Wall clock time and date at job start Tue Mar 31 2020 14:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46997 * 2 1 4 4 C 1.34217 * 125.74308 * 125.29205 * 3 2 1 5 5 C 1.38122 * 107.40904 * 180.15940 * 4 3 2 6 6 C 1.47284 * 126.42983 * 179.83761 * 5 4 3 7 7 O 1.21522 * 120.00295 * 179.69052 * 6 5 4 8 8 O 1.34757 * 120.00208 * 359.68555 * 6 5 4 9 9 C 1.45204 * 117.00268 * 180.02562 * 8 6 5 10 10 H 1.08992 * 109.46991 * 30.00314 * 9 8 6 11 11 C 1.52998 * 109.46952 * 270.00132 * 9 8 6 12 12 C 1.50701 * 109.46886 * 150.00232 * 9 8 6 13 13 O 1.21281 * 120.00127 * 16.02194 * 12 9 8 14 14 N 1.34778 * 119.99638 * 196.02970 * 12 9 8 15 15 C 1.46494 * 120.00128 * 5.36492 * 14 12 9 16 16 C 1.46499 * 119.99700 * 185.36122 * 14 12 9 17 17 C 1.50702 * 109.46860 * 89.99917 * 16 14 12 18 18 H 1.07999 * 120.00293 * 0.02562 * 17 16 14 19 19 C 1.37886 * 120.00009 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99573 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99940 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47239 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46705 * 120.00367 * 21 19 17 24 24 H 1.48502 * 109.47091 * 240.00102 * 21 19 17 25 25 C 1.41339 * 107.14422 * 359.57102 * 5 4 3 26 26 C 1.50701 * 125.99574 * 180.28089 * 25 5 4 27 27 N 1.30434 * 108.01539 * 0.26502 * 25 5 4 28 28 H 1.09002 * 109.46967 * 300.00128 * 1 2 3 29 29 H 1.08996 * 109.47284 * 59.99959 * 1 2 3 30 30 H 1.09004 * 109.47069 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46967 * 239.99872 * 2 1 3 32 32 H 1.09005 * 109.47171 * 119.99824 * 2 1 3 33 33 H 1.08000 * 126.29872 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.47393 * 66.13987 * 11 9 8 35 35 H 1.08997 * 109.47092 * 306.13550 * 11 9 8 36 36 H 1.09000 * 109.46733 * 186.13756 * 11 9 8 37 37 H 1.08998 * 109.47479 * 84.82343 * 15 14 12 38 38 H 1.09002 * 109.47016 * 204.82429 * 15 14 12 39 39 H 1.09000 * 109.46810 * 324.81906 * 15 14 12 40 40 H 1.09003 * 109.47348 * 209.99678 * 16 14 12 41 41 H 1.09008 * 109.47508 * 330.00271 * 16 14 12 42 42 H 0.96998 * 119.99687 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.47127 * 90.00392 * 26 25 5 44 44 H 1.08998 * 109.47538 * 210.00201 * 26 25 5 45 45 H 1.08998 * 109.47257 * 330.00735 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9107 0.8892 5 6 3.0705 3.2315 0.5367 6 6 3.9308 4.2033 1.2330 7 8 4.0235 5.3410 0.8159 8 8 4.6150 3.8310 2.3326 9 6 5.4426 4.8411 2.9676 10 1 5.0038 5.8254 2.8043 11 6 6.8478 4.8025 2.3638 12 6 5.5238 4.5665 4.4471 13 8 5.2000 3.4813 4.8811 14 7 5.9561 5.5270 5.2880 15 6 6.2350 6.8729 4.7813 16 6 6.1471 5.2250 6.7087 17 6 7.5575 4.7445 6.9349 18 1 8.2431 4.6717 6.1036 19 6 7.9729 4.3986 8.2034 20 7 7.1381 4.4877 9.2157 21 14 9.7208 3.8023 8.4836 22 1 10.4535 3.7923 7.1920 23 1 10.4077 4.7125 9.4348 24 1 9.6909 2.4286 9.0469 25 6 2.2971 3.4738 -0.6213 26 6 2.2054 4.7797 -1.3678 27 7 1.6769 2.3688 -0.9307 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3214 1.3990 1.7280 34 1 6.8026 5.1075 1.3182 35 1 7.2439 3.7892 2.4299 36 1 7.4981 5.4834 2.9130 37 1 5.3113 7.4512 4.7583 38 1 6.9555 7.3650 5.4346 39 1 6.6458 6.8040 3.7740 40 1 5.9709 6.1247 7.2984 41 1 5.4455 4.4481 7.0126 42 1 7.4302 4.2440 10.1080 43 1 2.9771 4.8135 -2.1369 44 1 1.2238 4.8635 -1.8342 45 1 2.3490 5.6066 -0.6724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860203922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:59 Heat of formation + Delta-G solvation = -66.564753 kcal Electronic energy + Delta-G solvation = -27380.379909 eV Core-core repulsion = 23399.265851 eV Total energy + Delta-G solvation = -3981.114058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.60087 -41.53984 -40.30448 -37.52448 -36.65286 -35.78381 -34.84039 -33.18245 -32.41823 -31.21315 -29.67990 -28.80799 -27.55466 -26.15858 -25.30488 -24.16187 -23.21959 -21.89770 -20.66329 -20.25627 -19.03182 -18.67882 -18.18158 -17.72330 -17.24997 -17.17560 -16.61430 -16.53248 -16.13421 -15.94488 -15.31967 -15.08140 -14.72282 -14.70991 -14.25788 -14.08025 -14.04238 -13.85263 -13.61267 -13.52781 -13.30720 -13.22866 -13.12021 -13.07296 -12.88818 -12.79976 -12.62372 -12.49598 -12.40447 -12.19828 -11.93686 -11.85213 -11.67462 -11.44933 -10.64176 -10.59574 -10.46091 -9.86863 -9.50094 -8.22018 -6.36693 0.25283 0.91960 1.15244 1.38991 1.40865 1.48354 1.52564 1.63569 2.06933 2.36117 2.48676 3.08310 3.22213 3.43723 3.65790 3.75390 3.88964 3.90003 3.99500 4.04264 4.20660 4.31344 4.33255 4.40347 4.60647 4.63046 4.67975 4.75523 4.76635 4.77476 4.88960 4.92111 4.96420 4.99143 5.11245 5.20470 5.21774 5.30397 5.50101 5.54224 5.78253 5.80026 6.04485 6.43563 6.57775 6.72716 6.76153 7.21365 7.37329 8.85790 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.002727 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.703517 B =10264.792275 C =11165.605594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 N -0.351 5.351 4 C 0.143 3.857 5 C -0.311 4.311 6 C 0.543 3.457 7 O -0.528 6.528 8 O -0.342 6.342 9 C 0.084 3.916 10 H 0.120 0.880 11 C -0.158 4.158 12 C 0.503 3.497 13 O -0.577 6.577 14 N -0.601 5.601 15 C 0.067 3.933 16 C 0.258 3.742 17 C -0.542 4.542 18 H 0.059 0.941 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.283 1.283 25 C 0.129 3.871 26 C -0.076 4.076 27 N -0.315 5.315 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.212 0.788 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.029 0.971 41 H 0.001 0.999 42 H 0.267 0.733 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.016 -3.645 -21.913 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.005 4.005 3 N -0.128 5.128 4 C -0.011 4.011 5 C -0.324 4.324 6 C 0.390 3.610 7 O -0.419 6.419 8 O -0.257 6.257 9 C 0.025 3.975 10 H 0.138 0.862 11 C -0.215 4.215 12 C 0.290 3.710 13 O -0.457 6.457 14 N -0.333 5.333 15 C -0.075 4.075 16 C 0.137 3.863 17 C -0.580 4.580 18 H 0.077 0.923 19 C -0.192 4.192 20 N -0.569 5.569 21 Si 0.793 3.207 22 H -0.188 1.188 23 H -0.196 1.196 24 H -0.208 1.208 25 C -0.038 4.038 26 C -0.134 4.134 27 N -0.137 5.137 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.147 0.853 33 H 0.229 0.771 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.047 0.953 41 H 0.019 0.981 42 H 0.076 0.924 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.038 -4.613 -22.416 24.990 hybrid contribution 1.280 0.101 1.445 1.933 sum -8.759 -4.512 -20.971 23.170 Atomic orbital electron populations 1.22030 0.93018 1.04434 1.02409 1.22351 0.96808 0.74743 1.06641 1.48969 1.32846 1.11586 1.19365 1.23707 0.90118 0.93106 0.94165 1.19395 1.13405 0.94794 1.04823 1.20304 0.76635 0.86393 0.77660 1.90743 1.64082 1.21070 1.65978 1.86658 1.56267 1.42459 1.40363 1.22498 0.93707 0.92821 0.88443 0.86228 1.22157 0.92359 1.04255 1.02721 1.20610 0.77694 0.84350 0.88338 1.90637 1.50337 1.25721 1.78962 1.48059 1.64058 1.11573 1.09629 1.22150 1.02342 0.81867 1.01147 1.18876 0.95763 0.95607 0.76048 1.21729 0.97480 1.44837 0.93987 0.92317 1.25872 1.02325 0.95385 0.95576 1.70063 1.37208 1.49118 1.00469 0.85343 0.78943 0.77887 0.78497 1.18808 1.19589 1.20848 1.22798 0.92102 0.96088 0.92819 1.20400 1.04027 0.89262 0.99751 1.77112 1.25066 0.96938 1.14559 0.93058 0.92478 0.87780 0.87571 0.85279 0.77112 0.88871 0.91703 0.88627 0.91000 0.90117 0.89041 0.95269 0.98111 0.92386 0.89022 0.89352 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 10.09 71.98 0.73 -0.88 16 2 C 0.11 1.14 7.21 86.38 0.62 1.76 16 3 N -0.35 -6.67 3.65 -346.25 -1.26 -7.94 16 4 C 0.14 3.07 11.29 84.30 0.95 4.02 16 5 C -0.31 -8.25 6.13 -20.16 -0.12 -8.37 16 6 C 0.54 16.54 7.93 70.20 0.56 17.10 16 7 O -0.53 -16.59 14.18 19.76 0.28 -16.31 16 8 O -0.34 -11.55 9.30 -50.44 -0.47 -12.02 16 9 C 0.08 2.76 2.14 29.85 0.06 2.82 16 10 H 0.12 3.53 6.31 -2.39 -0.02 3.52 16 11 C -0.16 -4.28 9.19 71.98 0.66 -3.62 16 12 C 0.50 21.86 6.95 87.66 0.61 22.46 16 13 O -0.58 -30.71 16.13 15.23 0.25 -30.46 16 14 N -0.60 -25.76 2.86 -851.13 -2.43 -28.20 16 15 C 0.07 2.01 9.79 127.77 1.25 3.26 16 16 C 0.26 13.86 5.18 85.63 0.44 14.30 16 17 C -0.54 -30.65 9.39 25.60 0.24 -30.41 16 18 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 19 C 0.01 0.42 5.46 84.66 0.46 0.88 16 20 N -0.93 -55.66 13.29 21.45 0.28 -55.38 16 21 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 C 0.13 3.16 7.27 43.53 0.32 3.48 16 26 C -0.08 -1.49 9.92 71.24 0.71 -0.78 16 27 N -0.31 -7.35 12.33 -46.65 -0.58 -7.93 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.13 0.66 8.06 -2.38 -0.02 0.64 16 33 H 0.21 3.66 8.06 -2.91 -0.02 3.63 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.10 2.39 6.33 -2.39 -0.02 2.37 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 2.44 8.03 -2.39 -0.02 2.42 16 39 H 0.09 2.18 4.92 -2.39 -0.01 2.17 16 40 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 41 H 0.00 0.05 7.36 -2.38 -0.02 0.03 16 42 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.08 1.85 6.55 -2.39 -0.02 1.83 16 Total: -1.00 -79.61 383.60 6.58 -73.03 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 1.00 Total: 13.03 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: 7.49 Total: 26.04 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -3.98 Total: -99.44 kcal Atomic # 8 Polarization: -58.85 SS G_CDS: 0.06 Total: -58.79 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -79.61 6.58 -73.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860203922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.463 kcal (2) G-P(sol) polarization free energy of solvation -79.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds