Wall clock time and date at job start Tue Mar 31 2020 14:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46997 * 2 1 4 4 C 1.34217 * 125.74308 * 125.29205 * 3 2 1 5 5 C 1.38122 * 107.40904 * 180.15940 * 4 3 2 6 6 C 1.47284 * 126.42983 * 179.83761 * 5 4 3 7 7 O 1.21522 * 120.00295 * 179.69052 * 6 5 4 8 8 O 1.34757 * 120.00208 * 359.68555 * 6 5 4 9 9 C 1.45204 * 117.00268 * 180.02562 * 8 6 5 10 10 H 1.08992 * 109.46991 * 30.00314 * 9 8 6 11 11 C 1.52998 * 109.46952 * 270.00132 * 9 8 6 12 12 C 1.50701 * 109.46886 * 150.00232 * 9 8 6 13 13 O 1.21281 * 120.00127 * 16.02194 * 12 9 8 14 14 N 1.34778 * 119.99638 * 196.02970 * 12 9 8 15 15 C 1.46494 * 120.00128 * 5.36492 * 14 12 9 16 16 C 1.46499 * 119.99700 * 185.36122 * 14 12 9 17 17 C 1.50702 * 109.46860 * 89.99917 * 16 14 12 18 18 H 1.07999 * 120.00293 * 0.02562 * 17 16 14 19 19 C 1.37886 * 120.00009 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99573 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99940 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47239 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46705 * 120.00367 * 21 19 17 24 24 H 1.48502 * 109.47091 * 240.00102 * 21 19 17 25 25 C 1.41339 * 107.14422 * 359.57102 * 5 4 3 26 26 C 1.50701 * 125.99574 * 180.28089 * 25 5 4 27 27 N 1.30434 * 108.01539 * 0.26502 * 25 5 4 28 28 H 1.09002 * 109.46967 * 300.00128 * 1 2 3 29 29 H 1.08996 * 109.47284 * 59.99959 * 1 2 3 30 30 H 1.09004 * 109.47069 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46967 * 239.99872 * 2 1 3 32 32 H 1.09005 * 109.47171 * 119.99824 * 2 1 3 33 33 H 1.08000 * 126.29872 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.47393 * 66.13987 * 11 9 8 35 35 H 1.08997 * 109.47092 * 306.13550 * 11 9 8 36 36 H 1.09000 * 109.46733 * 186.13756 * 11 9 8 37 37 H 1.08998 * 109.47479 * 84.82343 * 15 14 12 38 38 H 1.09002 * 109.47016 * 204.82429 * 15 14 12 39 39 H 1.09000 * 109.46810 * 324.81906 * 15 14 12 40 40 H 1.09003 * 109.47348 * 209.99678 * 16 14 12 41 41 H 1.09008 * 109.47508 * 330.00271 * 16 14 12 42 42 H 0.96998 * 119.99687 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.47127 * 90.00392 * 26 25 5 44 44 H 1.08998 * 109.47538 * 210.00201 * 26 25 5 45 45 H 1.08998 * 109.47257 * 330.00735 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9107 0.8892 5 6 3.0705 3.2315 0.5367 6 6 3.9308 4.2033 1.2330 7 8 4.0235 5.3410 0.8159 8 8 4.6150 3.8310 2.3326 9 6 5.4426 4.8411 2.9676 10 1 5.0038 5.8254 2.8043 11 6 6.8478 4.8025 2.3638 12 6 5.5238 4.5665 4.4471 13 8 5.2000 3.4813 4.8811 14 7 5.9561 5.5270 5.2880 15 6 6.2350 6.8729 4.7813 16 6 6.1471 5.2250 6.7087 17 6 7.5575 4.7445 6.9349 18 1 8.2431 4.6717 6.1036 19 6 7.9729 4.3986 8.2034 20 7 7.1381 4.4877 9.2157 21 14 9.7208 3.8023 8.4836 22 1 10.4535 3.7923 7.1920 23 1 10.4077 4.7125 9.4348 24 1 9.6909 2.4286 9.0469 25 6 2.2971 3.4738 -0.6213 26 6 2.2054 4.7797 -1.3678 27 7 1.6769 2.3688 -0.9307 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3214 1.3990 1.7280 34 1 6.8026 5.1075 1.3182 35 1 7.2439 3.7892 2.4299 36 1 7.4981 5.4834 2.9130 37 1 5.3113 7.4512 4.7583 38 1 6.9555 7.3650 5.4346 39 1 6.6458 6.8040 3.7740 40 1 5.9709 6.1247 7.2984 41 1 5.4455 4.4481 7.0126 42 1 7.4302 4.2440 10.1080 43 1 2.9771 4.8135 -2.1369 44 1 1.2238 4.8635 -1.8342 45 1 2.3490 5.6066 -0.6724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860203922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:59 Heat of formation + Delta-G solvation = -44.484036 kcal Electronic energy + Delta-G solvation = -27379.422417 eV Core-core repulsion = 23399.265851 eV Total energy + Delta-G solvation = -3980.156566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.69376 -40.21717 -38.75148 -36.25893 -35.07662 -34.85745 -32.83720 -31.92638 -31.51757 -30.26086 -28.04848 -27.76892 -26.04587 -24.83599 -23.99223 -22.95712 -22.08555 -20.80386 -19.68740 -18.72858 -17.91690 -17.03961 -16.57468 -16.38174 -16.12965 -15.70269 -15.59118 -15.03119 -14.69350 -14.42573 -14.34494 -14.24451 -13.53992 -13.35655 -13.19486 -13.05063 -12.72059 -12.65657 -12.43249 -12.32974 -12.15948 -12.11979 -12.05806 -11.80405 -11.69336 -11.34835 -11.23948 -11.07917 -10.90300 -10.66296 -10.53674 -10.32661 -10.18560 -9.64489 -9.60858 -8.96106 -8.87981 -8.46740 -7.70689 -6.07374 -4.12508 1.21285 1.87142 1.98587 2.67080 3.14233 3.27152 3.28000 3.35930 3.40367 3.92437 4.03462 4.41755 4.46714 4.49500 4.55084 4.75023 4.84750 4.90742 5.04828 5.16029 5.17862 5.21346 5.27313 5.30725 5.31905 5.51769 5.57163 5.63789 5.72545 5.76568 5.78978 5.83671 5.89560 6.12139 6.26109 6.29005 6.53539 6.57447 7.00369 7.32998 7.40157 7.47930 7.88079 7.92975 8.18956 8.31132 8.84230 8.99692 9.52662 11.00763 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.002727 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.703517 B =10264.792275 C =11165.605594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.359 5.359 4 C 0.136 3.864 5 C -0.281 4.281 6 C 0.543 3.457 7 O -0.517 6.517 8 O -0.327 6.327 9 C 0.074 3.926 10 H 0.103 0.897 11 C -0.164 4.164 12 C 0.511 3.489 13 O -0.523 6.523 14 N -0.597 5.597 15 C 0.074 3.926 16 C 0.245 3.755 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.137 3.863 26 C -0.079 4.079 27 N -0.301 5.301 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.195 0.805 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.263 0.737 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 -3.404 -20.260 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.004 3.996 3 N -0.136 5.136 4 C -0.017 4.017 5 C -0.294 4.294 6 C 0.388 3.612 7 O -0.407 6.407 8 O -0.243 6.243 9 C 0.015 3.985 10 H 0.121 0.879 11 C -0.221 4.221 12 C 0.295 3.705 13 O -0.399 6.399 14 N -0.330 5.330 15 C -0.070 4.070 16 C 0.126 3.874 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.030 4.030 26 C -0.137 4.137 27 N -0.122 5.122 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.212 0.788 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.920 -4.406 -20.716 23.829 hybrid contribution 1.672 0.082 0.948 1.924 sum -9.248 -4.325 -19.767 22.248 Atomic orbital electron populations 1.22059 0.93299 1.03183 1.03842 1.21894 0.96560 0.76591 1.04528 1.48576 1.33861 1.10686 1.20470 1.23449 0.90579 0.93629 0.94010 1.19306 1.12246 0.94016 1.03784 1.20028 0.76881 0.86059 0.78229 1.90765 1.63584 1.20592 1.65731 1.86658 1.55817 1.42198 1.39592 1.22617 0.91914 0.92196 0.91774 0.87921 1.22156 0.94133 1.04400 1.01457 1.19787 0.79029 0.85264 0.86374 1.90675 1.48046 1.23532 1.77645 1.48070 1.64374 1.09329 1.11255 1.21835 1.00804 0.84625 0.99774 1.19369 0.97478 0.97448 0.73082 1.21471 0.96852 1.44610 0.93745 0.92294 1.24945 0.97871 0.95431 0.95870 1.69944 1.35047 1.48347 0.99920 0.86432 0.84239 0.78523 0.78168 1.19760 1.20944 1.20863 1.22475 0.92391 0.95257 0.92911 1.20374 1.02777 0.90625 0.99945 1.77148 1.24789 0.96582 1.13724 0.91792 0.90973 0.90362 0.89175 0.87862 0.78771 0.91185 0.90782 0.89591 0.93400 0.90125 0.92174 0.94639 0.93588 0.92715 0.90054 0.90846 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.09 37.16 0.37 -0.59 16 2 C 0.12 0.76 7.21 -4.04 -0.03 0.73 16 3 N -0.36 -3.66 3.65 -60.79 -0.22 -3.88 16 4 C 0.14 1.52 11.29 -16.55 -0.19 1.33 16 5 C -0.28 -3.80 6.13 -105.08 -0.64 -4.44 16 6 C 0.54 8.42 7.93 34.41 0.27 8.70 16 7 O -0.52 -8.38 14.18 -19.28 -0.27 -8.65 16 8 O -0.33 -5.59 9.30 -47.17 -0.44 -6.03 16 9 C 0.07 1.25 2.14 -27.88 -0.06 1.19 16 10 H 0.10 1.61 6.31 -51.93 -0.33 1.29 16 11 C -0.16 -2.39 9.19 37.16 0.34 -2.04 16 12 C 0.51 10.98 6.95 -10.98 -0.08 10.91 16 13 O -0.52 -13.42 16.13 -13.54 -0.22 -13.64 16 14 N -0.60 -12.73 2.86 -182.95 -0.52 -13.25 16 15 C 0.07 1.17 9.79 59.84 0.59 1.75 16 16 C 0.24 6.37 5.18 -5.19 -0.03 6.35 16 17 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 18 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 21 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.14 1.73 7.27 -82.01 -0.60 1.13 16 26 C -0.08 -0.80 9.92 36.01 0.36 -0.45 16 27 N -0.30 -3.66 12.33 33.90 0.42 -3.25 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.41 8.06 -51.93 -0.42 -0.01 16 33 H 0.20 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.19 6.33 -51.93 -0.33 0.86 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 39 H 0.06 0.80 4.92 -51.93 -0.26 0.55 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.05 1.35 7.36 -51.92 -0.38 0.97 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 1.07 6.55 -51.93 -0.34 0.73 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -35.74 383.60 -6.53 -42.27 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.66 Total: -1.44 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -0.11 Total: 11.13 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.41 Total: -45.96 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.93 Total: -28.33 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.74 -6.53 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860203922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.213 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds