Wall clock time and date at job start Tue Mar 31 2020 13:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47257 * 2 1 4 4 N 1.46497 * 109.47536 * 179.97438 * 3 2 1 5 5 N 1.28444 * 125.19728 * 270.26982 * 4 3 2 6 6 C 1.30871 * 110.94462 * 180.15982 * 5 4 3 7 7 C 1.39647 * 107.87862 * 359.60830 * 6 5 4 8 8 C 1.36654 * 125.19382 * 89.99500 * 4 3 2 9 9 C 1.47008 * 126.89553 * 359.97438 * 8 4 3 10 10 O 1.21544 * 120.00006 * 180.02562 * 9 8 4 11 11 O 1.34813 * 119.99875 * 359.97438 * 9 8 4 12 12 C 1.45198 * 117.00211 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47494 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00005 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00020 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00143 * 359.97438 * 15 13 12 17 17 C 1.53008 * 109.46918 * 90.00174 * 16 15 13 18 18 C 1.46501 * 119.99971 * 179.97438 * 15 13 12 19 19 C 1.50704 * 109.47196 * 89.99963 * 18 15 13 20 20 H 1.07998 * 119.99899 * 0.02562 * 19 18 15 21 21 C 1.37874 * 119.99915 * 179.97438 * 19 18 15 22 22 N 1.31517 * 120.00018 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99754 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47208 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47204 * 120.00122 * 23 21 19 26 26 H 1.48496 * 109.46888 * 239.99831 * 23 21 19 27 27 H 1.09004 * 109.47416 * 300.00106 * 1 2 3 28 28 H 1.08994 * 109.47422 * 60.00170 * 1 2 3 29 29 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47209 * 239.99678 * 2 1 3 31 31 H 1.09006 * 109.47263 * 119.99439 * 2 1 3 32 32 H 1.09004 * 109.46994 * 59.99636 * 3 2 1 33 33 H 1.09006 * 109.46526 * 299.99890 * 3 2 1 34 34 H 1.08002 * 126.06310 * 179.87831 * 6 5 4 35 35 H 1.07998 * 127.31826 * 180.25096 * 7 6 5 36 36 H 1.09000 * 109.46653 * 300.00234 * 12 11 9 37 37 H 1.09001 * 109.47527 * 59.99371 * 12 11 9 38 38 H 1.08997 * 109.47136 * 210.00211 * 16 15 13 39 39 H 1.08999 * 109.46899 * 330.00515 * 16 15 13 40 40 H 1.09003 * 109.47050 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.47247 * 299.99968 * 17 16 15 42 42 H 1.08999 * 109.47058 * 60.00438 * 17 16 15 43 43 H 1.09006 * 109.47221 * 209.99969 * 18 15 13 44 44 H 1.08999 * 109.47304 * 329.99805 * 18 15 13 45 45 H 0.97005 * 119.99501 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 7 4.2449 1.4378 1.0505 6 6 5.5134 1.4428 0.7289 7 6 5.6023 1.4425 -0.6648 8 6 4.2930 1.4424 -1.1158 9 6 3.8415 1.4415 -2.5148 10 8 4.6566 1.4409 -3.4165 11 8 2.5234 1.4403 -2.7977 12 6 2.1503 1.4389 -4.2009 13 6 0.6481 1.4383 -4.3214 14 8 -0.0403 1.4385 -3.3229 15 7 0.0697 1.4375 -5.5387 16 6 0.9013 1.4378 -6.7448 17 6 1.1918 -0.0047 -7.1643 18 6 -1.3906 1.4364 -5.6558 19 6 -1.8924 2.8569 -5.6963 20 1 -1.1934 3.6783 -5.6408 21 6 -3.2438 3.1077 -5.8053 22 7 -4.0949 2.1074 -5.8733 23 14 -3.8657 4.8684 -5.8562 24 1 -2.7152 5.8027 -5.7634 25 1 -4.5909 5.1005 -7.1312 26 1 -4.7855 5.1017 -4.7140 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8901 34 1 6.3443 1.4423 1.4189 35 1 6.5012 1.4421 -1.2635 36 1 2.5529 2.3288 -4.6847 37 1 2.5542 0.5489 -4.6835 38 1 0.3745 1.9511 -7.5492 39 1 1.8399 1.9523 -6.5389 40 1 1.8101 -0.0045 -8.0620 41 1 1.7187 -0.5179 -6.3599 42 1 0.2532 -0.5192 -7.3703 43 1 -1.6813 0.9221 -6.5719 44 1 -1.8235 0.9225 -4.7976 45 1 -5.0456 2.2840 -5.9503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850240035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:33 Heat of formation + Delta-G solvation = -63.624597 kcal Electronic energy + Delta-G solvation = -28134.986527 eV Core-core repulsion = 24153.999964 eV Total energy + Delta-G solvation = -3980.986563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.66376 -41.62914 -40.46628 -37.79421 -36.94926 -36.38991 -34.93114 -32.63422 -32.34326 -31.70875 -30.57069 -28.45521 -27.54716 -25.42549 -24.62300 -23.98437 -23.12665 -22.53263 -21.38890 -20.25754 -19.39178 -18.63835 -18.29379 -17.96282 -17.77567 -17.13990 -16.79485 -16.60331 -16.30128 -16.11682 -15.81402 -15.03437 -14.81128 -14.73514 -14.60603 -14.40367 -14.18613 -13.94762 -13.91659 -13.59066 -13.27529 -13.14178 -13.03607 -12.98273 -12.70244 -12.51609 -12.38924 -12.27781 -12.24994 -12.09181 -11.86934 -11.77597 -11.68972 -11.67852 -10.69864 -10.64630 -10.40643 -10.12163 -9.51833 -8.22986 -6.36874 -0.15448 1.00841 1.36759 1.37747 1.39215 1.47765 1.50263 1.64012 1.80405 2.29120 2.42929 3.07482 3.27438 3.40919 3.53649 3.78401 3.86237 3.94769 3.98208 4.09146 4.15045 4.23103 4.38135 4.38982 4.49328 4.57106 4.58994 4.73658 4.82515 4.87626 4.94921 4.98476 5.01208 5.04835 5.10459 5.21978 5.35326 5.36342 5.44359 5.55815 5.63254 5.80603 6.05022 6.31666 6.62817 6.73056 6.95488 7.22633 7.37850 8.84293 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.003460 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.593364 B = 8090.778598 C = 8965.496748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.112 3.888 4 N -0.263 5.263 5 N -0.282 5.282 6 C -0.001 4.001 7 C -0.140 4.140 8 C -0.056 4.056 9 C 0.544 3.456 10 O -0.506 6.506 11 O -0.339 6.339 12 C 0.060 3.940 13 C 0.501 3.499 14 O -0.563 6.563 15 N -0.595 5.595 16 C 0.094 3.906 17 C -0.163 4.163 18 C 0.266 3.734 19 C -0.542 4.542 20 H 0.054 0.946 21 C 0.011 3.989 22 N -0.926 5.926 23 Si 0.964 3.036 24 H -0.268 1.268 25 H -0.271 1.271 26 H -0.282 1.282 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.229 0.771 35 H 0.188 0.812 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.026 0.974 44 H 0.003 0.997 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.072 -3.274 7.289 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.007 4.007 4 N -0.054 5.054 5 N -0.116 5.116 6 C -0.175 4.175 7 C -0.169 4.169 8 C -0.181 4.181 9 C 0.388 3.612 10 O -0.393 6.393 11 O -0.255 6.255 12 C -0.016 4.016 13 C 0.288 3.712 14 O -0.442 6.442 15 N -0.328 5.328 16 C -0.028 4.028 17 C -0.221 4.221 18 C 0.145 3.855 19 C -0.580 4.580 20 H 0.072 0.928 21 C -0.189 4.189 22 N -0.566 5.566 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.196 1.196 26 H -0.208 1.208 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.245 0.755 35 H 0.205 0.795 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.021 0.979 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.844 -3.317 8.335 19.972 hybrid contribution -0.473 0.710 -1.064 1.364 sum 17.372 -2.606 7.271 19.011 Atomic orbital electron populations 1.21627 0.93695 1.02643 1.02425 1.21649 0.97245 0.94221 1.02311 1.22419 0.71648 1.00439 1.06170 1.46211 1.08129 1.49174 1.01850 1.73207 1.05396 1.18908 1.14071 1.24303 0.93675 1.04666 0.94905 1.22584 0.94864 1.03590 0.95870 1.20800 0.93016 1.18677 0.85583 1.19882 0.80455 0.72795 0.88110 1.90867 1.54720 1.46865 1.46870 1.86643 1.25431 1.83889 1.29521 1.22936 0.92467 1.06678 0.79565 1.20357 0.89580 0.77530 0.83778 1.90660 1.65621 1.50689 1.37260 1.48170 1.08201 1.70881 1.05507 1.21851 0.95222 0.98719 0.87050 1.22175 1.01910 0.95392 1.02647 1.18757 0.74895 0.95984 0.95866 1.21728 0.92559 0.93081 1.50678 0.92778 1.25788 0.96899 1.01619 0.94550 1.70049 1.03015 1.32800 1.50738 0.85419 0.78280 0.79487 0.77929 1.19210 1.19610 1.20830 0.91110 0.93587 0.91649 0.92834 0.90414 0.86648 0.87970 0.75462 0.79494 0.86350 0.85935 0.90135 0.88456 0.88541 0.92395 0.93728 0.95570 0.97883 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.91 71.98 0.71 -3.07 16 2 C -0.12 -2.82 6.26 30.59 0.19 -2.63 16 3 C 0.11 2.81 5.78 86.38 0.50 3.31 16 4 N -0.26 -6.62 3.35 -334.73 -1.12 -7.74 16 5 N -0.28 -6.50 11.90 -57.15 -0.68 -7.18 16 6 C 0.00 -0.02 12.03 85.18 1.02 1.00 16 7 C -0.14 -2.73 10.85 22.67 0.25 -2.48 16 8 C -0.06 -1.43 6.96 40.75 0.28 -1.14 16 9 C 0.54 15.29 7.93 70.12 0.56 15.84 16 10 O -0.51 -14.84 16.71 19.69 0.33 -14.51 16 11 O -0.34 -10.38 7.22 -50.86 -0.37 -10.74 16 12 C 0.06 1.74 4.51 71.24 0.32 2.06 16 13 C 0.50 19.72 7.75 87.66 0.68 20.40 16 14 O -0.56 -27.04 15.67 15.77 0.25 -26.79 16 15 N -0.60 -23.74 2.46 -826.13 -2.03 -25.77 16 16 C 0.09 2.67 5.93 86.38 0.51 3.18 16 17 C -0.16 -3.80 10.24 71.98 0.74 -3.06 16 18 C 0.27 13.67 5.16 85.63 0.44 14.11 16 19 C -0.54 -30.15 9.39 25.60 0.24 -29.91 16 20 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 21 C 0.01 0.60 5.46 84.65 0.46 1.06 16 22 N -0.93 -54.60 13.29 21.45 0.28 -54.31 16 23 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 27 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.04 1.54 7.73 -2.39 -0.02 1.52 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.12 2.48 8.14 -2.38 -0.02 2.47 16 33 H 0.10 3.01 6.15 -2.38 -0.01 2.99 16 34 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.19 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.12 2.96 7.39 -2.39 -0.02 2.94 16 37 H 0.12 2.93 7.18 -2.39 -0.02 2.91 16 38 H 0.08 2.42 8.07 -2.39 -0.02 2.41 16 39 H 0.10 2.15 6.44 -2.39 -0.02 2.13 16 40 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.03 1.38 8.07 -2.38 -0.02 1.36 16 44 H 0.00 0.18 7.42 -2.39 -0.02 0.16 16 45 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -72.62 384.52 6.59 -66.03 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.99 Total: 16.35 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 6.91 Total: 18.67 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -3.55 Total: -95.00 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: 0.21 Total: -52.05 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -72.62 6.59 -66.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850240035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.409 kcal (2) G-P(sol) polarization free energy of solvation -72.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds