Wall clock time and date at job start Tue Mar 31 2020 14:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46509 * 109.46709 * 2 1 4 4 C 1.46504 * 119.99546 * 269.99924 * 3 2 1 5 5 C 1.50701 * 109.46669 * 269.99855 * 4 3 2 6 6 H 1.07999 * 120.00592 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99640 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99921 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46867 * 90.00492 * 9 7 5 11 11 H 1.48501 * 109.46916 * 209.99831 * 9 7 5 12 12 H 1.48493 * 109.47148 * 330.00041 * 9 7 5 13 13 C 1.34777 * 119.99956 * 89.99913 * 3 2 1 14 14 O 1.21279 * 119.99689 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00339 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47402 * 180.02562 * 15 13 3 17 17 C 1.34754 * 117.00246 * 180.02562 * 16 15 13 18 18 O 1.21530 * 119.99780 * 0.27084 * 17 16 15 19 19 C 1.47286 * 119.99971 * 180.02562 * 17 16 15 20 20 C 1.38117 * 126.42854 * 359.69013 * 19 17 16 21 21 N 1.34221 * 107.41058 * 179.83495 * 20 19 17 22 22 C 1.46500 * 125.74423 * 180.11544 * 21 20 19 23 23 C 1.53005 * 109.46604 * 125.33627 * 22 21 20 24 24 N 1.39928 * 108.50997 * 0.42729 * 21 20 19 25 25 C 1.30425 * 108.92370 * 359.72805 * 24 21 20 26 26 C 1.50701 * 125.99921 * 179.97438 * 25 24 21 27 27 H 1.08996 * 109.47541 * 300.00076 * 1 2 3 28 28 H 1.09002 * 109.47176 * 60.00597 * 1 2 3 29 29 H 1.09003 * 109.46554 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47541 * 239.99924 * 2 1 3 31 31 H 1.09002 * 109.47176 * 119.99403 * 2 1 3 32 32 H 1.08994 * 109.47187 * 29.99915 * 4 3 2 33 33 H 1.09004 * 109.46755 * 150.00461 * 4 3 2 34 34 H 0.97000 * 119.99686 * 179.97438 * 8 7 5 35 35 H 1.09011 * 109.46895 * 60.00082 * 15 13 3 36 36 H 1.09003 * 109.47604 * 300.00631 * 15 13 3 37 37 H 1.08009 * 126.29625 * 359.97438 * 20 19 17 38 38 H 1.09004 * 109.47543 * 245.33165 * 22 21 20 39 39 H 1.08996 * 109.47209 * 5.34228 * 22 21 20 40 40 H 1.08997 * 109.47568 * 60.00530 * 23 22 21 41 41 H 1.09000 * 109.46871 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.47216 * 299.99817 * 23 22 21 43 43 H 1.08994 * 109.46952 * 270.02673 * 26 25 24 44 44 H 1.08999 * 109.46467 * 30.02908 * 26 25 24 45 45 H 1.09000 * 109.46837 * 150.02603 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1494 2.3905 -2.8775 8 7 3.3493 3.1265 -3.6177 9 14 5.9138 2.0976 -3.4163 10 1 5.9777 0.8769 -4.2595 11 1 6.3927 3.2653 -4.1988 12 1 6.7736 1.9179 -2.2190 13 6 2.2428 2.0167 1.1672 14 8 2.6466 3.1603 1.1671 15 6 1.9912 1.3066 2.4723 16 8 2.3052 2.1963 3.5759 17 6 2.1335 1.7108 4.8211 18 8 1.7370 0.5731 4.9804 19 6 2.4315 2.5571 5.9891 20 6 2.8964 3.8574 5.9626 21 7 3.0320 4.2615 7.2353 22 6 3.4980 5.5809 7.6692 23 6 2.4641 6.2027 8.6103 24 7 2.6602 3.2081 8.0779 25 6 2.3011 2.1889 7.3476 26 6 1.8303 0.8528 7.8618 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0954 3.1411 -1.1385 34 1 3.6756 3.5175 -4.4433 35 1 2.6212 0.4188 2.5302 36 1 0.9431 1.0126 2.5299 37 1 3.1093 4.4424 5.0799 38 1 4.4488 5.4767 8.1920 39 1 3.6303 6.2238 6.7991 40 1 2.3318 5.5599 9.4805 41 1 2.8106 7.1846 8.9328 42 1 1.5134 6.3070 8.0875 43 1 2.6861 0.1894 7.9862 44 1 1.3327 0.9881 8.8221 45 1 1.1316 0.4149 7.1489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860205939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:49 Heat of formation + Delta-G solvation = -69.615727 kcal Electronic energy + Delta-G solvation = -27064.340941 eV Core-core repulsion = 23083.094583 eV Total energy + Delta-G solvation = -3981.246358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.58895 -41.36043 -40.35055 -37.50331 -36.92365 -35.78304 -34.92198 -32.57350 -31.79774 -31.50661 -30.40024 -28.86580 -28.23535 -25.29592 -24.69706 -24.10283 -23.36360 -21.96034 -20.67328 -20.13975 -18.96415 -18.59606 -18.15961 -17.73825 -17.63977 -17.21982 -16.65624 -16.62705 -16.09477 -15.84711 -15.30876 -15.03246 -14.82967 -14.66975 -14.47377 -14.09728 -14.01966 -13.83662 -13.70926 -13.55726 -13.25970 -13.22559 -13.09850 -13.03033 -12.87051 -12.66996 -12.48898 -12.40248 -12.20137 -12.01507 -11.92016 -11.75033 -11.68540 -11.47256 -10.69253 -10.63018 -10.46126 -9.86827 -9.51914 -8.21996 -6.36244 0.25388 0.92266 1.14569 1.38077 1.40688 1.47775 1.52114 1.65225 2.07058 2.35633 2.50489 3.08135 3.22580 3.47487 3.66263 3.84987 3.90252 4.03172 4.04321 4.08654 4.19259 4.24106 4.34080 4.40830 4.41704 4.61818 4.75863 4.76731 4.77650 4.90419 4.93264 4.97046 4.98896 5.05243 5.20161 5.21308 5.27371 5.38480 5.49923 5.56359 5.78334 5.81707 6.05832 6.43701 6.60437 6.73112 6.75908 7.23437 7.38570 8.85405 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.002759 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.140611 B =10147.833684 C =11293.562078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.501 3.499 14 O -0.576 6.576 15 C 0.065 3.935 16 O -0.346 6.346 17 C 0.545 3.455 18 O -0.529 6.529 19 C -0.311 4.311 20 C 0.143 3.857 21 N -0.351 5.351 22 C 0.112 3.888 23 C -0.160 4.160 24 N -0.315 5.315 25 C 0.130 3.870 26 C -0.076 4.076 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.029 0.971 33 H 0.001 0.999 34 H 0.267 0.733 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.212 0.788 38 H 0.104 0.896 39 H 0.129 0.871 40 H 0.056 0.944 41 H 0.103 0.897 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.411 -1.249 22.965 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.288 3.712 14 O -0.456 6.456 15 C -0.012 4.012 16 O -0.262 6.262 17 C 0.392 3.608 18 O -0.420 6.420 19 C -0.324 4.324 20 C -0.011 4.011 21 N -0.128 5.128 22 C -0.006 4.006 23 C -0.218 4.218 24 N -0.137 5.137 25 C -0.038 4.038 26 C -0.134 4.134 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.047 0.953 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.229 0.771 38 H 0.122 0.878 39 H 0.147 0.853 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.127 -0.279 24.063 24.267 hybrid contribution 0.666 -0.163 -1.746 1.876 sum -2.461 -0.442 22.317 22.457 Atomic orbital electron populations 1.22175 0.94356 1.03762 1.01829 1.21864 0.95539 0.81024 1.04387 1.48205 1.63648 1.15246 1.05700 1.18789 0.95537 0.91715 0.79765 1.21704 0.97825 1.32092 1.06611 0.92779 1.25835 1.02332 0.94438 0.96405 1.70047 1.37750 1.34119 1.14802 0.85419 0.79056 0.78164 0.78200 1.18886 1.20652 1.19785 1.20514 0.78263 0.86645 0.85757 1.90658 1.47134 1.20058 1.87755 1.22788 1.04649 0.92018 0.81741 1.86582 1.79554 1.45337 1.14740 1.20250 0.73512 0.85111 0.81938 1.90764 1.45127 1.19547 1.86543 1.19389 1.24704 0.96746 0.91590 1.23717 0.92640 0.94591 0.90121 1.48968 1.47644 1.12727 1.03451 1.22350 0.99186 0.76761 1.02308 1.22023 0.98409 1.02192 0.99157 1.77106 1.23285 0.95622 1.17676 1.22802 0.94992 0.96711 0.89281 1.20402 1.02451 0.88349 1.02230 0.92393 0.93716 0.88439 0.90042 0.88392 0.95310 0.98113 0.92372 0.86601 0.86146 0.77139 0.87783 0.85290 0.92484 0.87836 0.92853 0.89245 0.89247 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 10.24 71.98 0.74 -3.26 16 2 C 0.09 2.81 5.93 86.38 0.51 3.32 16 3 N -0.60 -25.05 2.46 -826.13 -2.03 -27.08 16 4 C 0.26 14.01 5.16 85.63 0.44 14.45 16 5 C -0.54 -31.05 9.39 25.60 0.24 -30.81 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.51 5.46 84.66 0.46 0.98 16 8 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 9 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.50 21.23 7.75 87.65 0.68 21.91 16 14 O -0.58 -30.23 16.08 15.77 0.25 -29.97 16 15 C 0.06 2.04 4.51 71.23 0.32 2.37 16 16 O -0.35 -11.53 9.58 -50.26 -0.48 -12.02 16 17 C 0.55 16.38 7.95 70.20 0.56 16.93 16 18 O -0.53 -16.46 14.71 19.74 0.29 -16.17 16 19 C -0.31 -8.21 6.13 -20.16 -0.12 -8.33 16 20 C 0.14 3.09 11.28 84.30 0.95 4.04 16 21 N -0.35 -6.72 3.65 -346.25 -1.26 -7.99 16 22 C 0.11 1.16 7.21 86.38 0.62 1.78 16 23 C -0.16 -1.54 10.09 71.98 0.73 -0.82 16 24 N -0.32 -7.36 12.33 -46.65 -0.58 -7.94 16 25 C 0.13 3.15 7.27 43.53 0.32 3.47 16 26 C -0.08 -1.48 9.92 71.24 0.71 -0.77 16 27 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 31 H 0.10 2.31 6.44 -2.39 -0.02 2.29 16 32 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 33 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 34 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.12 3.19 7.39 -2.38 -0.02 3.17 16 36 H 0.12 3.17 7.18 -2.39 -0.02 3.15 16 37 H 0.21 3.73 8.06 -2.91 -0.02 3.71 16 38 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.13 0.70 8.06 -2.39 -0.02 0.68 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 41 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.09 1.83 6.56 -2.39 -0.02 1.82 16 Total: -1.00 -79.68 386.97 6.65 -73.03 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.99 Total: 11.58 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 7.15 Total: 25.27 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -3.58 Total: -98.30 kcal Atomic # 8 Polarization: -58.22 SS G_CDS: 0.06 Total: -58.16 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -79.68 6.65 -73.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860205939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.414 kcal (2) G-P(sol) polarization free energy of solvation -79.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds