Wall clock time and date at job start Tue Mar 31 2020 14:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47220 * 2 1 4 4 C 1.46502 * 119.99882 * 269.99387 * 3 2 1 5 5 C 1.50706 * 109.47323 * 270.00787 * 4 3 2 6 6 H 1.07997 * 119.99935 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99987 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99927 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 119.99875 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47402 * 89.99662 * 9 7 5 11 11 H 1.48499 * 109.47444 * 209.99605 * 9 7 5 12 12 H 1.48500 * 109.47528 * 329.99842 * 9 7 5 13 13 C 1.34769 * 120.00552 * 90.00239 * 3 2 1 14 14 O 1.21283 * 120.00741 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99948 * 359.97438 * 13 3 2 16 16 O 1.45195 * 109.47103 * 180.02562 * 15 13 3 17 17 C 1.34757 * 116.99703 * 180.02562 * 16 15 13 18 18 O 1.21527 * 120.00094 * 0.02562 * 17 16 15 19 19 C 1.47288 * 119.99787 * 180.02562 * 17 16 15 20 20 C 1.41334 * 126.42982 * 0.02669 * 19 17 16 21 21 N 1.30431 * 108.01877 * 179.97438 * 20 19 17 22 22 N 1.39932 * 108.91517 * 359.97438 * 21 20 19 23 23 C 1.46504 * 125.74487 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.46903 * 269.97317 * 23 22 21 25 25 C 1.34231 * 108.51244 * 0.02562 * 22 21 20 26 26 C 1.50696 * 126.29226 * 180.26391 * 25 22 21 27 27 H 1.09000 * 109.47405 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47115 * 300.01170 * 1 2 3 29 29 H 1.09004 * 109.46596 * 60.00068 * 1 2 3 30 30 H 1.09000 * 109.47115 * 239.98830 * 2 1 3 31 31 H 1.09004 * 109.46596 * 119.99932 * 2 1 3 32 32 H 1.09005 * 109.46733 * 29.99813 * 4 3 2 33 33 H 1.08994 * 109.47527 * 150.00149 * 4 3 2 34 34 H 0.97006 * 120.00238 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46921 * 60.00191 * 15 13 3 36 36 H 1.08997 * 109.46924 * 300.00919 * 15 13 3 37 37 H 1.08009 * 125.99531 * 359.94437 * 20 19 17 38 38 H 1.08994 * 109.46858 * 29.97203 * 23 22 21 39 39 H 1.08995 * 109.47357 * 149.97612 * 23 22 21 40 40 H 1.08998 * 109.47518 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47519 * 300.00309 * 24 23 22 42 42 H 1.09012 * 109.46968 * 59.99887 * 24 23 22 43 43 H 1.09007 * 109.47149 * 269.71404 * 26 25 22 44 44 H 1.09001 * 109.47680 * 29.71290 * 26 25 22 45 45 H 1.09005 * 109.47158 * 149.71511 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6860 1.8347 -1.7038 6 1 4.3430 1.2305 -1.0958 7 6 4.1497 2.3901 -2.8775 8 7 3.3498 3.1262 -3.6176 9 14 5.9140 2.0969 -3.4163 10 1 5.9778 0.8762 -4.2595 11 1 6.3932 3.2645 -4.1989 12 1 6.7739 1.9170 -2.2191 13 6 2.2431 2.0165 1.1671 14 8 2.6478 3.1598 1.1671 15 6 1.9914 1.3064 2.4723 16 8 2.3056 2.1962 3.5758 17 6 2.1339 1.7106 4.8211 18 8 1.7331 0.5745 4.9804 19 6 2.4321 2.5569 5.9891 20 6 2.9016 3.8897 5.9619 21 7 3.0431 4.2929 7.1942 22 7 2.6760 3.2537 8.0564 23 6 2.6941 3.3095 9.5203 24 6 4.0607 2.8487 10.0312 25 6 2.3043 2.1972 7.3165 26 6 1.8286 0.8659 7.8383 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5819 1.6875 -2.0284 33 1 2.0958 3.1409 -1.1386 34 1 3.6758 3.5167 -4.4436 35 1 2.6213 0.4187 2.5302 36 1 0.9434 1.0125 2.5298 37 1 3.1078 4.4722 5.0759 38 1 2.5102 4.3328 9.8472 39 1 1.9182 2.6558 9.9185 40 1 4.0745 2.8905 11.1203 41 1 4.2448 1.8253 9.7042 42 1 4.8368 3.5025 9.6330 43 1 2.6817 0.1991 7.9642 44 1 1.3336 1.0079 8.7990 45 1 1.1264 0.4275 7.1290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869846676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:08 Heat of formation + Delta-G solvation = -47.279487 kcal Electronic energy + Delta-G solvation = -27090.926185 eV Core-core repulsion = 23110.648399 eV Total energy + Delta-G solvation = -3980.277786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.76034 -40.05498 -38.78395 -36.19758 -35.24536 -35.04090 -32.81450 -32.50582 -30.37276 -30.11496 -29.04481 -27.70437 -26.42281 -24.46654 -23.18616 -23.00457 -22.35142 -20.86841 -19.73163 -18.57486 -17.98150 -16.69715 -16.66433 -16.36562 -16.33298 -15.78029 -15.60950 -15.26938 -14.85297 -14.39754 -14.28027 -14.09186 -13.50517 -13.47537 -13.43362 -13.21638 -12.95125 -12.75439 -12.66906 -12.48796 -12.38028 -12.05894 -12.02131 -11.82171 -11.59505 -11.20404 -11.07068 -10.91006 -10.82786 -10.56285 -10.44728 -10.35969 -10.12089 -9.69303 -9.63223 -8.94092 -8.93353 -8.42476 -7.71259 -6.03428 -4.08068 1.13814 1.92835 1.94757 2.68342 3.13777 3.31014 3.32455 3.38851 3.44252 3.92612 4.10840 4.18910 4.43605 4.46156 4.54761 4.69623 4.72883 4.91826 4.95627 5.04476 5.15472 5.19281 5.24056 5.29269 5.31305 5.38542 5.42967 5.50796 5.60655 5.62479 5.70665 5.77056 6.03291 6.22266 6.24161 6.47469 6.48837 6.54958 7.03614 7.31472 7.43190 7.51178 7.88787 7.93593 8.23250 8.34279 8.88441 9.03492 9.56889 11.04717 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018006 B = 0.002582 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.644586 B =10840.277350 C =11737.030583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.053 3.947 16 O -0.324 6.324 17 C 0.545 3.455 18 O -0.525 6.525 19 C -0.283 4.283 20 C 0.111 3.889 21 N -0.300 5.300 22 N -0.359 5.359 23 C 0.124 3.876 24 C -0.172 4.172 25 C 0.165 3.835 26 C -0.102 4.102 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.202 0.798 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 -5.956 25.782 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.025 4.025 16 O -0.239 6.239 17 C 0.391 3.609 18 O -0.416 6.416 19 C -0.295 4.295 20 C -0.077 4.077 21 N -0.118 5.118 22 N -0.139 5.139 23 C 0.003 3.997 24 C -0.230 4.230 25 C 0.032 3.968 26 C -0.160 4.160 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.219 0.781 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.732 -4.540 26.525 27.324 hybrid contribution 0.720 -0.964 -1.026 1.581 sum -4.013 -5.504 25.499 26.393 Atomic orbital electron populations 1.22235 0.96578 1.01642 1.02420 1.21501 0.93725 0.83991 1.03001 1.48197 1.63926 1.13395 1.07142 1.19323 0.96424 0.93726 0.77602 1.21433 0.96873 1.31977 1.06304 0.92394 1.24931 0.97896 0.94875 0.96398 1.69931 1.35720 1.33375 1.14319 0.86487 0.84650 0.77643 0.78594 1.20668 1.21090 1.19856 1.19729 0.79660 0.87152 0.84310 1.90712 1.44419 1.17525 1.86755 1.22927 1.02633 0.92610 0.84286 1.86598 1.78876 1.44501 1.13916 1.19943 0.73710 0.84690 0.82548 1.90772 1.44711 1.19390 1.86739 1.19010 1.23109 0.97148 0.90280 1.24345 0.94088 0.93434 0.95820 1.77283 1.23730 1.10425 1.00409 1.48624 1.49238 1.09058 1.06954 1.21808 0.99585 1.04707 0.73588 1.22198 0.96311 1.02492 1.01970 1.21457 0.93874 0.91201 0.90289 1.20740 1.03027 0.90078 1.02127 0.91945 0.93084 0.91835 0.89487 0.91714 0.94674 0.93698 0.92700 0.88730 0.88807 0.78098 0.88091 0.88540 0.90141 0.91809 0.91291 0.89239 0.90861 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.62 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -12.52 2.46 -175.05 -0.43 -12.95 16 4 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 5 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.51 10.85 7.75 -10.99 -0.09 10.77 16 14 O -0.52 -13.46 16.08 -14.11 -0.23 -13.68 16 15 C 0.05 0.88 4.51 36.01 0.16 1.04 16 16 O -0.32 -5.64 9.60 -47.33 -0.45 -6.10 16 17 C 0.55 8.38 7.95 34.41 0.27 8.66 16 18 O -0.53 -8.20 14.64 -19.29 -0.28 -8.49 16 19 C -0.28 -3.82 6.13 -105.08 -0.64 -4.46 16 20 C 0.11 1.47 11.87 -16.97 -0.20 1.27 16 21 N -0.30 -3.81 12.50 30.87 0.39 -3.42 16 22 N -0.36 -3.60 3.58 -56.59 -0.20 -3.81 16 23 C 0.12 0.69 6.93 -4.04 -0.03 0.66 16 24 C -0.17 -0.82 10.24 37.16 0.38 -0.44 16 25 C 0.16 1.77 7.01 -81.59 -0.57 1.20 16 26 C -0.10 -0.76 9.56 36.00 0.34 -0.42 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.65 7.22 -51.93 -0.37 0.28 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.41 8.07 -51.93 -0.42 1.00 16 31 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.09 1.42 7.40 -51.93 -0.38 1.04 16 36 H 0.09 1.35 7.18 -51.93 -0.37 0.98 16 37 H 0.20 2.47 8.06 -52.48 -0.42 2.05 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.30 7.01 -51.93 -0.36 -0.07 16 40 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.33 7.04 -51.93 -0.37 -0.03 16 45 H 0.11 0.97 6.51 -51.93 -0.34 0.63 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -36.14 384.66 -6.84 -42.98 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.68 Total: -2.22 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -0.46 Total: 10.79 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.49 Total: -46.01 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.96 Total: -28.27 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.14 -6.84 -42.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869846676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.297 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds