.8661 26 1 -1.0192 -2.7434 -6.8207 27 1 0.3088 -4.7540 -6.5466 28 1 -1.0479 -3.9371 -4.7100 29 1 -0.3632 0.6207 0.8191 30 1 -0.3633 0.3991 -0.9469 31 1 -0.3633 -1.0196 0.1280 32 1 2.0106 -1.3374 3.8773 33 1 3.6885 -1.0402 3.3630 34 1 1.0374 1.4965 4.0977 35 1 0.8448 0.2455 5.3490 36 1 1.5865 1.8103 5.7613 37 1 5.3085 1.0427 6.0922 38 1 5.6473 -0.5209 8.1736 39 1 2.0349 -1.6539 6.3492 40 1 2.0471 1.9302 -2.4732 41 1 0.7799 1.2750 -3.5378 42 1 0.5270 1.3203 -1.7764 43 1 2.5444 -0.1873 -4.4276 44 1 3.0938 -1.5452 -3.4164 45 1 2.4710 -3.0790 -6.7063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845279297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:37 Heat of formation + Delta-G solvation = -68.149526 kcal Electronic energy + Delta-G solvation = -27237.410652 eV Core-core repulsion = 23256.227873 eV Total energy + Delta-G solvation = -3981.182779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.06113 -42.00403 -40.62360 -38.10587 -36.74376 -36.55447 -34.89841 -33.18866 -32.00814 -30.21790 -29.70981 -29.25595 -27.65863 -26.03753 -24.98326 -24.01574 -22.40899 -22.11647 -20.98255 -20.45599 -19.22923 -18.70182 -18.17359 -18.06234 -17.47721 -17.20434 -16.78813 -16.32622 -16.24799 -16.07409 -15.57382 -15.11380 -14.79390 -14.70644 -14.52945 -14.35526 -14.29406 -14.14928 -13.79543 -13.69088 -13.59862 -13.33146 -13.14373 -12.95993 -12.82077 -12.62922 -12.60707 -12.37061 -12.33449 -12.20379 -11.92556 -11.72788 -11.63283 -10.92334 -10.67822 -10.65192 -10.61457 -9.53000 -9.43822 -8.24143 -6.38969 0.96037 1.03898 1.24184 1.37336 1.40384 1.49977 1.59002 1.86944 2.24795 2.33373 2.44998 3.06253 3.26278 3.37430 3.50126 3.63697 3.77584 3.83733 3.88591 4.00927 4.04563 4.23465 4.30813 4.44451 4.55568 4.59458 4.59985 4.65400 4.70792 4.77147 4.85437 4.86584 4.93373 5.12503 5.15042 5.19389 5.30405 5.39770 5.50673 5.77075 5.83639 6.01944 6.25734 6.47538 6.61654 6.70342 7.15790 7.19072 7.34968 8.83384 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.002295 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.706624 B =12199.783528 C =12526.058592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.083 3.917 3 H 0.126 0.874 4 O -0.344 6.344 5 C 0.472 3.528 6 O -0.514 6.514 7 C -0.122 4.122 8 C 0.153 3.847 9 H 0.115 0.885 10 C -0.165 4.165 11 N -0.453 5.453 12 C -0.051 4.051 13 C -0.056 4.056 14 N -0.537 5.537 15 C 0.178 3.822 16 C 0.498 3.502 17 O -0.581 6.581 18 N -0.600 5.600 19 C 0.060 3.940 20 C 0.258 3.742 21 C -0.543 4.543 22 H 0.059 0.941 23 C 0.007 3.993 24 N -0.928 5.928 25 Si 0.969 3.031 26 H -0.263 1.263 27 H -0.283 1.283 28 H -0.271 1.271 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.137 0.863 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.199 0.801 38 H 0.180 0.820 39 H 0.226 0.774 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.029 0.971 44 H -0.001 1.001 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 11.940 21.656 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.025 3.975 3 H 0.143 0.857 4 O -0.260 6.260 5 C 0.315 3.685 6 O -0.403 6.403 7 C -0.160 4.160 8 C 0.050 3.950 9 H 0.133 0.867 10 C -0.222 4.222 11 N -0.136 5.136 12 C -0.184 4.184 13 C -0.203 4.203 14 N -0.255 5.255 15 C -0.104 4.104 16 C 0.285 3.715 17 O -0.461 6.461 18 N -0.332 5.332 19 C -0.081 4.081 20 C 0.137 3.863 21 C -0.582 4.582 22 H 0.077 0.923 23 C -0.192 4.192 24 N -0.568 5.568 25 Si 0.793 3.207 26 H -0.187 1.187 27 H -0.209 1.209 28 H -0.195 1.195 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.155 0.845 33 H 0.136 0.864 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.216 0.784 38 H 0.197 0.803 39 H 0.242 0.758 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.047 0.953 44 H 0.017 0.983 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.789 11.152 21.963 24.790 hybrid contribution -0.010 -0.159 -1.442 1.451 sum -2.799 10.993 20.521 23.448 Atomic orbital electron populations 1.22311 0.89785 1.04330 1.05731 1.22519 0.97422 0.96965 0.80587 0.85697 1.86638 1.76724 1.42472 1.20146 1.23720 0.73726 0.85682 0.85334 1.90634 1.48777 1.16620 1.84249 1.21751 1.06011 1.00033 0.88158 1.21149 0.97933 0.94335 0.81535 0.86746 1.22277 0.93872 1.02309 1.03772 1.45751 1.18057 1.27335 1.22440 1.23206 0.91144 1.05606 0.98426 1.22667 0.99957 0.96894 1.00781 1.70287 1.05409 1.26934 1.22899 1.25421 1.01923 0.92258 0.90816 1.20752 0.79782 0.85712 0.85291 1.90669 1.44291 1.24313 1.86813 1.48054 1.60623 1.18889 1.05651 1.22309 0.99340 0.81544 1.04919 1.18854 0.94976 0.91188 0.81235 1.21689 0.98738 1.26934 1.10797 0.92319 1.25880 0.98899 0.97793 0.96661 1.70053 1.26159 1.41133 1.19453 0.85393 0.78791 0.78079 0.78429 1.18742 1.20891 1.19546 0.88162 0.88205 0.91731 0.84537 0.86403 0.89415 0.90567 0.91327 0.78447 0.80290 0.75767 0.90883 0.90328 0.88254 0.95254 0.98306 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.14 71.98 0.66 -3.06 16 2 C 0.08 2.39 2.16 29.85 0.06 2.46 16 3 H 0.13 3.06 6.73 -2.39 -0.02 3.05 16 4 O -0.34 -9.78 9.43 -45.07 -0.42 -10.21 16 5 C 0.47 9.68 7.65 71.24 0.54 10.23 16 6 O -0.51 -11.01 13.19 21.97 0.29 -10.72 16 7 C -0.12 -1.64 5.29 29.85 0.16 -1.48 16 8 C 0.15 1.78 2.70 44.99 0.12 1.91 16 9 H 0.11 1.32 7.90 -2.38 -0.02 1.30 16 10 C -0.16 -1.73 8.98 71.98 0.65 -1.08 16 11 N -0.45 -6.30 2.62 -506.56 -1.33 -7.63 16 12 C -0.05 -0.74 11.54 83.09 0.96 0.22 16 13 C -0.06 -1.03 11.87 83.52 0.99 -0.04 16 14 N -0.54 -11.82 11.25 -200.31 -2.25 -14.07 16 15 C 0.18 2.88 11.65 180.26 2.10 4.98 16 16 C 0.50 20.57 7.03 87.66 0.62 21.19 16 17 O -0.58 -30.47 16.08 15.59 0.25 -30.21 16 18 N -0.60 -24.61 2.86 -851.13 -2.43 -27.04 16 19 C 0.06 1.67 9.80 127.77 1.25 2.92 16 20 C 0.26 13.63 5.18 85.63 0.44 14.07 16 21 C -0.54 -30.35 9.39 25.60 0.24 -30.11 16 22 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 23 C 0.01 0.38 5.46 84.66 0.46 0.85 16 24 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 25 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 26 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 2.11 5.46 -2.39 -0.01 2.09 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.14 1.32 8.08 -2.39 -0.02 1.31 16 33 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.13 5.96 -2.39 -0.01 1.12 16 35 H 0.08 0.62 7.95 -2.39 -0.02 0.60 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 37 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.23 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 2.23 8.04 -2.39 -0.02 2.21 16 42 H 0.10 2.06 4.31 -2.39 -0.01 2.05 16 43 H 0.03 1.56 8.07 -2.38 -0.02 1.54 16 44 H 0.00 -0.07 7.36 -2.39 -0.02 -0.09 16 45 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -80.26 378.26 6.67 -73.59 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.99 Total: 12.47 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 9.26 Total: 23.05 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -5.73 Total: -103.79 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: 0.12 Total: -51.14 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -80.26 6.67 -73.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845279297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.442 kcal (2) G-P(sol) polarization free energy of solvation -80.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds