Wall clock time and date at job start Tue Mar 31 2020 14:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46509 * 109.46709 * 2 1 4 4 C 1.46504 * 119.99546 * 269.99924 * 3 2 1 5 5 C 1.50701 * 109.46669 * 269.99855 * 4 3 2 6 6 H 1.07999 * 120.00592 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99640 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99921 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46867 * 90.00492 * 9 7 5 11 11 H 1.48501 * 109.46916 * 209.99831 * 9 7 5 12 12 H 1.48493 * 109.47148 * 330.00041 * 9 7 5 13 13 C 1.34777 * 119.99956 * 89.99913 * 3 2 1 14 14 O 1.21279 * 119.99689 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00339 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47402 * 180.02562 * 15 13 3 17 17 C 1.34754 * 117.00246 * 180.02562 * 16 15 13 18 18 O 1.21530 * 119.99780 * 0.27084 * 17 16 15 19 19 C 1.47286 * 119.99971 * 180.02562 * 17 16 15 20 20 C 1.38117 * 126.42854 * 359.69013 * 19 17 16 21 21 N 1.34221 * 107.41058 * 179.83495 * 20 19 17 22 22 C 1.46500 * 125.74423 * 180.11544 * 21 20 19 23 23 C 1.53005 * 109.46604 * 125.33627 * 22 21 20 24 24 N 1.39928 * 108.50997 * 0.42729 * 21 20 19 25 25 C 1.30425 * 108.92370 * 359.72805 * 24 21 20 26 26 C 1.50701 * 125.99921 * 179.97438 * 25 24 21 27 27 H 1.08996 * 109.47541 * 300.00076 * 1 2 3 28 28 H 1.09002 * 109.47176 * 60.00597 * 1 2 3 29 29 H 1.09003 * 109.46554 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47541 * 239.99924 * 2 1 3 31 31 H 1.09002 * 109.47176 * 119.99403 * 2 1 3 32 32 H 1.08994 * 109.47187 * 29.99915 * 4 3 2 33 33 H 1.09004 * 109.46755 * 150.00461 * 4 3 2 34 34 H 0.97000 * 119.99686 * 179.97438 * 8 7 5 35 35 H 1.09011 * 109.46895 * 60.00082 * 15 13 3 36 36 H 1.09003 * 109.47604 * 300.00631 * 15 13 3 37 37 H 1.08009 * 126.29625 * 359.97438 * 20 19 17 38 38 H 1.09004 * 109.47543 * 245.33165 * 22 21 20 39 39 H 1.08996 * 109.47209 * 5.34228 * 22 21 20 40 40 H 1.08997 * 109.47568 * 60.00530 * 23 22 21 41 41 H 1.09000 * 109.46871 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.47216 * 299.99817 * 23 22 21 43 43 H 1.08994 * 109.46952 * 270.02673 * 26 25 24 44 44 H 1.08999 * 109.46467 * 30.02908 * 26 25 24 45 45 H 1.09000 * 109.46837 * 150.02603 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1494 2.3905 -2.8775 8 7 3.3493 3.1265 -3.6177 9 14 5.9138 2.0976 -3.4163 10 1 5.9777 0.8769 -4.2595 11 1 6.3927 3.2653 -4.1988 12 1 6.7736 1.9179 -2.2190 13 6 2.2428 2.0167 1.1672 14 8 2.6466 3.1603 1.1671 15 6 1.9912 1.3066 2.4723 16 8 2.3052 2.1963 3.5759 17 6 2.1335 1.7108 4.8211 18 8 1.7370 0.5731 4.9804 19 6 2.4315 2.5571 5.9891 20 6 2.8964 3.8574 5.9626 21 7 3.0320 4.2615 7.2353 22 6 3.4980 5.5809 7.6692 23 6 2.4641 6.2027 8.6103 24 7 2.6602 3.2081 8.0779 25 6 2.3011 2.1889 7.3476 26 6 1.8303 0.8528 7.8618 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0954 3.1411 -1.1385 34 1 3.6756 3.5175 -4.4433 35 1 2.6212 0.4188 2.5302 36 1 0.9431 1.0126 2.5299 37 1 3.1093 4.4424 5.0799 38 1 4.4488 5.4767 8.1920 39 1 3.6303 6.2238 6.7991 40 1 2.3318 5.5599 9.4805 41 1 2.8106 7.1846 8.9328 42 1 1.5134 6.3070 8.0875 43 1 2.6861 0.1894 7.9862 44 1 1.3327 0.9881 8.8221 45 1 1.1316 0.4149 7.1489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860205939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:50 Heat of formation + Delta-G solvation = -48.025507 kcal Electronic energy + Delta-G solvation = -27063.404719 eV Core-core repulsion = 23083.094583 eV Total energy + Delta-G solvation = -3980.310136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69019 -40.05784 -38.80762 -36.24342 -35.28733 -35.06255 -32.84537 -31.80057 -30.67437 -30.15017 -28.98040 -28.00103 -26.50196 -24.25137 -23.08767 -22.88274 -22.30868 -20.94602 -19.70265 -18.62514 -17.82613 -17.05341 -16.63629 -16.36073 -16.30406 -15.80735 -15.75231 -15.16182 -14.68662 -14.42704 -14.32001 -14.10807 -13.54819 -13.42491 -13.19557 -13.17646 -12.84599 -12.67508 -12.54943 -12.36687 -12.14778 -12.08919 -12.04345 -11.79958 -11.60707 -11.23028 -11.07899 -10.93606 -10.84784 -10.59003 -10.46411 -10.35887 -10.14996 -9.66282 -9.60888 -8.97711 -8.95696 -8.45467 -7.74486 -6.06500 -4.11202 1.21127 1.86904 1.98449 2.65125 3.12917 3.27906 3.29628 3.36172 3.41424 3.90948 4.02787 4.43299 4.47135 4.49876 4.55153 4.75891 4.87624 4.91643 5.07347 5.17037 5.26154 5.27882 5.28276 5.31358 5.34392 5.42257 5.51919 5.60952 5.63902 5.74411 5.75714 5.78100 6.02299 6.20784 6.25056 6.46420 6.52145 6.53900 7.00821 7.32949 7.39590 7.48056 7.88087 7.91607 8.20142 8.31109 8.84954 8.99972 9.53821 11.01656 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.002759 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.140611 B =10147.833684 C =11293.562078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.053 3.947 16 O -0.330 6.330 17 C 0.543 3.457 18 O -0.517 6.517 19 C -0.281 4.281 20 C 0.136 3.864 21 N -0.358 5.358 22 C 0.124 3.876 23 C -0.166 4.166 24 N -0.301 5.301 25 C 0.137 3.863 26 C -0.079 4.079 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.196 0.804 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 -0.356 21.703 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.398 6.398 15 C -0.025 4.025 16 O -0.245 6.245 17 C 0.388 3.612 18 O -0.408 6.408 19 C -0.294 4.294 20 C -0.016 4.016 21 N -0.136 5.136 22 C 0.004 3.996 23 C -0.223 4.223 24 N -0.122 5.122 25 C -0.030 4.030 26 C -0.137 4.137 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.213 0.787 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.770 0.654 22.768 23.087 hybrid contribution 0.895 -0.512 -1.409 1.746 sum -2.875 0.143 21.358 21.551 Atomic orbital electron populations 1.22232 0.96535 1.01698 1.02406 1.21513 0.93758 0.83935 1.03049 1.48209 1.63827 1.13423 1.07142 1.19324 0.96441 0.93699 0.77619 1.21435 0.96874 1.31985 1.06340 0.92387 1.24933 0.97903 0.94871 0.96367 1.69931 1.35713 1.33369 1.14339 0.86487 0.84616 0.77677 0.78600 1.20627 1.21091 1.19866 1.19732 0.79577 0.87120 0.84330 1.90695 1.44676 1.17571 1.86813 1.22920 1.02700 0.92634 0.84214 1.86588 1.79087 1.44767 1.14097 1.20012 0.73906 0.84973 0.82266 1.90784 1.44312 1.19076 1.86580 1.19292 1.22506 0.95740 0.91884 1.23473 0.93787 0.95095 0.89228 1.48579 1.49002 1.12053 1.03950 1.21899 0.98640 0.78221 1.00849 1.22057 0.98920 1.01264 1.00098 1.77142 1.22857 0.95174 1.17078 1.22474 0.95096 0.95881 0.89572 1.20372 1.02297 0.89218 1.01823 0.93076 0.91845 0.91897 0.89464 0.91660 0.94651 0.93726 0.92687 0.88686 0.88772 0.78687 0.89141 0.87824 0.90973 0.90364 0.91846 0.90021 0.90848 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.10 1.60 5.93 -4.04 -0.02 1.57 16 3 N -0.59 -12.36 2.46 -175.05 -0.43 -12.79 16 4 C 0.25 6.36 5.16 -5.19 -0.03 6.34 16 5 C -0.53 -14.77 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 9 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.51 10.68 7.75 -10.99 -0.09 10.59 16 14 O -0.52 -13.22 16.08 -14.10 -0.23 -13.45 16 15 C 0.05 0.87 4.51 36.00 0.16 1.03 16 16 O -0.33 -5.60 9.58 -47.32 -0.45 -6.06 16 17 C 0.54 8.37 7.95 34.41 0.27 8.64 16 18 O -0.52 -8.36 14.71 -19.29 -0.28 -8.65 16 19 C -0.28 -3.80 6.13 -105.08 -0.64 -4.44 16 20 C 0.14 1.54 11.28 -16.55 -0.19 1.35 16 21 N -0.36 -3.68 3.65 -60.79 -0.22 -3.90 16 22 C 0.12 0.77 7.21 -4.04 -0.03 0.74 16 23 C -0.17 -0.94 10.09 37.16 0.37 -0.56 16 24 N -0.30 -3.67 12.33 33.90 0.42 -3.25 16 25 C 0.14 1.73 7.27 -82.01 -0.60 1.13 16 26 C -0.08 -0.80 9.92 36.01 0.36 -0.44 16 27 H 0.05 0.65 7.22 -51.93 -0.37 0.28 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.10 1.42 7.39 -51.92 -0.38 1.04 16 36 H 0.09 1.35 7.18 -51.93 -0.37 0.98 16 37 H 0.20 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.42 8.06 -51.93 -0.42 0.00 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.05 6.56 -51.93 -0.34 0.71 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -35.65 386.97 -6.91 -42.56 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.80 Total: -2.03 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -0.46 Total: 10.61 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.50 Total: -45.50 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.96 Total: -28.15 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.65 -6.91 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860205939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.465 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds