Wall clock time and date at job start Tue Mar 31 2020 14:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47164 * 2 1 4 4 N 1.39928 * 125.74502 * 270.00056 * 3 2 1 5 5 C 1.30430 * 108.91972 * 179.73659 * 4 3 2 6 6 C 1.41353 * 108.01090 * 0.40925 * 5 4 3 7 7 C 1.47288 * 126.42404 * 179.85858 * 6 5 4 8 8 O 1.21522 * 119.99653 * 179.68774 * 7 6 5 9 9 O 1.34761 * 120.00075 * 359.67880 * 7 6 5 10 10 C 1.45194 * 116.99749 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47239 * 330.00132 * 10 9 7 12 12 C 1.52997 * 109.47339 * 90.00374 * 10 9 7 13 13 C 1.50699 * 109.46963 * 210.00356 * 10 9 7 14 14 O 1.21283 * 120.00399 * 355.00126 * 13 10 9 15 15 N 1.34783 * 120.00151 * 174.99824 * 13 10 9 16 16 C 1.46496 * 119.99587 * 0.02562 * 15 13 10 17 17 C 1.46500 * 120.00081 * 179.97438 * 15 13 10 18 18 C 1.50694 * 109.46954 * 89.99973 * 17 15 13 19 19 H 1.08003 * 120.00102 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99994 * 179.97438 * 18 17 15 21 21 N 1.31509 * 120.00205 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00154 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46987 * 90.00313 * 22 20 18 24 24 H 1.48498 * 109.47209 * 210.00317 * 22 20 18 25 25 H 1.48500 * 109.47126 * 330.00657 * 22 20 18 26 26 C 1.34230 * 125.74047 * 90.00155 * 3 2 1 27 27 C 1.50699 * 126.29550 * 359.97438 * 26 3 2 28 28 H 1.09001 * 109.46854 * 59.99877 * 1 2 3 29 29 H 1.08994 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47451 * 299.99790 * 1 2 3 31 31 H 1.08997 * 109.46826 * 239.99877 * 2 1 3 32 32 H 1.09001 * 109.46854 * 120.00123 * 2 1 3 33 33 H 1.07997 * 125.99830 * 180.23893 * 5 4 3 34 34 H 1.09002 * 109.47153 * 59.99705 * 12 10 9 35 35 H 1.09001 * 109.46832 * 299.99896 * 12 10 9 36 36 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 37 37 H 1.09003 * 109.47373 * 90.00041 * 16 15 13 38 38 H 1.09005 * 109.46584 * 209.99578 * 16 15 13 39 39 H 1.08999 * 109.47384 * 329.99272 * 16 15 13 40 40 H 1.08993 * 109.47001 * 210.00050 * 17 15 13 41 41 H 1.09002 * 109.47216 * 330.00245 * 17 15 13 42 42 H 0.97004 * 120.00789 * 179.97438 * 21 20 18 43 43 H 1.08994 * 109.47119 * 269.97645 * 27 26 3 44 44 H 1.08991 * 109.47073 * 29.98133 * 27 26 3 45 45 H 1.09000 * 109.46522 * 149.97985 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2908 2.1519 -1.1357 5 6 2.7016 3.3308 -0.7582 6 6 2.7168 3.3565 0.6551 7 6 3.1173 4.4909 1.5049 8 8 3.0799 4.3864 2.7150 9 8 3.5253 5.6446 0.9404 10 6 3.9055 6.7197 1.8391 11 1 3.3325 6.6407 2.7630 12 6 5.3990 6.6165 2.1548 13 6 3.6212 8.0465 1.1836 14 8 3.2306 8.0847 0.0360 15 7 3.8009 9.1909 1.8726 16 6 4.2732 9.1449 3.2585 17 6 3.5251 10.4808 1.2351 18 6 2.0860 10.8603 1.4715 19 1 1.4414 10.2063 2.0401 20 6 1.5924 12.0429 0.9627 21 7 2.3773 12.8395 0.2708 22 14 -0.1913 12.5138 1.2563 23 1 -0.2956 13.2991 2.5124 24 1 -0.6809 13.3326 0.1184 25 1 -1.0154 11.2838 1.3718 26 6 2.2797 2.1204 1.0895 27 6 2.1243 1.6824 2.5230 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9836 4.1438 -1.4108 34 1 5.9720 6.6954 1.2309 35 1 5.6046 5.6568 2.6290 36 1 5.6845 7.4239 2.8292 37 1 5.3626 9.1793 3.2725 38 1 3.8757 9.9993 3.8064 39 1 3.9328 8.2220 3.7280 40 1 4.1767 11.2434 1.6614 41 1 3.7091 10.4032 0.1635 42 1 2.0301 13.6714 -0.0874 43 1 1.1183 1.9200 2.8685 44 1 2.2884 0.6072 2.5942 45 1 2.8539 2.2032 3.1431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869846577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:14 Heat of formation + Delta-G solvation = -42.124440 kcal Electronic energy + Delta-G solvation = -27465.608720 eV Core-core repulsion = 23485.554474 eV Total energy + Delta-G solvation = -3980.054246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74183 -40.20880 -38.73781 -36.19247 -35.02599 -34.86407 -32.84809 -32.48145 -31.55834 -30.01622 -27.82381 -27.59525 -26.11524 -24.82979 -24.15103 -23.17465 -22.09838 -20.73970 -19.69937 -18.72314 -18.03843 -16.69616 -16.54118 -16.43773 -16.12483 -15.59905 -15.43370 -15.24941 -14.82027 -14.51535 -14.24912 -14.04037 -13.56893 -13.46528 -13.30519 -13.19017 -12.82774 -12.80282 -12.62379 -12.38198 -12.32749 -12.12536 -12.02822 -11.80183 -11.61735 -11.34951 -11.16865 -11.05140 -10.88975 -10.62072 -10.51591 -10.30716 -10.14672 -9.67200 -9.62340 -8.91655 -8.83813 -8.42754 -7.68588 -6.03642 -4.08352 1.16596 1.93792 1.98135 2.71533 3.17023 3.31355 3.33580 3.38615 3.44384 3.94142 4.11830 4.21215 4.45924 4.46016 4.56926 4.69989 4.74319 4.87189 4.95612 5.06753 5.09454 5.17988 5.18523 5.26279 5.30996 5.35567 5.50347 5.57206 5.64155 5.67981 5.74214 5.79041 5.90964 6.06600 6.26002 6.26386 6.52473 6.60153 7.02347 7.33290 7.42363 7.50454 7.91219 7.95055 8.22929 8.33876 8.88525 9.03760 9.56651 11.04490 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.002806 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.364753 B = 9976.499864 C =10761.853009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.124 3.876 3 N -0.359 5.359 4 N -0.301 5.301 5 C 0.111 3.889 6 C -0.282 4.282 7 C 0.546 3.454 8 O -0.524 6.524 9 O -0.321 6.321 10 C 0.073 3.927 11 H 0.106 0.894 12 C -0.169 4.169 13 C 0.509 3.491 14 O -0.519 6.519 15 N -0.597 5.597 16 C 0.077 3.923 17 C 0.247 3.753 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.165 3.835 27 C -0.102 4.102 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.201 0.799 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.264 0.736 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.564 -25.722 5.502 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 N -0.139 5.139 4 N -0.119 5.119 5 C -0.077 4.077 6 C -0.295 4.295 7 C 0.391 3.609 8 O -0.415 6.415 9 O -0.235 6.235 10 C 0.014 3.986 11 H 0.123 0.877 12 C -0.227 4.227 13 C 0.293 3.707 14 O -0.394 6.394 15 N -0.330 5.330 16 C -0.067 4.067 17 C 0.128 3.872 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C 0.032 3.968 27 C -0.160 4.160 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.218 0.782 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.043 -26.413 4.096 26.806 hybrid contribution -0.846 0.971 0.942 1.595 sum 1.197 -25.442 5.037 25.963 Atomic orbital electron populations 1.22199 0.93753 1.03385 1.03674 1.21804 0.95662 0.77316 1.04871 1.48610 1.49507 1.12381 1.03381 1.77269 1.23058 1.04537 1.07021 1.24315 0.94436 0.95121 0.93828 1.19023 1.22655 0.94242 0.93544 1.19950 0.73028 0.81872 0.86010 1.90755 1.52888 1.82694 1.15184 1.86649 1.75839 1.21274 1.39778 1.22586 0.97646 0.84995 0.93368 0.87679 1.22274 0.93278 1.03722 1.03378 1.19791 0.79478 0.84434 0.87004 1.90702 1.44838 1.86588 1.17307 1.48063 1.64735 1.07583 1.12665 1.21838 0.98403 1.02738 0.83756 1.19339 0.96279 0.76925 0.94642 1.21433 0.95988 1.04822 1.34407 0.92421 1.24928 0.98030 0.96227 0.94875 1.69926 1.35760 1.12079 1.35583 0.86490 0.84767 0.78453 0.77694 1.20629 1.21055 1.19867 1.21460 0.93637 0.90393 0.91339 1.20739 1.05287 1.01743 0.88212 0.91274 0.90148 0.91780 0.88121 0.88559 0.78197 0.91022 0.91304 0.89409 0.93163 0.90372 0.92306 0.94641 0.93639 0.92681 0.89210 0.90887 0.87494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.24 37.16 0.38 -0.52 16 2 C 0.12 0.73 6.93 -4.04 -0.03 0.70 16 3 N -0.36 -3.71 3.58 -56.59 -0.20 -3.91 16 4 N -0.30 -3.87 12.50 30.87 0.39 -3.49 16 5 C 0.11 1.49 11.87 -16.96 -0.20 1.29 16 6 C -0.28 -3.92 6.13 -105.08 -0.64 -4.56 16 7 C 0.55 8.67 7.93 34.41 0.27 8.94 16 8 O -0.52 -8.47 14.10 -19.28 -0.27 -8.75 16 9 O -0.32 -5.68 9.27 -47.32 -0.44 -6.12 16 10 C 0.07 1.25 2.17 -27.88 -0.06 1.19 16 11 H 0.11 1.73 6.15 -51.93 -0.32 1.41 16 12 C -0.17 -2.26 9.27 37.16 0.34 -1.92 16 13 C 0.51 11.10 7.10 -10.98 -0.08 11.03 16 14 O -0.52 -13.68 16.09 -14.05 -0.23 -13.91 16 15 N -0.60 -12.81 2.86 -182.96 -0.52 -13.33 16 16 C 0.08 1.20 8.92 59.84 0.53 1.74 16 17 C 0.25 6.48 5.16 -5.20 -0.03 6.46 16 18 C -0.53 -15.11 9.39 -34.44 -0.32 -15.44 16 19 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 22 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.16 1.83 7.01 -81.59 -0.57 1.26 16 27 C -0.10 -0.81 9.57 36.01 0.34 -0.47 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.32 7.01 -51.93 -0.36 -0.05 16 33 H 0.20 2.47 8.06 -52.49 -0.42 2.04 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.03 5.12 -51.93 -0.27 0.76 16 37 H 0.05 0.65 7.02 -51.93 -0.36 0.29 16 38 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 39 H 0.06 0.79 6.07 -51.93 -0.32 0.47 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.36 7.05 -51.93 -0.37 -0.01 16 45 H 0.11 1.01 6.51 -51.93 -0.34 0.67 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -36.67 379.34 -6.48 -43.15 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.48 Total: -1.84 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -0.15 Total: 11.36 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.40 Total: -46.68 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.94 Total: -28.77 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.67 -6.48 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869846577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.023 kcal (2) G-P(sol) polarization free energy of solvation -36.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds