Wall clock time and date at job start Tue Mar 31 2020 14:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.47117 * 2 1 4 4 C 1.35850 * 126.05743 * 125.30339 * 3 2 1 5 5 C 1.35742 * 107.55606 * 180.13805 * 4 3 2 6 6 N 1.40805 * 126.07322 * 179.84489 * 5 4 3 7 7 C 1.34778 * 119.99771 * 218.52700 * 6 5 4 8 8 S 1.71201 * 119.99862 * 355.17594 * 7 6 5 9 9 N 1.34772 * 119.99955 * 175.18178 * 7 6 5 10 10 C 1.47080 * 120.88414 * 174.82000 * 9 7 6 11 11 C 1.53239 * 108.52113 * 128.78938 * 10 9 7 12 12 N 1.46900 * 109.33499 * 53.83641 * 11 10 9 13 13 C 1.46901 * 110.99973 * 172.74172 * 12 11 10 14 14 C 1.50693 * 109.47007 * 64.48539 * 13 12 11 15 15 H 1.08002 * 120.00333 * 2.99308 * 14 13 12 16 16 C 1.37884 * 120.00215 * 183.00166 * 14 13 12 17 17 N 1.31509 * 119.99796 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99742 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46836 * 90.00318 * 18 16 14 20 20 H 1.48493 * 109.47074 * 210.00215 * 18 16 14 21 21 H 1.48500 * 109.46918 * 330.00194 * 18 16 14 22 22 C 1.46901 * 111.27271 * 296.89263 * 12 11 10 23 23 C 1.47083 * 120.88239 * 354.80383 * 9 7 6 24 24 C 1.40240 * 107.84666 * 359.58288 * 5 4 3 25 25 N 1.30832 * 108.34365 * 0.26100 * 24 5 4 26 26 H 1.09002 * 109.47019 * 60.00296 * 1 2 3 27 27 H 1.08996 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47383 * 300.00176 * 1 2 3 29 29 H 1.08999 * 109.46985 * 240.00162 * 2 1 3 30 30 H 1.09002 * 109.47019 * 119.99704 * 2 1 3 31 31 H 1.07996 * 126.22072 * 359.97438 * 4 3 2 32 32 H 0.96998 * 119.99839 * 38.51696 * 6 5 4 33 33 H 1.09002 * 109.62463 * 9.08904 * 10 9 7 34 34 H 1.08992 * 109.63409 * 248.50822 * 10 9 7 35 35 H 1.08998 * 109.48986 * 173.79009 * 11 10 9 36 36 H 1.08994 * 109.49876 * 293.87839 * 11 10 9 37 37 H 1.09001 * 109.47071 * 184.48037 * 13 12 11 38 38 H 1.09000 * 109.47463 * 304.47965 * 13 12 11 39 39 H 0.97008 * 119.99602 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.48976 * 303.14874 * 22 12 11 41 41 H 1.09000 * 109.49532 * 183.06078 * 22 12 11 42 42 H 1.08994 * 109.62506 * 350.91477 * 23 9 7 43 43 H 1.09001 * 109.62923 * 111.49543 * 23 9 7 44 44 H 1.08004 * 125.82606 * 180.27515 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8833 1.9236 0.8963 5 6 3.0753 3.2210 0.5466 6 7 3.8992 4.1467 1.2150 7 6 3.5035 5.4283 1.3475 8 16 2.0592 5.9600 0.5977 9 7 4.2449 6.2911 2.0702 10 6 3.8936 7.7179 2.1350 11 6 3.8416 8.1400 3.6071 12 7 5.1074 7.7818 4.2608 13 6 5.1663 8.3218 5.6257 14 6 4.0952 7.6775 6.4674 15 1 3.4680 6.9060 6.0457 16 6 3.9155 8.0732 7.7760 17 7 2.9803 7.5113 8.5103 18 14 5.0004 9.4074 8.5056 19 1 4.3733 10.7342 8.2791 20 1 5.1563 9.1760 9.9641 21 1 6.3342 9.3724 7.8536 22 6 5.3144 6.3274 4.2607 23 6 5.4266 5.8310 2.8153 24 6 2.3119 3.4740 -0.6023 25 7 1.6812 2.3749 -0.9278 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.3339 1.4156 1.7360 32 1 4.7515 3.8620 1.5803 33 1 2.9185 7.8761 1.6741 34 1 4.6484 8.3050 1.6121 35 1 3.6913 9.2177 3.6714 36 1 3.0179 7.6273 4.1038 37 1 6.1443 8.1104 6.0582 38 1 5.0069 9.3997 5.5973 39 1 2.8542 7.7895 9.4311 40 1 4.4701 5.8399 4.7482 41 1 6.2322 6.0905 4.7989 42 1 5.4651 4.7418 2.8042 43 1 6.3289 6.2368 2.3577 44 1 2.2546 4.4153 -1.1287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865268977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:16 Heat of formation + Delta-G solvation = 124.544196 kcal Electronic energy + Delta-G solvation = -24978.297091 eV Core-core repulsion = 21480.515761 eV Total energy + Delta-G solvation = -3497.781330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.38064 -39.79863 -37.32263 -35.15292 -34.00019 -32.44634 -31.15694 -30.47788 -29.48704 -28.07531 -26.03316 -24.25708 -23.81415 -23.24600 -21.65061 -21.35962 -20.51120 -19.51902 -18.26444 -17.88188 -16.98375 -16.49546 -15.73257 -15.51016 -15.02221 -14.75854 -14.64606 -14.55755 -14.32605 -14.22406 -14.08935 -13.38545 -12.96204 -12.80585 -12.55820 -12.52978 -12.35691 -12.20395 -11.70185 -11.55749 -11.42451 -11.26923 -11.05587 -10.77215 -10.72080 -10.55722 -10.41259 -10.17206 -9.68247 -9.57139 -9.47945 -8.71051 -8.12208 -7.62169 -7.44292 -6.99280 -6.21550 -4.23649 1.29869 1.78261 1.99849 2.26047 2.72357 2.93300 3.19495 3.25228 3.27875 3.29329 4.28556 4.28850 4.51083 4.58325 4.67208 4.83741 4.86207 5.01428 5.07377 5.16588 5.17473 5.27803 5.35730 5.37963 5.50998 5.60741 5.66012 5.74503 5.86512 5.96250 6.07858 6.24337 6.36833 6.41885 6.59251 6.63889 6.73905 6.81204 6.89635 6.96486 7.23987 7.37487 7.66234 7.78027 7.79288 8.29898 8.78933 9.39812 10.91088 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.018908 B = 0.002855 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.515964 B = 9805.319656 C =10437.925851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.137 3.863 3 N -0.376 5.376 4 C 0.045 3.955 5 C -0.011 4.011 6 N -0.609 5.609 7 C 0.569 3.431 8 S -0.648 6.648 9 N -0.554 5.554 10 C 0.106 3.894 11 C 0.048 3.952 12 N -0.534 5.534 13 C 0.156 3.844 14 C -0.558 4.558 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.880 3.120 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.264 1.264 22 C 0.050 3.950 23 C 0.096 3.904 24 C 0.100 3.900 25 N -0.293 5.293 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.175 0.825 32 H 0.403 0.597 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.030 0.970 38 H 0.029 0.971 39 H 0.265 0.735 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -13.198 -15.375 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.016 3.984 3 N -0.159 5.159 4 C -0.104 4.104 5 C -0.115 4.115 6 N -0.237 5.237 7 C 0.210 3.790 8 S -0.517 6.517 9 N -0.261 5.261 10 C -0.016 4.016 11 C -0.081 4.081 12 N -0.258 5.258 13 C 0.030 3.970 14 C -0.597 4.597 15 H 0.091 0.909 16 C -0.129 4.129 17 N -0.532 5.532 18 Si 0.707 3.293 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.080 4.080 23 C -0.029 4.029 24 C -0.090 4.090 25 N -0.114 5.114 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.192 0.808 32 H 0.243 0.757 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.336 -13.300 -16.705 21.612 hybrid contribution 1.598 0.206 2.585 3.046 sum 4.934 -13.094 -14.121 19.879 Atomic orbital electron populations 1.22064 0.93684 1.02726 1.03979 1.21632 0.96167 0.77070 1.03485 1.48538 1.35025 1.10280 1.22058 1.22075 0.96928 0.94547 0.96808 1.17284 1.06452 0.89138 0.98664 1.41541 1.20804 1.05921 1.55477 1.22204 0.90567 0.82615 0.83648 1.93195 1.14726 1.82332 1.61482 1.47441 1.25991 1.09693 1.42943 1.22573 1.04610 0.75719 0.98701 1.22313 0.92736 1.01589 0.91489 1.62471 1.32394 1.09873 1.21044 1.20188 0.97164 0.95485 0.84191 1.21636 1.18040 1.23036 0.96969 0.90862 1.24978 0.94811 0.96141 0.97004 1.69927 1.32185 1.42348 1.08763 0.86785 0.81628 0.82459 0.78455 1.20048 1.21250 1.18860 1.22227 1.02698 0.90842 0.92219 1.22287 0.87792 0.98573 0.94270 1.24600 0.93379 0.97096 0.93947 1.77441 1.24227 0.96267 1.13509 0.90914 0.90792 0.91882 0.89886 0.88858 0.80824 0.75746 0.85734 0.90256 0.89545 0.92793 0.95151 0.95313 0.92524 0.92850 0.89671 0.90797 0.89463 0.77719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.10 37.16 0.38 -0.81 16 2 C 0.14 0.93 7.24 -4.04 -0.03 0.90 16 3 N -0.38 -4.01 3.70 -61.02 -0.23 -4.24 16 4 C 0.05 0.46 11.52 -16.67 -0.19 0.27 16 5 C -0.01 -0.13 6.40 -83.87 -0.54 -0.67 16 6 N -0.61 -7.16 5.34 -11.57 -0.06 -7.23 16 7 C 0.57 8.38 7.68 -86.92 -0.67 7.72 16 8 S -0.65 -11.77 24.20 -107.50 -2.60 -14.37 16 9 N -0.55 -7.73 3.01 -174.48 -0.53 -8.26 16 10 C 0.11 1.58 6.51 -3.60 -0.02 1.56 16 11 C 0.05 0.85 5.24 -3.70 -0.02 0.83 16 12 N -0.53 -9.75 4.83 -235.77 -1.14 -10.89 16 13 C 0.16 3.43 4.17 -4.98 -0.02 3.41 16 14 C -0.56 -14.69 8.32 -34.44 -0.29 -14.98 16 15 H 0.07 2.13 6.11 -52.49 -0.32 1.81 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 18 Si 0.88 20.48 27.41 -169.99 -4.66 15.82 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.26 -5.84 6.63 56.52 0.37 -5.47 16 22 C 0.05 0.80 5.16 -3.70 -0.02 0.78 16 23 C 0.10 1.14 6.49 -3.60 -0.02 1.11 16 24 C 0.10 1.41 10.03 -17.23 -0.17 1.23 16 25 N -0.29 -4.02 12.41 30.70 0.38 -3.64 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.39 8.07 -51.93 -0.42 -0.03 16 31 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.40 3.50 6.47 -40.82 -0.26 3.23 16 33 H 0.12 2.00 5.99 -50.64 -0.30 1.70 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.48 8.06 -51.93 -0.42 1.07 16 36 H 0.05 1.15 7.05 -51.93 -0.37 0.78 16 37 H 0.03 0.67 7.41 -51.93 -0.38 0.29 16 38 H 0.03 0.64 7.34 -51.93 -0.38 0.26 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.05 1.04 6.67 -51.93 -0.35 0.69 16 41 H 0.08 1.30 8.11 -51.93 -0.42 0.87 16 42 H 0.07 0.66 5.84 -51.93 -0.30 0.36 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.21 3.10 6.24 -48.49 -0.30 2.79 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -33.83 358.59 -10.72 -44.55 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.35 Total: 5.30 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.71 Total: 3.30 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.80 Total: -60.00 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.66 Total: 15.82 kcal Atomic # 16 Polarization: -11.77 SS G_CDS: -2.60 Total: -14.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.83 -10.72 -44.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865268977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.093 kcal (2) G-P(sol) polarization free energy of solvation -33.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds