Wall clock time and date at job start Tue Mar 31 2020 13:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47102 * 2 1 4 4 N 1.46504 * 109.47190 * 179.97438 * 3 2 1 5 5 N 1.28441 * 125.19316 * 269.69767 * 4 3 2 6 6 C 1.30884 * 110.94242 * 180.26622 * 5 4 3 7 7 C 1.39644 * 107.87860 * 359.97438 * 6 5 4 8 8 C 1.36653 * 125.19625 * 90.00007 * 4 3 2 9 9 C 1.47003 * 126.89293 * 359.75595 * 8 4 3 10 10 O 1.21553 * 120.00029 * 180.02562 * 9 8 4 11 11 O 1.34816 * 120.00362 * 0.02562 * 9 8 4 12 12 C 1.45195 * 117.00491 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47014 * 29.99973 * 12 11 9 14 14 C 1.53006 * 109.47200 * 270.00424 * 12 11 9 15 15 C 1.50701 * 109.47476 * 150.00040 * 12 11 9 16 16 O 1.21281 * 119.99640 * 16.07428 * 15 12 11 17 17 N 1.34771 * 119.99886 * 196.07376 * 15 12 11 18 18 C 1.46496 * 120.00393 * 5.36510 * 17 15 12 19 19 C 1.46504 * 119.99762 * 185.36165 * 17 15 12 20 20 C 1.50700 * 109.47380 * 90.00332 * 19 17 15 21 21 H 1.08007 * 119.99648 * 359.97438 * 20 19 17 22 22 C 1.37875 * 120.00410 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99643 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00147 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47061 * 60.00315 * 24 22 20 26 26 H 1.48500 * 109.46978 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47539 * 299.99794 * 24 22 20 28 28 H 1.09001 * 109.47034 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47539 * 300.00310 * 1 2 3 30 30 H 1.08997 * 109.46994 * 60.00488 * 1 2 3 31 31 H 1.09005 * 109.46884 * 239.99818 * 2 1 3 32 32 H 1.08999 * 109.46898 * 120.00048 * 2 1 3 33 33 H 1.08992 * 109.47301 * 59.99998 * 3 2 1 34 34 H 1.08999 * 109.47283 * 299.99812 * 3 2 1 35 35 H 1.07993 * 126.05611 * 179.97438 * 6 5 4 36 36 H 1.07997 * 127.32474 * 180.02562 * 7 6 5 37 37 H 1.09005 * 109.46790 * 306.12786 * 14 12 11 38 38 H 1.08993 * 109.47318 * 66.12563 * 14 12 11 39 39 H 1.09002 * 109.46822 * 186.12974 * 14 12 11 40 40 H 1.09003 * 109.47116 * 84.81547 * 18 17 15 41 41 H 1.09001 * 109.47016 * 204.81607 * 18 17 15 42 42 H 1.08997 * 109.47288 * 324.81461 * 18 17 15 43 43 H 1.09000 * 109.47190 * 210.00621 * 19 17 15 44 44 H 1.08999 * 109.46981 * 330.00111 * 19 17 15 45 45 H 0.96998 * 119.99792 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.2448 1.4482 1.0506 6 6 5.5135 1.4521 0.7289 7 6 5.6024 1.4481 -0.6647 8 6 4.2931 1.4423 -1.1158 9 6 3.8416 1.4371 -2.5147 10 8 4.6568 1.4371 -3.4164 11 8 2.5235 1.4323 -2.7977 12 6 2.1505 1.4279 -4.2009 13 1 2.9189 0.9151 -4.7795 14 6 2.0150 2.8689 -4.6972 15 6 0.8345 0.7129 -4.3687 16 8 0.1271 0.5107 -3.4045 17 7 0.4438 0.2983 -5.5901 18 6 1.3478 0.4366 -6.7345 19 6 -0.8850 -0.2907 -5.7733 20 6 -1.8754 0.7963 -6.1027 21 1 -1.5478 1.8234 -6.1686 22 6 -3.1998 0.4800 -6.3190 23 7 -3.5988 -0.7706 -6.2383 24 14 -4.4274 1.8276 -6.7267 25 1 -4.0133 2.5125 -7.9776 26 1 -5.7743 1.2304 -6.9125 27 1 -4.4705 2.8109 -5.6148 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 6.3442 1.4576 1.4189 36 1 6.5012 1.4493 -1.2635 37 1 1.3267 3.4127 -4.0501 38 1 2.9912 3.3531 -4.6778 39 1 1.6303 2.8672 -5.7171 40 1 2.0213 -0.4197 -6.7710 41 1 0.7651 0.4800 -7.6547 42 1 1.9297 1.3522 -6.6294 43 1 -0.8531 -1.0126 -6.5893 44 1 -1.1893 -0.7934 -4.8553 45 1 -4.5304 -0.9932 -6.3908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850238186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:43 Heat of formation + Delta-G solvation = -41.579304 kcal Electronic energy + Delta-G solvation = -28494.133407 eV Core-core repulsion = 24514.102799 eV Total energy + Delta-G solvation = -3980.030608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.75317 -40.56248 -38.93345 -36.59839 -35.40875 -34.96207 -32.91949 -31.96283 -31.60025 -30.92394 -27.85992 -26.61316 -26.15523 -25.08325 -23.85018 -22.33776 -22.02283 -21.56941 -20.28686 -18.92111 -18.39703 -17.05204 -16.63882 -16.45302 -16.42935 -15.65609 -15.54184 -15.34607 -15.01564 -14.68006 -14.39426 -14.02725 -13.68521 -13.63431 -13.24576 -13.15440 -12.92183 -12.45076 -12.25093 -12.14590 -12.12273 -11.93660 -11.82562 -11.51848 -11.31248 -11.30044 -11.22706 -10.99058 -10.88363 -10.73577 -10.66011 -10.59690 -10.23894 -9.74327 -9.45429 -9.24189 -9.00608 -8.51219 -7.79834 -6.12434 -4.18186 0.86028 2.13525 2.35659 2.38765 2.77224 3.14212 3.26318 3.31398 3.34217 3.77850 4.26279 4.36610 4.46858 4.73463 4.79235 4.86562 4.93136 4.99864 5.01775 5.21433 5.22426 5.25912 5.45175 5.46961 5.55192 5.56880 5.60790 5.68493 5.79288 5.80261 6.00391 6.09949 6.15883 6.18468 6.18874 6.25211 6.48829 6.57607 6.91247 7.32346 7.38325 7.47598 7.82899 7.84883 8.12513 8.20980 8.75265 8.90648 9.47231 10.95544 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.003473 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.212599 B = 8060.482206 C = 8959.800750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.112 3.888 4 N -0.254 5.254 5 N -0.265 5.265 6 C -0.012 4.012 7 C -0.152 4.152 8 C -0.028 4.028 9 C 0.539 3.461 10 O -0.493 6.493 11 O -0.325 6.325 12 C 0.071 3.929 13 H 0.104 0.896 14 C -0.166 4.166 15 C 0.511 3.489 16 O -0.518 6.518 17 N -0.595 5.595 18 C 0.072 3.928 19 C 0.247 3.753 20 C -0.531 4.531 21 H 0.057 0.943 22 C 0.063 3.937 23 N -0.893 5.893 24 Si 0.898 3.102 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.190 0.810 36 H 0.166 0.834 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.035 0.965 44 H 0.047 0.953 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.949 4.593 8.671 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.007 4.007 4 N -0.044 5.044 5 N -0.099 5.099 6 C -0.186 4.186 7 C -0.180 4.180 8 C -0.154 4.154 9 C 0.382 3.618 10 O -0.380 6.380 11 O -0.241 6.241 12 C 0.012 3.988 13 H 0.122 0.878 14 C -0.223 4.223 15 C 0.295 3.705 16 O -0.394 6.394 17 N -0.328 5.328 18 C -0.072 4.072 19 C 0.129 3.871 20 C -0.570 4.570 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.531 5.531 24 Si 0.726 3.274 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.207 0.793 36 H 0.184 0.816 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.708 4.347 9.723 18.160 hybrid contribution -0.048 0.697 -1.199 1.388 sum 14.661 5.044 8.524 17.693 Atomic orbital electron populations 1.21667 0.93105 1.02907 1.02930 1.21759 0.97984 0.94051 1.02686 1.22490 0.71373 1.00726 1.06091 1.46223 1.08151 1.48265 1.01772 1.73207 1.04327 1.18404 1.13999 1.23607 0.93595 1.06808 0.94606 1.22185 0.95178 1.05449 0.95215 1.20652 0.91905 1.16694 0.86110 1.19742 0.81433 0.73114 0.87515 1.90871 1.54608 1.46061 1.46427 1.86694 1.24396 1.83412 1.29550 1.22767 0.97653 0.99106 0.79238 0.87781 1.22178 1.03408 0.93529 1.03174 1.19676 0.86265 0.80252 0.84288 1.90660 1.54894 1.55444 1.38356 1.48070 1.18280 1.60343 1.06118 1.21847 0.94035 1.00257 0.91013 1.19358 0.75721 0.93714 0.98334 1.21374 0.93144 0.93969 1.48516 0.92427 1.24927 0.98188 0.95642 0.95201 1.69919 1.17029 1.17076 1.49119 0.86554 0.80149 0.81831 0.78868 1.20213 1.21136 1.20145 0.92054 0.93076 0.90070 0.91023 0.91799 0.88061 0.86343 0.79328 0.81627 0.90625 0.91171 0.89288 0.93368 0.90018 0.92242 0.94704 0.93525 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.13 -1.61 6.26 -26.73 -0.17 -1.78 16 3 C 0.11 1.36 5.77 -4.04 -0.02 1.34 16 4 N -0.25 -3.29 3.35 -57.16 -0.19 -3.48 16 5 N -0.26 -3.31 11.90 30.58 0.36 -2.94 16 6 C -0.01 -0.12 12.03 -17.43 -0.21 -0.33 16 7 C -0.15 -1.69 10.85 -38.97 -0.42 -2.11 16 8 C -0.03 -0.38 6.96 -82.08 -0.57 -0.95 16 9 C 0.54 7.92 7.91 34.28 0.27 8.19 16 10 O -0.49 -7.75 16.18 -19.31 -0.31 -8.06 16 11 O -0.33 -5.02 6.94 -47.34 -0.33 -5.35 16 12 C 0.07 1.09 2.14 -27.88 -0.06 1.03 16 13 H 0.10 1.50 6.31 -51.93 -0.33 1.18 16 14 C -0.17 -2.20 9.19 37.16 0.34 -1.86 16 15 C 0.51 10.05 6.95 -10.99 -0.08 9.97 16 16 O -0.52 -11.86 15.47 -13.54 -0.21 -12.07 16 17 N -0.59 -11.90 2.86 -182.96 -0.52 -12.43 16 18 C 0.07 1.08 9.79 59.84 0.59 1.67 16 19 C 0.25 6.15 5.18 -5.19 -0.03 6.12 16 20 C -0.53 -14.33 9.39 -34.44 -0.32 -14.65 16 21 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 24 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.30 7.47 -51.93 -0.39 0.91 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.12 1.55 6.16 -51.93 -0.32 1.23 16 35 H 0.19 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.13 6.33 -51.93 -0.33 0.80 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 42 H 0.06 0.74 4.92 -51.93 -0.26 0.48 16 43 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 44 H 0.05 1.31 7.35 -51.93 -0.38 0.93 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -32.18 380.66 -6.77 -38.95 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.61 Total: 1.81 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -0.41 Total: 6.72 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.39 Total: -43.79 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.85 Total: -25.47 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.18 -6.77 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850238186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.631 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds