Wall clock time and date at job start Tue Mar 31 2020 13:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47257 * 2 1 4 4 N 1.46497 * 109.47536 * 179.97438 * 3 2 1 5 5 N 1.28444 * 125.19728 * 270.26982 * 4 3 2 6 6 C 1.30871 * 110.94462 * 180.15982 * 5 4 3 7 7 C 1.39647 * 107.87862 * 359.60830 * 6 5 4 8 8 C 1.36654 * 125.19382 * 89.99500 * 4 3 2 9 9 C 1.47008 * 126.89553 * 359.97438 * 8 4 3 10 10 O 1.21544 * 120.00006 * 180.02562 * 9 8 4 11 11 O 1.34813 * 119.99875 * 359.97438 * 9 8 4 12 12 C 1.45198 * 117.00211 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47494 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00005 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00020 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00143 * 359.97438 * 15 13 12 17 17 C 1.53008 * 109.46918 * 90.00174 * 16 15 13 18 18 C 1.46501 * 119.99971 * 179.97438 * 15 13 12 19 19 C 1.50704 * 109.47196 * 89.99963 * 18 15 13 20 20 H 1.07998 * 119.99899 * 0.02562 * 19 18 15 21 21 C 1.37874 * 119.99915 * 179.97438 * 19 18 15 22 22 N 1.31517 * 120.00018 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99754 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47208 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47204 * 120.00122 * 23 21 19 26 26 H 1.48496 * 109.46888 * 239.99831 * 23 21 19 27 27 H 1.09004 * 109.47416 * 300.00106 * 1 2 3 28 28 H 1.08994 * 109.47422 * 60.00170 * 1 2 3 29 29 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47209 * 239.99678 * 2 1 3 31 31 H 1.09006 * 109.47263 * 119.99439 * 2 1 3 32 32 H 1.09004 * 109.46994 * 59.99636 * 3 2 1 33 33 H 1.09006 * 109.46526 * 299.99890 * 3 2 1 34 34 H 1.08002 * 126.06310 * 179.87831 * 6 5 4 35 35 H 1.07998 * 127.31826 * 180.25096 * 7 6 5 36 36 H 1.09000 * 109.46653 * 300.00234 * 12 11 9 37 37 H 1.09001 * 109.47527 * 59.99371 * 12 11 9 38 38 H 1.08997 * 109.47136 * 210.00211 * 16 15 13 39 39 H 1.08999 * 109.46899 * 330.00515 * 16 15 13 40 40 H 1.09003 * 109.47050 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.47247 * 299.99968 * 17 16 15 42 42 H 1.08999 * 109.47058 * 60.00438 * 17 16 15 43 43 H 1.09006 * 109.47221 * 209.99969 * 18 15 13 44 44 H 1.08999 * 109.47304 * 329.99805 * 18 15 13 45 45 H 0.97005 * 119.99501 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 7 4.2449 1.4378 1.0505 6 6 5.5134 1.4428 0.7289 7 6 5.6023 1.4425 -0.6648 8 6 4.2930 1.4424 -1.1158 9 6 3.8415 1.4415 -2.5148 10 8 4.6566 1.4409 -3.4165 11 8 2.5234 1.4403 -2.7977 12 6 2.1503 1.4389 -4.2009 13 6 0.6481 1.4383 -4.3214 14 8 -0.0403 1.4385 -3.3229 15 7 0.0697 1.4375 -5.5387 16 6 0.9013 1.4378 -6.7448 17 6 1.1918 -0.0047 -7.1643 18 6 -1.3906 1.4364 -5.6558 19 6 -1.8924 2.8569 -5.6963 20 1 -1.1934 3.6783 -5.6408 21 6 -3.2438 3.1077 -5.8053 22 7 -4.0949 2.1074 -5.8733 23 14 -3.8657 4.8684 -5.8562 24 1 -2.7152 5.8027 -5.7634 25 1 -4.5909 5.1005 -7.1312 26 1 -4.7855 5.1017 -4.7140 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8901 34 1 6.3443 1.4423 1.4189 35 1 6.5012 1.4421 -1.2635 36 1 2.5529 2.3288 -4.6847 37 1 2.5542 0.5489 -4.6835 38 1 0.3745 1.9511 -7.5492 39 1 1.8399 1.9523 -6.5389 40 1 1.8101 -0.0045 -8.0620 41 1 1.7187 -0.5179 -6.3599 42 1 0.2532 -0.5192 -7.3703 43 1 -1.6813 0.9221 -6.5719 44 1 -1.8235 0.9225 -4.7976 45 1 -5.0456 2.2840 -5.9503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850240035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:34 Heat of formation + Delta-G solvation = -45.541046 kcal Electronic energy + Delta-G solvation = -28134.202365 eV Core-core repulsion = 24153.999964 eV Total energy + Delta-G solvation = -3980.202402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.75409 -40.42075 -38.98335 -36.60251 -35.44020 -35.36769 -32.91104 -31.68515 -31.36073 -30.24955 -29.19783 -26.76727 -26.52512 -24.12364 -23.14403 -22.53225 -22.15815 -21.60345 -20.33954 -18.79097 -18.33897 -17.09644 -16.86773 -16.56511 -16.34516 -15.80393 -15.66613 -15.41612 -15.12003 -14.53656 -14.38628 -14.03774 -13.71367 -13.53227 -13.38088 -13.21991 -12.98086 -12.76086 -12.23802 -12.13478 -12.10400 -11.98928 -11.71655 -11.36653 -11.31037 -11.24163 -11.02459 -10.95071 -10.79154 -10.74038 -10.66416 -10.61046 -10.21134 -9.71196 -9.45688 -9.24523 -9.10684 -8.51321 -7.83995 -6.12368 -4.17392 0.85268 2.12082 2.34382 2.38900 2.76107 3.14135 3.24926 3.33150 3.36927 3.74756 4.27265 4.37780 4.49180 4.75110 4.76328 4.85843 4.96067 5.06023 5.10319 5.21175 5.22651 5.26314 5.29417 5.44593 5.51473 5.55909 5.60609 5.66249 5.75765 5.92664 6.01191 6.08730 6.10979 6.12957 6.24483 6.38255 6.45666 6.54103 6.91240 7.31211 7.37673 7.45588 7.83442 7.84843 8.13088 8.20295 8.75124 8.90956 9.48118 10.95706 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.003460 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.593364 B = 8090.778598 C = 8965.496748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.109 3.891 4 N -0.253 5.253 5 N -0.265 5.265 6 C -0.012 4.012 7 C -0.151 4.151 8 C -0.029 4.029 9 C 0.540 3.460 10 O -0.494 6.494 11 O -0.328 6.328 12 C 0.049 3.951 13 C 0.508 3.492 14 O -0.519 6.519 15 N -0.590 5.590 16 C 0.101 3.899 17 C -0.170 4.170 18 C 0.249 3.751 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.893 5.893 23 Si 0.898 3.102 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.190 0.810 35 H 0.166 0.834 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.045 0.955 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.451 -3.971 7.023 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.010 4.010 4 N -0.044 5.044 5 N -0.099 5.099 6 C -0.186 4.186 7 C -0.180 4.180 8 C -0.154 4.154 9 C 0.382 3.618 10 O -0.380 6.380 11 O -0.243 6.243 12 C -0.028 4.028 13 C 0.293 3.707 14 O -0.395 6.395 15 N -0.323 5.323 16 C -0.023 4.023 17 C -0.229 4.229 18 C 0.130 3.870 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.140 4.140 22 N -0.532 5.532 23 Si 0.726 3.274 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.208 1.208 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.207 0.793 35 H 0.184 0.816 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.187 -4.009 8.102 17.674 hybrid contribution 0.269 0.962 -1.021 1.428 sum 15.456 -3.047 7.080 17.271 Atomic orbital electron populations 1.21708 0.93158 1.02614 1.03504 1.21762 0.97907 0.94241 1.02551 1.22536 0.71281 1.00557 1.06578 1.46235 1.08176 1.48214 1.01752 1.73205 1.04327 1.18352 1.14021 1.23609 0.93602 1.06808 0.94602 1.22183 0.95154 1.05437 0.95216 1.20635 0.91915 1.16784 0.86065 1.19721 0.81127 0.73353 0.87550 1.90886 1.54729 1.45936 1.46447 1.86625 1.24552 1.83675 1.29478 1.23067 0.96188 1.04559 0.79019 1.19622 0.87613 0.78803 0.84674 1.90675 1.64081 1.48904 1.35813 1.48207 1.09663 1.70991 1.03465 1.21528 0.94928 0.96645 0.89243 1.22233 1.02212 0.97451 1.00982 1.19336 0.71611 0.97656 0.98367 1.21450 0.92203 0.92213 1.50880 0.92349 1.24924 0.96626 0.97456 0.94991 1.69938 1.02639 1.30664 1.49961 0.86445 0.78863 0.84506 0.77630 1.19801 1.20927 1.20837 0.92743 0.89936 0.92212 0.91294 0.91717 0.87971 0.85863 0.79320 0.81616 0.88407 0.88473 0.89354 0.91726 0.91838 0.93142 0.91766 0.94672 0.93650 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.15 0.37 -1.52 16 2 C -0.13 -1.52 6.26 -26.73 -0.17 -1.68 16 3 C 0.11 1.35 5.78 -4.04 -0.02 1.33 16 4 N -0.25 -3.30 3.35 -57.15 -0.19 -3.49 16 5 N -0.26 -3.31 11.90 30.58 0.36 -2.95 16 6 C -0.01 -0.12 12.03 -17.43 -0.21 -0.33 16 7 C -0.15 -1.67 10.85 -38.97 -0.42 -2.10 16 8 C -0.03 -0.38 6.96 -82.07 -0.57 -0.95 16 9 C 0.54 7.85 7.93 34.28 0.27 8.12 16 10 O -0.49 -7.69 16.71 -19.30 -0.32 -8.01 16 11 O -0.33 -5.02 7.22 -47.49 -0.34 -5.37 16 12 C 0.05 0.73 4.51 36.00 0.16 0.89 16 13 C 0.51 9.78 7.75 -10.99 -0.09 9.70 16 14 O -0.52 -11.78 15.67 -14.10 -0.22 -12.00 16 15 N -0.59 -11.53 2.46 -175.05 -0.43 -11.96 16 16 C 0.10 1.49 5.93 -4.04 -0.02 1.46 16 17 C -0.17 -2.12 10.24 37.16 0.38 -1.74 16 18 C 0.25 6.10 5.16 -5.19 -0.03 6.08 16 19 C -0.53 -14.31 9.39 -34.44 -0.32 -14.63 16 20 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 23 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.28 7.73 -51.93 -0.40 0.88 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.12 1.72 6.15 -51.93 -0.32 1.40 16 34 H 0.19 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.10 1.33 7.39 -51.93 -0.38 0.94 16 37 H 0.10 1.26 7.18 -51.93 -0.37 0.89 16 38 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 39 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 44 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -32.21 384.52 -7.16 -39.37 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.76 Total: 1.05 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -0.77 Total: 6.24 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.48 Total: -43.29 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.89 Total: -25.38 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.21 -7.16 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850240035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.171 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds